B3GALNT2 (beta-1,3-N-acetylgalactosaminyltransferase 2) - Rat Genome Database
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Gene: B3GALNT2 (beta-1,3-N-acetylgalactosaminyltransferase 2) Sus scrofa
Analyze
Symbol: B3GALNT2
Name: beta-1,3-N-acetylgalactosaminyltransferase 2
RGD ID: 14007420
Description: ENCODES a protein that exhibits acetylgalactosaminyltransferase activity (ortholog); INVOLVED IN protein O-linked glycosylation (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A11 (ortholog); genetic disease (ortholog); hypoparathyroidism-retardation-dysmorphism syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1455,749,472 - 55,818,012 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11455,749,409 - 55,818,738 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21459,874,772 - 59,893,941 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
B3GALNT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1455,749,472 - 55,818,012 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11455,749,409 - 55,818,738 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21459,874,772 - 59,893,941 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GALNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1235,447,190 - 235,504,452 (-)EnsemblGRCh38hg38GRCh38
GRCh381235,440,654 - 235,504,481 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371235,610,505 - 235,667,752 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361233,679,867 - 233,734,404 (-)NCBINCBI36hg18NCBI36
Build 341231,939,287 - 231,993,822NCBI
Celera1208,853,777 - 208,911,041 (-)NCBI
Cytogenetic Map1q42.3NCBI
HuRef1206,062,149 - 206,119,437 (-)NCBIHuRef
CHM1_11236,883,102 - 236,940,357 (-)NCBICHM1_1
B3galnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391314,129,059 - 14,173,688 (+)NCBIGRCm39mm39
GRCm39 Ensembl1314,129,054 - 14,173,688 (+)Ensembl
GRCm381313,954,474 - 13,999,103 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1313,954,469 - 13,999,103 (+)EnsemblGRCm38mm10GRCm38
MGSCv371314,046,941 - 14,091,335 (+)NCBIGRCm37mm9NCBIm37
MGSCv361313,746,800 - 13,791,194 (+)NCBImm8
Celera1314,262,309 - 14,306,767 (+)NCBICelera
Cytogenetic Map13A1NCBI
B3galnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21751,334,921 - 51,377,469 (-)NCBI
Rnor_6.0 Ensembl1754,027,859 - 54,070,399 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01754,027,859 - 54,070,399 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01751,721,961 - 51,764,786 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41759,531,872 - 59,576,151 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11759,544,788 - 59,586,800 (-)NCBI
Celera1747,342,254 - 47,384,826 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
B3galnt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554924,472,587 - 4,501,531 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554924,472,585 - 4,502,704 (+)NCBIChiLan1.0ChiLan1.0
B3GALNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11216,018,878 - 216,076,060 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1216,018,886 - 216,076,060 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01211,006,939 - 211,064,445 (-)NCBIMhudiblu_PPA_v0panPan3
B3GALNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl44,433,871 - 4,490,903 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.144,434,987 - 4,489,844 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
B3galnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493648417,012,403 - 17,049,519 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GALNT2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12572,614,998 - 72,677,383 (-)NCBI
ChlSab1.1 Ensembl2572,611,475 - 72,677,356 (-)Ensembl
B3galnt2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477514,992,189 - 15,066,787 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 3 2 4 2 1
Low 9 4 5 19 2 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000039089   ⟹   ENSSSCP00000043246
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1455,749,472 - 55,818,005 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000091574   ⟹   ENSSSCP00000064213
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1455,767,833 - 55,818,012 (+)Ensembl
RefSeq Acc Id: XM_021074398   ⟹   XP_020930057
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11455,749,409 - 55,818,738 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002338968
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11455,749,410 - 55,818,738 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020930057 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020930057   ⟸   XM_021074398
- Sequence:
RefSeq Acc Id: ENSSSCP00000043246   ⟸   ENSSSCT00000039089
RefSeq Acc Id: ENSSSCP00000064213   ⟸   ENSSSCT00000091574


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033692 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070017244 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000043246 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000064213 UniProtKB/TrEMBL
  ENSSSCP00070028401 UniProtKB/TrEMBL
  ENSSSCP00070028404 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000039089 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000091574 UniProtKB/TrEMBL
  ENSSSCT00070034009 UniProtKB/TrEMBL
  ENSSSCT00070034012 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
NCBI Gene B3GALNT2 ENTREZGENE
PANTHER PTHR11214 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
UniProt A0A287AH62_PIG UniProtKB/TrEMBL
  A0A4X1UEG3_PIG UniProtKB/TrEMBL
  A0A5G2QHE7_PIG UniProtKB/TrEMBL
VGNC ID VGNC:85715 ENTREZGENE