Glipr1 (GLI pathogenesis-related 1) - Rat Genome Database

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Gene: Glipr1 (GLI pathogenesis-related 1) Rattus norvegicus
Analyze
Symbol: Glipr1
Name: GLI pathogenesis-related 1
RGD ID: 1305978
Description: Predicted to be located in extracellular region and membrane. Predicted to be active in extracellular space. Orthologous to human GLIPR1 (GLI pathogenesis related 1); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GLI pathogenesis-related 1 (glioma); glioma pathogenesis-related protein 1; LOC299783; MGC108941
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8749,373,579 - 49,399,190 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl749,373,581 - 49,384,640 (-)EnsemblGRCr8
mRatBN7.2747,487,342 - 47,498,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl747,487,345 - 47,498,429 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx749,389,423 - 49,400,437 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0751,592,505 - 51,603,519 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0751,370,326 - 51,381,340 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0754,767,828 - 54,778,823 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl754,767,827 - 54,778,848 (-)Ensemblrn6Rnor6.0
Rnor_5.0754,792,114 - 54,803,109 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4751,081,712 - 51,092,707 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera744,284,533 - 44,295,529 (-)NCBICelera
RGSC_v3.1751,102,155 - 51,113,149 (-)NCBI
Cytogenetic Map7q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
1-nitropyrene  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
butanal  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
diethylstilbestrol  (ISO)
dioxygen  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fragrance  (ISO)
fructose  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glucose  (ISO)
glycidol  (EXP)
glyphosate  (ISO)
inulin  (ISO)
iron dichloride  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
lidocaine  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (EXP,ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (EXP)
naled  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nicotine  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
quercitrin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
torcetrapib  (ISO)
triadimefon  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19946888  


Genomics

Comparative Map Data
Glipr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8749,373,579 - 49,399,190 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl749,373,581 - 49,384,640 (-)EnsemblGRCr8
mRatBN7.2747,487,342 - 47,498,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl747,487,345 - 47,498,429 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx749,389,423 - 49,400,437 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0751,592,505 - 51,603,519 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0751,370,326 - 51,381,340 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0754,767,828 - 54,778,823 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl754,767,827 - 54,778,848 (-)Ensemblrn6Rnor6.0
Rnor_5.0754,792,114 - 54,803,109 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4751,081,712 - 51,092,707 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera744,284,533 - 44,295,529 (-)NCBICelera
RGSC_v3.1751,102,155 - 51,113,149 (-)NCBI
Cytogenetic Map7q22NCBI
GLIPR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381275,480,755 - 75,503,863 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1275,480,753 - 75,503,863 (+)Ensemblhg38GRCh38
GRCh371275,874,535 - 75,897,643 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361274,160,780 - 74,181,983 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341274,160,800 - 74,179,158NCBI
Celera1275,541,873 - 75,563,079 (+)NCBICelera
Cytogenetic Map12q21.2NCBI
HuRef1272,924,136 - 72,945,346 (+)NCBIHuRef
CHM1_11275,839,936 - 75,861,131 (+)NCBICHM1_1
T2T-CHM13v2.01275,455,443 - 75,478,551 (+)NCBIT2T-CHM13v2.0
Glipr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910111,821,353 - 111,838,539 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10111,821,353 - 111,838,536 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3810111,985,448 - 112,002,639 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10111,985,448 - 112,002,631 (-)Ensemblmm10GRCm38
MGSCv3710111,422,504 - 111,434,320 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3610111,389,567 - 111,401,305 (-)NCBIMGSCv36mm8
Celera10113,931,381 - 113,943,197 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1059.98NCBI
Glipr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540514,840,672 - 14,850,857 (+)Ensembl
ChiLan1.0NW_00495540514,840,731 - 14,851,111 (+)NCBIChiLan1.0ChiLan1.0
GLIPR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21083,522,948 - 83,545,895 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11283,519,390 - 83,541,697 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01273,006,877 - 73,028,515 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11275,858,693 - 75,879,705 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1275,858,693 - 75,879,705 (+)EnsemblpanPan2panpan1.1
GLIPR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11015,958,923 - 15,977,013 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1015,958,971 - 15,977,000 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1015,905,722 - 15,924,082 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01016,150,460 - 16,168,603 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1016,150,586 - 16,169,476 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11015,960,089 - 15,978,448 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01016,214,290 - 16,232,651 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01016,339,353 - 16,357,709 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Glipr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494541,778,598 - 41,804,606 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365683,933,134 - 3,950,422 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365683,933,098 - 3,949,508 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLIPR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl538,766,998 - 38,815,597 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1538,758,594 - 38,811,857 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2542,321,998 - 42,373,787 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLIPR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11171,086,530 - 71,104,811 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1171,086,554 - 71,104,778 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037174,459,067 - 174,477,416 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glipr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475022,556,713 - 22,573,699 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475022,556,443 - 22,610,963 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Glipr1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11190,206,481 - 190,217,709 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Glipr1
258 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:28
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000005399
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74913799967614020Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74299622658678836Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72862457565788017Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat

