C19h16orf87 (similar to human chromosome 16 open reading frame 87) - Rat Genome Database

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Gene: C19h16orf87 (similar to human chromosome 16 open reading frame 87) Rattus norvegicus
Analyze
Symbol: C19h16orf87 (Ensembl: RGD1308706)
Name: similar to human chromosome 16 open reading frame 87 (Ensembl:similar to RIKEN cDNA 4921524J17)
RGD ID: 1308706
Description: Orthologous to human C16orf87 (chromosome 16 open reading frame 87); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC291925; LOC291925; RGD1308706; similar to RIKEN cDNA 4921524J17; uncharacterized protein LOC291925; UPF0547 protein C16orf87 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81937,800,187 - 37,827,091 (+)NCBIGRCr8
mRatBN7.21921,626,390 - 21,653,869 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1921,626,914 - 21,654,255 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1923,317,500 - 23,344,470 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01928,512,016 - 28,538,984 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01931,474,835 - 31,501,808 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01922,699,808 - 22,726,712 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1922,699,808 - 22,726,701 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01933,717,644 - 33,744,539 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41922,984,411 - 23,011,305 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11922,989,047 - 23,016,229 (+)NCBI
Celera1921,486,846 - 21,513,739 (+)NCBICelera
Cytogenetic Map19p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
C19h16orf87
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81937,800,187 - 37,827,091 (+)NCBIGRCr8
mRatBN7.21921,626,390 - 21,653,869 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1921,626,914 - 21,654,255 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1923,317,500 - 23,344,470 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01928,512,016 - 28,538,984 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01931,474,835 - 31,501,808 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01922,699,808 - 22,726,712 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1922,699,808 - 22,726,701 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01933,717,644 - 33,744,539 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41922,984,411 - 23,011,305 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11922,989,047 - 23,016,229 (+)NCBI
Celera1921,486,846 - 21,513,739 (+)NCBICelera
Cytogenetic Map19p11NCBI
C16orf87
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381646,796,603 - 46,831,180 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1646,796,603 - 46,831,180 (-)EnsemblGRCh38hg38GRCh38
GRCh371646,830,515 - 46,865,092 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361645,393,460 - 45,422,575 (-)NCBINCBI36Build 36hg18NCBI36
Celera1631,344,142 - 31,373,247 (-)NCBICelera
Cytogenetic Map16q11.2NCBI
HuRef1632,725,523 - 32,754,643 (-)NCBIHuRef
CHM1_11648,243,141 - 48,272,248 (-)NCBICHM1_1
T2T-CHM13v2.01652,593,496 - 52,628,075 (-)NCBIT2T-CHM13v2.0
4921524J17Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39886,135,388 - 86,159,470 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl886,135,388 - 86,159,462 (-)EnsemblGRCm39 Ensembl
GRCm38885,408,759 - 85,432,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,408,759 - 85,432,833 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,932,658 - 87,956,740 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36888,298,864 - 88,322,938 (-)NCBIMGSCv36mm8
Celera889,703,821 - 89,727,627 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.61NCBI
CUNH16orf87
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955448333,903 - 366,598 (-)NCBIChiLan1.0ChiLan1.0
C18H16orf87
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21856,261,261 - 56,291,039 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11662,160,840 - 62,196,049 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01627,061,836 - 27,097,017 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
C15H16orf87
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12235,188,924 - 35,189,599 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl158,290,030 - 8,350,937 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha158,476,970 - 8,505,249 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0158,439,304 - 8,468,528 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl158,439,358 - 8,467,853 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1158,268,315 - 8,296,781 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0158,317,124 - 8,377,821 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0158,365,014 - 8,393,463 (+)NCBIUU_Cfam_GSD_1.0
CUNH16orf87
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934959,400,113 - 59,426,862 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936475162,207 - 189,142 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936475162,213 - 188,945 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C6H16orf87
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl637,784,694 - 37,817,195 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1637,784,499 - 37,817,907 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2633,099,704 - 33,107,199 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH16orf87
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1532,651,752 - 32,683,595 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl532,651,744 - 32,683,381 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604743,916,792 - 43,948,764 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH16orf87
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624914283,143 - 310,253 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C19h16orf87
83 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:102
Interacting mature miRNAs:126
Transcripts:ENSRNOT00000023169
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat

Markers in Region
D19Mco1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21921,633,685 - 21,633,932 (+)MAPPERmRatBN7.2
Rnor_6.01922,706,525 - 22,706,771NCBIRnor6.0
Rnor_5.01933,724,363 - 33,724,609UniSTSRnor5.0
RGSC_v3.41922,991,127 - 22,991,373RGDRGSC3.4
RGSC_v3.41922,991,128 - 22,991,374UniSTSRGSC3.4
RGSC_v3.11922,995,953 - 22,996,199RGD
Celera1921,493,563 - 21,493,809UniSTS
Cytogenetic Map19q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000023169   ⟹   ENSRNOP00000023169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1921,626,963 - 21,654,255 (+)Ensembl
Rnor_6.0 Ensembl1922,699,808 - 22,726,701 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104601   ⟹   ENSRNOP00000086928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1921,626,914 - 21,654,255 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116203   ⟹   ENSRNOP00000079031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1921,632,572 - 21,654,255 (+)Ensembl
RefSeq Acc Id: NM_001134421   ⟹   NP_001127893
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81937,800,187 - 37,827,081 (+)NCBI
mRatBN7.21921,626,969 - 21,653,859 (+)NCBI
Rnor_6.01922,699,808 - 22,726,702 (+)NCBI
Rnor_5.01933,717,644 - 33,744,539 (+)NCBI
RGSC_v3.41922,984,411 - 23,011,305 (+)RGD
Celera1921,486,846 - 21,513,739 (+)RGD
Sequence:
RefSeq Acc Id: XM_017601209   ⟹   XP_017456698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81937,800,390 - 37,827,091 (+)NCBI
mRatBN7.21921,627,216 - 21,653,869 (+)NCBI
Rnor_6.01922,700,005 - 22,726,712 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001127893 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456698 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI67107 (Get FASTA)   NCBI Sequence Viewer  
  EDL87485 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000023169.5
  ENSRNOP00000079031.1
  ENSRNOP00000086928.1
RefSeq Acc Id: NP_001127893   ⟸   NM_001134421
- UniProtKB: B2RZC8 (UniProtKB/TrEMBL),   F7FK80 (UniProtKB/TrEMBL),   A0A8I5ZLY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456698   ⟸   XM_017601209
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZLY2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023169   ⟸   ENSRNOT00000023169
Ensembl Acc Id: ENSRNOP00000079031   ⟸   ENSRNOT00000116203
Ensembl Acc Id: ENSRNOP00000086928   ⟸   ENSRNOT00000104601
Protein Domains
UPF0547

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RZC8-F1-model_v2 AlphaFold B2RZC8 1-154 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700992
Promoter ID:EPDNEW_R11515
Type:initiation region
Name:RGD1308706_1
Description:similar to RIKEN cDNA 4921524J17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01922,699,806 - 22,699,866EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308706 AgrOrtholog
BioCyc Gene G2FUF-6205 BioCyc
Ensembl Genes ENSRNOG00000017090 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023169.8 UniProtKB/TrEMBL
  ENSRNOT00000104601.1 UniProtKB/TrEMBL
  ENSRNOT00000116203.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7110902 IMAGE-MGC_LOAD
InterPro C16orf87-like UniProtKB/TrEMBL
  UPF0547 UniProtKB/TrEMBL
KEGG Report rno:291925 UniProtKB/TrEMBL
MGC_CLONE MGC:189564 IMAGE-MGC_LOAD
NCBI Gene 291925 ENTREZGENE
PANTHER CHROMOSOME 16 OPEN READING FRAME 87 UniProtKB/TrEMBL
  PTHR31101 UniProtKB/TrEMBL
  UPF0547 PROTEIN C16ORF87 UniProtKB/TrEMBL
Pfam UPF0547 UniProtKB/TrEMBL
PhenoGen C19h16orf87 PhenoGen
RatGTEx ENSRNOG00000017090 RatGTEx
UniProt A0A8I5ZLY2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A288_RAT UniProtKB/TrEMBL
  B2RZC8 ENTREZGENE, UniProtKB/TrEMBL
  F7FK80 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 C19h16orf87  similar to human chromosome 16 open reading frame 87  RGD1308706  similar to RIKEN cDNA 4921524J17  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1308706  similar to RIKEN cDNA 4921524J17   RGD1308706_predicted  similar to RIKEN cDNA 4921524J17 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1308706_predicted  similar to RIKEN cDNA 4921524J17 (predicted)  LOC291925_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC291925_predicted  similar to RIKEN cDNA 4921524J17 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL