B3galnt2 (beta-1,3-N-acetylgalactosaminyltransferase 2) - Rat Genome Database

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Gene: B3galnt2 (beta-1,3-N-acetylgalactosaminyltransferase 2) Rattus norvegicus
Analyze
Symbol: B3galnt2
Name: beta-1,3-N-acetylgalactosaminyltransferase 2
RGD ID: 1306946
Description: Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation. Predicted to be located in endoplasmic reticulum. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A11. Orthologous to human B3GALNT2 (beta-1,3-N-acetylgalactosaminyltransferase 2); INTERACTS WITH bisphenol A; flutamide; glycidol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC291212; RGD1306946; similar to hypothetical protein MGC39558 ; UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2; UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81756,030,409 - 56,072,952 (-)NCBIGRCr8
mRatBN7.21751,334,921 - 51,377,469 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1751,334,921 - 51,377,469 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1754,503,357 - 54,551,377 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01758,506,292 - 58,554,312 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01752,637,339 - 52,679,775 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01754,027,859 - 54,070,399 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1754,027,859 - 54,070,399 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01751,721,961 - 51,764,786 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41759,531,872 - 59,576,151 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11759,544,788 - 59,586,800 (-)NCBI
Celera1747,342,254 - 47,384,826 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090   PMID:23453667   PMID:23929950  


Genomics

Comparative Map Data
B3galnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81756,030,409 - 56,072,952 (-)NCBIGRCr8
mRatBN7.21751,334,921 - 51,377,469 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1751,334,921 - 51,377,469 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1754,503,357 - 54,551,377 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01758,506,292 - 58,554,312 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01752,637,339 - 52,679,775 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01754,027,859 - 54,070,399 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1754,027,859 - 54,070,399 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01751,721,961 - 51,764,786 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41759,531,872 - 59,576,151 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11759,544,788 - 59,586,800 (-)NCBI
Celera1747,342,254 - 47,384,826 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
B3GALNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381235,439,796 - 235,504,452 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1235,447,190 - 235,504,452 (-)EnsemblGRCh38hg38GRCh38
GRCh371235,610,505 - 235,667,752 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361233,679,867 - 233,734,404 (-)NCBINCBI36Build 36hg18NCBI36
Build 341231,939,287 - 231,993,822NCBI
Celera1208,853,777 - 208,911,041 (-)NCBICelera
Cytogenetic Map1q42.3NCBI
HuRef1206,062,149 - 206,119,437 (-)NCBIHuRef
CHM1_11236,883,102 - 236,940,357 (-)NCBICHM1_1
T2T-CHM13v2.01234,835,690 - 234,900,322 (-)NCBIT2T-CHM13v2.0
B3galnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391314,129,059 - 14,173,688 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1314,129,054 - 14,173,688 (+)EnsemblGRCm39 Ensembl
GRCm381313,954,474 - 13,999,103 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1313,954,469 - 13,999,103 (+)EnsemblGRCm38mm10GRCm38
MGSCv371314,046,941 - 14,091,335 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361313,746,800 - 13,791,194 (+)NCBIMGSCv36mm8
Celera1314,262,309 - 14,306,767 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map135.29NCBI
B3galnt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554924,472,587 - 4,501,531 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554924,472,585 - 4,502,704 (+)NCBIChiLan1.0ChiLan1.0
B3GALNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2113,672,096 - 13,730,953 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,884,188 - 13,943,022 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01211,006,939 - 211,064,445 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11216,018,878 - 216,076,060 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1216,018,886 - 216,076,060 (-)Ensemblpanpan1.1panPan2
B3GALNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.144,434,987 - 4,489,844 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl44,433,871 - 4,490,903 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha44,441,587 - 4,472,045 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.044,456,828 - 4,511,571 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl44,456,642 - 4,513,898 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.144,468,268 - 4,525,166 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.044,585,762 - 4,640,259 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.044,807,375 - 4,864,252 (+)NCBIUU_Cfam_GSD_1.0
B3galnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934440,847,177 - 40,884,307 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648417,012,537 - 17,049,511 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648417,012,403 - 17,049,519 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GALNT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1455,749,473 - 55,818,004 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11455,749,409 - 55,818,738 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21459,874,772 - 59,893,941 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GALNT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12572,614,998 - 72,677,383 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2572,611,475 - 72,677,356 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605574,647,067 - 74,714,036 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3galnt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477514,992,335 - 15,065,970 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477514,992,189 - 15,066,787 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in B3galnt2
234 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:404
Count of miRNA genes:238
Interacting mature miRNAs:278
Transcripts:ENSRNOT00000022924
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)175089090860781592Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)175089090860781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172418489079524188Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172393042179524188Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2393042179524188Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172393042179524188Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174135465160463643Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1358295Aocep1Aortic cell protein QTL 16.17e-07thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)175090919660781426Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat

Markers in Region
AA998918  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21751,334,948 - 51,335,140 (+)MAPPERmRatBN7.2
Rnor_6.01754,027,887 - 54,028,078NCBIRnor6.0
Rnor_5.01751,721,989 - 51,722,180UniSTSRnor5.0
RGSC_v3.41759,531,900 - 59,532,091UniSTSRGSC3.4
Celera1747,342,282 - 47,342,474UniSTS
RH 3.4 Map17535.29UniSTS
Cytogenetic Map17q12.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000022924   ⟹   ENSRNOP00000022924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1751,334,921 - 51,377,469 (-)Ensembl
Rnor_6.0 Ensembl1754,027,859 - 54,070,399 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085150   ⟹   ENSRNOP00000073292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1751,336,036 - 51,377,469 (-)Ensembl
Rnor_6.0 Ensembl1754,031,258 - 54,070,231 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105211   ⟹   ENSRNOP00000086193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1751,334,921 - 51,377,469 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117768   ⟹   ENSRNOP00000088702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1751,334,921 - 51,377,407 (-)Ensembl
RefSeq Acc Id: NM_001144851   ⟹   NP_001138323
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81756,030,409 - 56,072,952 (-)NCBI
mRatBN7.21751,334,921 - 51,377,469 (-)NCBI
Rnor_6.01754,027,859 - 54,070,399 (-)NCBI
Rnor_5.01751,721,961 - 51,764,786 (-)NCBI
RGSC_v3.41759,531,872 - 59,576,151 (-)RGD
Celera1747,342,254 - 47,384,826 (-)RGD
Sequence:
RefSeq Acc Id: XM_006254007   ⟹   XP_006254069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81756,030,421 - 56,072,895 (-)NCBI
mRatBN7.21751,336,346 - 51,377,404 (-)NCBI
Rnor_6.01754,027,871 - 54,070,341 (-)NCBI
Rnor_5.01751,721,961 - 51,764,786 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254008   ⟹   XP_006254070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81756,030,421 - 56,061,638 (-)NCBI
mRatBN7.21751,336,346 - 51,366,154 (-)NCBI
Rnor_6.01754,027,871 - 54,059,037 (-)NCBI
Rnor_5.01751,721,961 - 51,764,786 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771701   ⟹   XP_008769923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81756,030,421 - 56,072,895 (-)NCBI
mRatBN7.21751,336,346 - 51,377,405 (-)NCBI
Rnor_6.01754,027,871 - 54,070,340 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095525   ⟹   XP_038951453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81756,030,421 - 56,061,618 (-)NCBI
mRatBN7.21751,336,346 - 51,366,138 (-)NCBI
RefSeq Acc Id: XM_063276202   ⟹   XP_063132272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81756,030,421 - 56,072,895 (-)NCBI
RefSeq Acc Id: XR_005495256
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81756,032,502 - 56,072,895 (-)NCBI
mRatBN7.21751,337,064 - 51,377,404 (-)NCBI
RefSeq Acc Id: XR_010058837
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81756,032,502 - 56,072,895 (-)NCBI
RefSeq Acc Id: XR_361036
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81756,032,502 - 56,072,895 (-)NCBI
mRatBN7.21751,337,009 - 51,377,403 (-)NCBI
Rnor_6.01754,029,996 - 54,070,339 (-)NCBI
Rnor_5.01751,721,961 - 51,764,786 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001138323   ⟸   NM_001144851
- Peptide Label: precursor
- UniProtKB: D3Z9C4 (UniProtKB/TrEMBL),   A6K9D8 (UniProtKB/TrEMBL),   A0A0G2K550 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254069   ⟸   XM_006254007
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GEP1 (UniProtKB/TrEMBL),   A0A0G2K550 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254070   ⟸   XM_006254008
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GHC5 (UniProtKB/TrEMBL),   A0A0G2K550 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769923   ⟸   XM_008771701
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K550 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073292   ⟸   ENSRNOT00000085150
Ensembl Acc Id: ENSRNOP00000022924   ⟸   ENSRNOT00000022924
RefSeq Acc Id: XP_038951453   ⟸   XM_039095525
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GHC5 (UniProtKB/TrEMBL),   A0A0G2K550 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000088702   ⟸   ENSRNOT00000117768
Ensembl Acc Id: ENSRNOP00000086193   ⟸   ENSRNOT00000105211
RefSeq Acc Id: XP_063132272   ⟸   XM_063276202
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z9C4-F1-model_v2 AlphaFold D3Z9C4 1-504 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700519
Promoter ID:EPDNEW_R11042
Type:initiation region
Name:B3galnt2_1
Description:beta-1,3-N-acetylgalactosaminyltransferase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01754,070,193 - 54,070,253EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306946 AgrOrtholog
BioCyc Gene G2FUF-9062 BioCyc
Ensembl Genes ENSRNOG00000016855 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022924.7 UniProtKB/TrEMBL
  ENSRNOT00000085150.2 UniProtKB/TrEMBL
  ENSRNOT00000105211.1 UniProtKB/TrEMBL
  ENSRNOT00000117768.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
KEGG Report rno:291212 UniProtKB/TrEMBL
NCBI Gene 291212 ENTREZGENE
PANTHER Glyco_trans_31 UniProtKB/TrEMBL
  UDP-GALNAC:BETA-1,3-N-ACETYLGALACTOSAMINYLTRANSFERASE 2 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
PhenoGen B3galnt2 PhenoGen
RatGTEx ENSRNOG00000016855 RatGTEx
UniProt A0A0G2K550 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GEP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GHC5 ENTREZGENE, UniProtKB/TrEMBL
  A6K9D8 ENTREZGENE, UniProtKB/TrEMBL
  D3Z9C4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-06-16 B3galnt2  beta-1,3-N-acetylgalactosaminyltransferase 2  RGD1306946  similar to hypothetical protein MGC39558   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1306946  similar to hypothetical protein MGC39558   RGD1306946_predicted  similar to hypothetical protein MGC39558 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1306946_predicted  similar to hypothetical protein MGC39558 (predicted)  LOC291212_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC291212_predicted  similar to hypothetical protein MGC39558 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL