Plxna4 (plexin A4) - Rat Genome Database

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Gene: Plxna4 (plexin A4) Rattus norvegicus
Analyze
Symbol: Plxna4
Name: plexin A4
RGD ID: 1308074
Description: Predicted to enable semaphorin receptor activity. Predicted to be involved in several processes, including maintenance of synapse structure; nervous system development; and semaphorin-plexin signaling pathway. Predicted to act upstream of or within nervous system development; regulation of axon extension involved in axon guidance; and regulation of negative chemotaxis. Predicted to be part of semaphorin receptor complex. Predicted to be active in cerebellar climbing fiber to Purkinje cell synapse and plasma membrane. Orthologous to human PLXNA4 (plexin A4); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC312213; plexin A4, A; plexin-A4; Plxna4a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8461,687,483 - 62,129,467 (-)NCBIGRCr8
mRatBN7.2460,720,246 - 61,162,206 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl460,720,255 - 61,162,206 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx465,683,455 - 66,140,923 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0461,599,261 - 62,056,703 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0460,001,623 - 60,459,091 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0459,439,489 - 59,883,637 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl459,445,767 - 59,809,321 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0459,185,891 - 59,625,441 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4459,254,319 - 59,692,187 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1459,530,019 - 59,968,678 (-)NCBI
Celera455,807,378 - 56,248,398 (-)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12591607   PMID:15814794   PMID:18804103   PMID:22465808   PMID:24599038   PMID:24970554  


Genomics

Comparative Map Data
Plxna4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8461,687,483 - 62,129,467 (-)NCBIGRCr8
mRatBN7.2460,720,246 - 61,162,206 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl460,720,255 - 61,162,206 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx465,683,455 - 66,140,923 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0461,599,261 - 62,056,703 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0460,001,623 - 60,459,091 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0459,439,489 - 59,883,637 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl459,445,767 - 59,809,321 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0459,185,891 - 59,625,441 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4459,254,319 - 59,692,187 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1459,530,019 - 59,968,678 (-)NCBI
Celera455,807,378 - 56,248,398 (-)NCBICelera
Cytogenetic Map4q22NCBI
PLXNA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387132,123,340 - 132,648,688 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7132,123,340 - 132,648,688 (-)EnsemblGRCh38hg38GRCh38
GRCh377131,808,099 - 132,333,447 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367131,458,631 - 131,983,987 (-)NCBINCBI36Build 36hg18NCBI36
Build 347131,269,944 - 131,370,450NCBI
Celera7126,560,410 - 127,085,672 (-)NCBICelera
Cytogenetic Map7q32.3NCBI
HuRef7126,124,398 - 126,649,403 (-)NCBIHuRef
CHM1_17131,743,547 - 132,268,963 (-)NCBICHM1_1
T2T-CHM13v2.07133,444,537 - 133,970,190 (-)NCBIT2T-CHM13v2.0
Plxna4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39632,121,478 - 32,565,127 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl632,121,203 - 32,565,127 (-)EnsemblGRCm39 Ensembl
GRCm38632,144,543 - 32,588,192 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl632,144,268 - 32,588,192 (-)EnsemblGRCm38mm10GRCm38
MGSCv37632,094,543 - 32,538,192 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36632,080,285 - 32,518,350 (-)NCBIMGSCv36mm8
Celera632,131,794 - 32,576,227 (-)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.9NCBI
Plxna4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541035,281,648 - 35,713,453 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541035,281,042 - 35,714,094 (+)NCBIChiLan1.0ChiLan1.0
PLXNA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26168,954,235 - 169,406,838 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1720,964,479 - 21,489,269 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07124,097,028 - 124,621,504 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17136,607,795 - 137,059,706 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7136,643,657 - 136,992,405 (-)Ensemblpanpan1.1panPan2
PLXNA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1144,683,569 - 5,110,113 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl144,680,882 - 5,103,050 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha144,344,388 - 4,770,614 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0144,419,335 - 4,847,251 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl144,421,153 - 4,842,617 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1144,622,751 - 5,050,482 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0144,368,126 - 4,795,816 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0144,510,104 - 4,938,016 (+)NCBIUU_Cfam_GSD_1.0
Plxna4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511822,892,653 - 23,318,229 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365793,092,924 - 3,444,012 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365793,025,251 - 3,449,347 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLXNA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1816,427,673 - 16,973,768 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11816,475,250 - 16,977,821 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PLXNA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121100,779,307 - 101,223,184 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21100,781,779 - 101,158,801 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660422,152,838 - 2,604,602 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plxna4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247833,658,835 - 4,285,638 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247833,831,320 - 4,292,594 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plxna4
2883 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:47
Interacting mature miRNAs:54
Transcripts:ENSRNOT00000017536
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45664777678882945Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45664777678882945Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45711443281266970Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711470578881294Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41794699962946999Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45664777678882945Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45664777678882945Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45863587778886137Rat

