4921524J17Rik (RIKEN cDNA 4921524J17 gene) - Rat Genome Database
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Gene: 4921524J17Rik (RIKEN cDNA 4921524J17 gene) Mus musculus
Analyze
Symbol: 4921524J17Rik
Name: RIKEN cDNA 4921524J17 gene
RGD ID: 1318634
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; embryo mesenchyme; forebrain; musculoskeletal system; and sensory organ. Orthologous to human C16orf87 (chromosome 16 open reading frame 87); INTERACTS WITH (+)-schisandrin B (ortholog); 2,3,7,8-tetrachlorodibenzodioxine (ortholog); 2-hydroxypropanoic acid (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC66714; UPF0547 protein C16orf87 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39886,135,388 - 86,159,470 (-)NCBIGRCm39mm39
GRCm38885,408,759 - 85,432,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,408,759 - 85,432,833 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,932,658 - 87,956,740 (-)NCBIGRCm37mm9NCBIm37
MGSCv36888,298,864 - 88,322,938 (-)NCBImm8
Celera889,703,821 - 89,727,627 (-)NCBICelera
Cytogenetic Map8C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466305   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15741177   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18799693   PMID:20436479   PMID:21267068   PMID:26238476  


Genomics

Comparative Map Data
4921524J17Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39886,135,388 - 86,159,470 (-)NCBIGRCm39mm39
GRCm38885,408,759 - 85,432,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,408,759 - 85,432,833 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,932,658 - 87,956,740 (-)NCBIGRCm37mm9NCBIm37
MGSCv36888,298,864 - 88,322,938 (-)NCBImm8
Celera889,703,821 - 89,727,627 (-)NCBICelera
Cytogenetic Map8C3NCBI
C16orf87
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1646,796,603 - 46,831,180 (-)EnsemblGRCh38hg38GRCh38
GRCh381646,796,603 - 46,831,471 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371646,835,959 - 46,865,074 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361645,393,460 - 45,422,575 (-)NCBINCBI36hg18NCBI36
Celera1631,344,142 - 31,373,247 (-)NCBI
Cytogenetic Map16q11.2NCBI
HuRef1632,725,523 - 32,754,643 (-)NCBIHuRef
CHM1_11648,243,141 - 48,272,248 (-)NCBICHM1_1
RGD1308706
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01922,699,808 - 22,726,712 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1922,699,808 - 22,726,701 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01933,717,644 - 33,744,539 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41922,984,411 - 23,011,305 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11922,989,047 - 23,016,229 (+)NCBI
Celera1921,486,846 - 21,513,739 (+)NCBICelera
Cytogenetic Map19p11NCBI
LOC102015256
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955448333,903 - 366,598 (-)NCBIChiLan1.0ChiLan1.0
C16H16orf87
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v01627,061,836 - 27,097,017 (-)NCBIMhudiblu_PPA_v0panPan3
C22H16orf87
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl158,290,030 - 8,350,937 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12235,188,924 - 35,189,599 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CUNH16orf87
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936475162,213 - 188,945 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C6H16orf87
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl637,723,493 - 37,817,195 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1637,784,499 - 37,817,907 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2633,099,704 - 33,107,199 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH16orf87
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl532,651,744 - 32,683,381 (-)Ensembl
ChlSab1.1532,651,752 - 32,683,595 (-)NCBI
CUNH16orf87
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624914283,143 - 310,253 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse
1301766Desp1_mdespair 1 (mouse)Not determined884759576118759741Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:222
Count of miRNA genes:189
Interacting mature miRNAs:203
Transcripts:ENSMUST00000047749
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000047749   ⟹   ENSMUSP00000040975
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl885,408,759 - 85,432,833 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209355   ⟹   ENSMUSP00000147531
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl885,409,818 - 85,432,821 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210556
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl885,412,243 - 85,432,814 (-)Ensembl
RefSeq Acc Id: NM_025722   ⟹   NP_079998
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39886,135,388 - 86,159,470 (-)NCBI
GRCm38885,408,759 - 85,432,841 (-)ENTREZGENE
MGSCv37887,932,658 - 87,956,740 (-)RGD
Celera889,703,821 - 89,727,627 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_033144
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39886,135,388 - 86,159,470 (-)NCBI
GRCm38885,408,759 - 85,432,841 (-)ENTREZGENE
MGSCv37887,932,658 - 87,956,740 (-)RGD
Celera889,703,821 - 89,727,627 (-)RGD
cM Map8 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_079998   ⟸   NM_025722
- UniProtKB: Q9CR55 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000040975   ⟸   ENSMUST00000047749
RefSeq Acc Id: ENSMUSP00000147531   ⟸   ENSMUST00000209355

Promoters
RGD ID:8667763
Promoter ID:EPDNEW_M11913
Type:initiation region
Name:4921524J17Rik_1
Description:Mus musculus RIKEN cDNA 4921524J17 gene , transcript variant2, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38885,432,810 - 85,432,870EPDNEW
RGD ID:6842519
Promoter ID:MM_KWN:55151
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain
Transcripts:NM_025722,   NM_025722_4921524J17RIK,   NR_033144
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,956,454 - 87,956,954 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913964 AgrOrtholog
Ensembl Genes ENSMUSG00000036934 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000040975 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000147531 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000047749 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000209355 UniProtKB/TrEMBL
InterPro C16orf87-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UPF0547 UniProtKB/Swiss-Prot
KEGG Report mmu:66714 UniProtKB/Swiss-Prot
MGD MGI:1913964 ENTREZGENE
NCBI Gene 66714 ENTREZGENE
PANTHER PTHR31101 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UPF0547 UniProtKB/Swiss-Prot
PhenoGen 4921524J17Rik PhenoGen
UniGene Mm.272748 ENTREZGENE
UniProt A0A1B0GRH9_MOUSE UniProtKB/TrEMBL
  CP087_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9CZ14_MOUSE UniProtKB/TrEMBL