Markers in Region
RH131504  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2747,488,318 - 47,488,499 (+)MAPPERmRatBN7.2
Rnor_6.0754,768,805 - 54,768,985NCBIRnor6.0
Rnor_5.0754,793,091 - 54,793,271UniSTSRnor5.0
RGSC_v3.4751,082,689 - 51,082,869UniSTSRGSC3.4
Celera744,285,510 - 44,285,690UniSTS
RH 3.4 Map7411.3UniSTS
Cytogenetic Map7q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 92 59 6 356 192 11 139 81 92 31 12 12

Sequence


Ensembl Acc Id: ENSRNOT00000005399   ⟹   ENSRNOP00000005399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl749,373,581 - 49,384,594 (-)Ensembl
mRatBN7.2 Ensembl747,487,346 - 47,498,429 (-)Ensembl
Rnor_6.0 Ensembl754,767,827 - 54,778,848 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094244   ⟹   ENSRNOP00000079444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl749,373,652 - 49,384,640 (-)Ensembl
mRatBN7.2 Ensembl747,487,345 - 47,498,413 (-)Ensembl
RefSeq Acc Id: NM_001011987   ⟹   NP_001011987
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8749,373,579 - 49,384,574 (-)NCBI
mRatBN7.2747,487,342 - 47,498,337 (-)NCBI
Rnor_6.0754,767,828 - 54,778,823 (-)NCBI
Rnor_5.0754,792,114 - 54,803,109 (-)NCBI
RGSC_v3.4751,081,712 - 51,092,707 (-)RGD
Celera744,284,533 - 44,295,529 (-)RGD
Sequence:
RefSeq Acc Id: XM_039078708   ⟹   XP_038934636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8749,373,579 - 49,399,190 (-)NCBI
mRatBN7.2747,487,342 - 47,498,965 (-)NCBI
RefSeq Acc Id: XM_039078709   ⟹   XP_038934637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8749,373,579 - 49,385,306 (-)NCBI
mRatBN7.2747,487,345 - 47,498,971 (-)NCBI
RefSeq Acc Id: XR_010052953
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8749,373,888 - 49,385,307 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001011987 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934636 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934637 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89858 (Get FASTA)   NCBI Sequence Viewer  
  EDM16716 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005399
  ENSRNOP00000005399.4
  ENSRNOP00000079444.2
RefSeq Acc Id: NP_001011987   ⟸   NM_001011987
- Peptide Label: precursor
- UniProtKB: Q5FVN7 (UniProtKB/TrEMBL),   A6IGI2 (UniProtKB/TrEMBL),   A0A8I5ZNI3 (UniProtKB/TrEMBL),   F7EQZ0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005399   ⟸   ENSRNOT00000005399
RefSeq Acc Id: XP_038934636   ⟸   XM_039078708
- Peptide Label: isoform X1
- UniProtKB: Q5FVN7 (UniProtKB/TrEMBL),   A6IGI2 (UniProtKB/TrEMBL),   A0A8I5ZNI3 (UniProtKB/TrEMBL),   F7EQZ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934637   ⟸   XM_039078709
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000079444   ⟸   ENSRNOT00000094244
Protein Domains
SCP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVN7-F1-model_v2 AlphaFold Q5FVN7 1-251 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695193
Promoter ID:EPDNEW_R5717
Type:initiation region
Name:Glipr1_1
Description:GLI pathogenesis-related 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0754,778,829 - 54,778,889EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305978 AgrOrtholog
BioCyc Gene G2FUF-34104 BioCyc
Ensembl Genes ENSRNOG00000026644 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005399 ENTREZGENE
  ENSRNOT00000005399.9 UniProtKB/TrEMBL
  ENSRNOT00000094244.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.33.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7384037 IMAGE-MGC_LOAD
InterPro Allrgn_V5/Tpx1 UniProtKB/TrEMBL
  Allrgn_V5/Tpx1_CS UniProtKB/TrEMBL
  CAP_sf UniProtKB/TrEMBL
  SCP-like_extracellular UniProtKB/TrEMBL
  V5_allergen UniProtKB/TrEMBL
KEGG Report rno:299783 UniProtKB/TrEMBL
MGC_CLONE MGC:108941 IMAGE-MGC_LOAD
NCBI Gene 299783 ENTREZGENE
PANTHER Allrgn_V5/Tpx1 UniProtKB/TrEMBL
Pfam SCP UniProtKB/TrEMBL
PhenoGen Glipr1 PhenoGen
PRINTS V5ALLERGEN UniProtKB/TrEMBL
  V5TPXLIKE UniProtKB/TrEMBL
PROSITE CRISP_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026644 RatGTEx
SMART SCP UniProtKB/TrEMBL
Superfamily-SCOP SCP-like_extracellular UniProtKB/TrEMBL
UniProt A0A8I5ZNI3 ENTREZGENE, UniProtKB/TrEMBL
  A6IGI2 ENTREZGENE, UniProtKB/TrEMBL
  F7EQZ0 ENTREZGENE, UniProtKB/TrEMBL
  Q5FVN7 ENTREZGENE
UniProt Secondary Q5FVN7 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-23 Glipr1  GLI pathogenesis-related 1  Glipr1  GLI pathogenesis-related 1 (glioma)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Glipr1  GLI pathogenesis-related 1 (glioma)  Glipr1_predicted  GLI pathogenesis-related 1 (glioma) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Glipr1_predicted  GLI pathogenesis-related 1 (glioma) (predicted)      Symbol and Name status set to approved 70820 APPROVED