Markers in Region
D4Rat20  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2461,057,756 - 61,057,896 (+)MAPPERmRatBN7.2
Rnor_6.0459,777,890 - 59,778,029NCBIRnor6.0
Rnor_5.0459,521,117 - 59,521,256UniSTSRnor5.0
RGSC_v3.4459,589,424 - 59,589,563UniSTSRGSC3.4
RGSC_v3.4459,589,423 - 59,589,563RGDRGSC3.4
RGSC_v3.1459,865,554 - 59,865,693RGD
Celera456,144,732 - 56,144,871UniSTS
RH 3.4 Map4364.3RGD
RH 3.4 Map4364.3UniSTS
RH 2.0 Map4412.4RGD
SHRSP x BN Map432.4399RGD
FHH x ACI Map440.2899RGD
Cytogenetic Map4q22UniSTS
D4Got40  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2460,965,509 - 60,965,688 (+)MAPPERmRatBN7.2
Rnor_6.0459,685,823 - 59,685,998NCBIRnor6.0
Rnor_5.0459,430,964 - 59,431,139UniSTSRnor5.0
RGSC_v3.4459,495,467 - 59,495,644RGDRGSC3.4
RGSC_v3.4459,495,468 - 59,495,644UniSTSRGSC3.4
RGSC_v3.1459,771,598 - 59,771,774RGD
Celera456,052,253 - 56,052,427UniSTS
RH 3.4 Map4362.5UniSTS
RH 3.4 Map4362.5RGD
RH 2.0 Map4415.1RGD
Cytogenetic Map4q22UniSTS
BF401449  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2461,133,922 - 61,134,168 (+)MAPPERmRatBN7.2
Rnor_6.0459,855,209 - 59,855,454NCBIRnor6.0
Rnor_5.0459,596,954 - 59,597,199UniSTSRnor5.0
RGSC_v3.4459,663,963 - 59,664,208UniSTSRGSC3.4
Celera456,220,477 - 56,220,722UniSTS
RH 3.4 Map4362.6UniSTS
Cytogenetic Map4q22UniSTS
AU047795  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2461,161,066 - 61,161,185 (+)MAPPERmRatBN7.2
mRatBN7.24159,522,587 - 159,522,823 (+)MAPPERmRatBN7.2
Rnor_6.04161,026,152 - 161,026,387NCBIRnor6.0
Rnor_6.0459,882,499 - 59,882,617NCBIRnor6.0
Rnor_5.0459,624,303 - 59,624,421UniSTSRnor5.0
Rnor_5.04226,241,268 - 226,241,503UniSTSRnor5.0
RGSC_v3.44163,067,031 - 163,067,266UniSTSRGSC3.4
RGSC_v3.4459,691,473 - 59,691,591UniSTSRGSC3.4
Celera456,247,502 - 56,247,630UniSTS
Celera4148,239,419 - 148,239,654UniSTS
Cytogenetic Map4q22UniSTS
RH142001  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2460,765,885 - 60,766,073 (+)MAPPERmRatBN7.2
Rnor_6.0459,485,147 - 59,485,334NCBIRnor6.0
Rnor_5.0459,231,548 - 59,231,735UniSTSRnor5.0
RGSC_v3.4459,294,898 - 59,295,085UniSTSRGSC3.4
Celera455,853,038 - 55,853,225UniSTS
RH 3.4 Map4361.2UniSTS
Cytogenetic Map4q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 59 31

Sequence


Ensembl Acc Id: ENSRNOT00000017536   ⟹   ENSRNOP00000017537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl460,720,255 - 61,162,206 (-)Ensembl
Rnor_6.0 Ensembl459,445,767 - 59,809,321 (-)Ensembl
RefSeq Acc Id: NM_001107852   ⟹   NP_001101322
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8461,687,501 - 62,129,445 (-)NCBI
mRatBN7.2460,720,246 - 61,162,206 (-)NCBI
RefSeq Acc Id: XM_063285987   ⟹   XP_063142057
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8461,687,483 - 62,129,459 (-)NCBI
RefSeq Acc Id: XM_063285988   ⟹   XP_063142058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8461,871,886 - 62,129,467 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001101322 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142057 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142058 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM15289 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017537.4
Ensembl Acc Id: ENSRNOP00000017537   ⟸   ENSRNOT00000017536
RefSeq Acc Id: NP_001101322   ⟸   NM_001107852
- Peptide Label: precursor
- UniProtKB: D3ZES7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142057   ⟸   XM_063285987
- Peptide Label: isoform X1
- UniProtKB: D3ZES7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142058   ⟸   XM_063285988
- Peptide Label: isoform X2
Protein Domains
Sema

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZES7-F1-model_v2 AlphaFold D3ZES7 1-1893 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308074 AgrOrtholog
BioCyc Gene G2FUF-45293 BioCyc
Ensembl Genes ENSRNOG00000013072 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017536.6 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  IPT_TIG_rcpt UniProtKB/TrEMBL
  Plexin UniProtKB/TrEMBL
  Plexin-like_fold UniProtKB/TrEMBL
  Plexin_cytoplasmic_RasGAP_dom UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/TrEMBL
  Semaphorin/CD100_Ag UniProtKB/TrEMBL
  TIG1_plexin UniProtKB/TrEMBL
  TIG2_plexin UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
NCBI Gene 312213 ENTREZGENE
PANTHER PLEXIN-A4 UniProtKB/TrEMBL
  PTHR22625 UniProtKB/TrEMBL
Pfam Plexin_cytopl UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
  TIG UniProtKB/TrEMBL
  TIG_2 UniProtKB/TrEMBL
  TIG_plexin UniProtKB/TrEMBL
PhenoGen Plxna4 PhenoGen
PROSITE SEMA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013072 RatGTEx
SMART IPT UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
Superfamily-SCOP Ig_E-set UniProtKB/TrEMBL
  Plexin repeat UniProtKB/TrEMBL
  Rho_GAP UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
UniProt D3ZES7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-14 Plxna4  plexin A4  Plxna4a  plexin A4, A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Plxna4a  plexin A4, A  Plxna4  plexin A4   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Plxna4  plexin A4   Plxna4_predicted  plexin A4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Plxna4_predicted  plexin A4 (predicted)      Symbol and Name status set to approved 70820 APPROVED