B3GALNT2 (beta-1,3-N-acetylgalactosaminyltransferase 2) - Rat Genome Database

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Gene: B3GALNT2 (beta-1,3-N-acetylgalactosaminyltransferase 2) Canis lupus familiaris
Analyze
Symbol: B3GALNT2
Name: beta-1,3-N-acetylgalactosaminyltransferase 2
RGD ID: 12401509
Description: ENCODES a protein that exhibits acetylgalactosaminyltransferase activity (inferred); glycosyltransferase activity (inferred); hexosyltransferase activity (inferred); INVOLVED IN protein glycosylation (inferred); protein O-linked glycosylation (inferred); ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); common variable immunodeficiency 14 (ortholog); congenital muscular dystrophy-dystroglycanopathy type A11 (ortholog); FOUND IN endoplasmic reticulum (inferred); Golgi apparatus (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.144,434,987 - 4,489,844 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl44,433,871 - 4,490,903 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha44,441,587 - 4,472,045 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.044,456,828 - 4,511,571 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl44,456,642 - 4,513,898 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.144,468,268 - 4,525,166 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.044,585,762 - 4,640,259 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.044,807,375 - 4,864,252 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
B3GALNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.144,434,987 - 4,489,844 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl44,433,871 - 4,490,903 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha44,441,587 - 4,472,045 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.044,456,828 - 4,511,571 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl44,456,642 - 4,513,898 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.144,468,268 - 4,525,166 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.044,585,762 - 4,640,259 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.044,807,375 - 4,864,252 (+)NCBIUU_Cfam_GSD_1.0
B3GALNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381235,439,796 - 235,504,452 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1235,447,190 - 235,504,452 (-)EnsemblGRCh38hg38GRCh38
GRCh371235,610,505 - 235,667,752 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361233,679,867 - 233,734,404 (-)NCBINCBI36Build 36hg18NCBI36
Build 341231,939,287 - 231,993,822NCBI
Celera1208,853,777 - 208,911,041 (-)NCBICelera
Cytogenetic Map1q42.3NCBI
HuRef1206,062,149 - 206,119,437 (-)NCBIHuRef
CHM1_11236,883,102 - 236,940,357 (-)NCBICHM1_1
T2T-CHM13v2.01234,835,690 - 234,900,322 (-)NCBIT2T-CHM13v2.0
B3galnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391314,129,059 - 14,173,688 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1314,129,054 - 14,173,688 (+)EnsemblGRCm39 Ensembl
GRCm381313,954,474 - 13,999,103 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1313,954,469 - 13,999,103 (+)EnsemblGRCm38mm10GRCm38
MGSCv371314,046,941 - 14,091,335 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361313,746,800 - 13,791,194 (+)NCBIMGSCv36mm8
Celera1314,262,309 - 14,306,767 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map135.29NCBI
B3galnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81756,030,409 - 56,072,952 (-)NCBIGRCr8
mRatBN7.21751,334,921 - 51,377,469 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1751,334,921 - 51,377,469 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1754,503,357 - 54,551,377 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01758,506,292 - 58,554,312 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01752,637,339 - 52,679,775 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01754,027,859 - 54,070,399 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1754,027,859 - 54,070,399 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01751,721,961 - 51,764,786 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41759,531,872 - 59,576,151 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11759,544,788 - 59,586,800 (-)NCBI
Celera1747,342,254 - 47,384,826 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
B3galnt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554924,472,587 - 4,501,531 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554924,472,585 - 4,502,704 (+)NCBIChiLan1.0ChiLan1.0
B3GALNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2113,672,096 - 13,730,953 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,884,188 - 13,943,022 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01211,006,939 - 211,064,445 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11216,018,878 - 216,076,060 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1216,018,886 - 216,076,060 (-)Ensemblpanpan1.1panPan2
B3galnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934440,847,177 - 40,884,307 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648417,012,537 - 17,049,511 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648417,012,403 - 17,049,519 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GALNT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1455,749,473 - 55,818,004 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11455,749,409 - 55,818,738 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21459,874,772 - 59,893,941 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GALNT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12572,614,998 - 72,677,383 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2572,611,475 - 72,677,356 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605574,647,067 - 74,714,036 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3galnt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477514,992,335 - 15,065,970 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477514,992,189 - 15,066,787 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in B3GALNT2
477 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 5 16 5 6 6 6 10 6
Low 1 6 6 1 6 6 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022417399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038662482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_536338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000017927   ⟹   ENSCAFP00000016601
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl44,434,771 - 4,490,903 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000060176   ⟹   ENSCAFP00000048335
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl44,434,771 - 4,490,903 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000060790   ⟹   ENSCAFP00000044649
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl44,434,771 - 4,490,903 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000089560   ⟹   ENSCAFP00000048629
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl44,433,871 - 4,490,903 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845005671   ⟹   ENSCAFP00845004498
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl44,456,642 - 4,513,898 (+)Ensembl
RefSeq Acc Id: XM_038472844   ⟹   XP_038328772
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.144,468,268 - 4,525,166 (+)NCBI
RefSeq Acc Id: XM_038472845   ⟹   XP_038328773
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.144,468,268 - 4,525,166 (+)NCBI
RefSeq Acc Id: XM_038486338   ⟹   XP_038342266
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha44,441,587 - 4,472,045 (+)NCBI
RefSeq Acc Id: XM_038533858   ⟹   XP_038389786
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.044,807,375 - 4,864,252 (+)NCBI
RefSeq Acc Id: XM_038533859   ⟹   XP_038389787
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.044,807,375 - 4,864,252 (+)NCBI
RefSeq Acc Id: XM_038598179   ⟹   XP_038454107
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.044,585,762 - 4,640,259 (+)NCBI
RefSeq Acc Id: XM_038598180   ⟹   XP_038454108
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.044,585,762 - 4,640,259 (+)NCBI
RefSeq Acc Id: XM_038662481   ⟹   XP_038518409
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.044,456,828 - 4,511,571 (+)NCBI
RefSeq Acc Id: XM_038662482   ⟹   XP_038518410
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.044,456,828 - 4,511,571 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000048335   ⟸   ENSCAFT00000060176
RefSeq Acc Id: ENSCAFP00000044649   ⟸   ENSCAFT00000060790
RefSeq Acc Id: ENSCAFP00000016601   ⟸   ENSCAFT00000017927
RefSeq Acc Id: ENSCAFP00000048629   ⟸   ENSCAFT00000089560
RefSeq Acc Id: XP_038328772   ⟸   XM_038472844
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038328773   ⟸   XM_038472845
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038454107   ⟸   XM_038598179
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038454108   ⟸   XM_038598180
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038518409   ⟸   XM_038662481
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PSH9 (UniProtKB/TrEMBL),   A0A8I3N4J0 (UniProtKB/TrEMBL),   A0A8C0REF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038518410   ⟸   XM_038662482
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MMN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038342266   ⟸   XM_038486338
- Peptide Label: isoform X3
- UniProtKB: A0A8P0T1G7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389786   ⟸   XM_038533858
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PSH9 (UniProtKB/TrEMBL),   A0A8C0REF1 (UniProtKB/TrEMBL),   A0A8I3N4J0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389787   ⟸   XM_038533859
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MMN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845004498   ⟸   ENSCAFT00845005671

Promoters
RGD ID:13682862
Promoter ID:EPDNEW_C929
Type:multiple initiation site
Name:B3GALNT2_1
Description:beta-1,3-N-acetylgalactosaminyltransferase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.144,434,938 - 4,434,998EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011268 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006937 UniProtKB/TrEMBL
  ENSCAFG00040001850 UniProtKB/TrEMBL
  ENSCAFG00845003224 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000089560.2 UniProtKB/TrEMBL
  ENSCAFT00030012881.1 UniProtKB/TrEMBL
  ENSCAFT00030012967.1 UniProtKB/TrEMBL
  ENSCAFT00040003494.1 UniProtKB/TrEMBL
  ENSCAFT00845005671 ENTREZGENE
  ENSCAFT00845005671.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
NCBI Gene B3GALNT2 ENTREZGENE
PANTHER PTHR11214 UniProtKB/TrEMBL
  UDP-GALNAC:BETA-1,3-N-ACETYLGALACTOSAMINYLTRANSFERASE 2 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
UniProt A0A8C0MMN0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PSH9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0REF1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N4J0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T1G7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38332 ENTREZGENE