Ephb3 (Eph receptor B3) - Rat Genome Database

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Gene: Ephb3 (Eph receptor B3) Rattus norvegicus
Analyze
Symbol: Ephb3
Name: Eph receptor B3
RGD ID: 1305602
Description: Predicted to enable axon guidance receptor activity and transmembrane-ephrin receptor activity. Predicted to be involved in several processes, including ephrin receptor signaling pathway; neuron projection development; and tube morphogenesis. Predicted to act upstream of or within central nervous system projection neuron axonogenesis and retinal ganglion cell axon guidance. Predicted to be active in dendrite and plasma membrane. Biomarker of malaria. Orthologous to human EPHB3 (EPH receptor B3); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EPH-like tyrosine kinase-2; ephrin type-B receptor 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,345,098 - 93,363,775 (-)NCBIGRCr8
mRatBN7.21179,840,668 - 79,859,345 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1179,840,668 - 79,859,370 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1188,564,211 - 88,582,906 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,217,599 - 81,236,296 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,278,658 - 80,297,355 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,527,960 - 83,546,742 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,527,962 - 83,546,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01186,602,390 - 86,621,103 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,027,632 - 82,046,332 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11182,085,218 - 82,103,882 (-)NCBI
Celera1178,683,234 - 78,701,933 (-)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
15-acetyldeoxynivalenol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2-naphthylamine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP,ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clozapine  (ISO)
cocaine  (EXP)
copper(II) chloride  (ISO)
Cuprizon  (ISO)
DDE  (ISO)
dibutyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
lead diacetate  (EXP)
lipopolysaccharide  (ISO)
methoxychlor  (EXP)
methylisothiazolinone  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
nicotine  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP)
ponatinib  (ISO)
potassium dichromate  (ISO)
propanal  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zearalenone  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
dendrite  (IBA)
plasma membrane  (IBA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. The receptor tyrosine kinase EphB2 promotes hepatic fibrosis in mice. Mimche PN, etal., Hepatology. 2015 Sep;62(3):900-14. doi: 10.1002/hep.27792. Epub 2015 Apr 22.
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8397371   PMID:8947026   PMID:9990854   PMID:10839360   PMID:11532925   PMID:12408869   PMID:12797382   PMID:12971893   PMID:14691139   PMID:15223334   PMID:15536074   PMID:17103029  
PMID:17719550   PMID:19598115   PMID:25851023   PMID:26930615   PMID:38143048  


Genomics

Comparative Map Data
Ephb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,345,098 - 93,363,775 (-)NCBIGRCr8
mRatBN7.21179,840,668 - 79,859,345 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1179,840,668 - 79,859,370 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1188,564,211 - 88,582,906 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,217,599 - 81,236,296 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,278,658 - 80,297,355 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,527,960 - 83,546,742 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,527,962 - 83,546,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01186,602,390 - 86,621,103 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,027,632 - 82,046,332 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11182,085,218 - 82,103,882 (-)NCBI
Celera1178,683,234 - 78,701,933 (-)NCBICelera
Cytogenetic Map11q23NCBI
EPHB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383184,561,785 - 184,582,408 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3184,561,785 - 184,582,408 (+)EnsemblGRCh38hg38GRCh38
GRCh373184,279,573 - 184,300,196 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363185,762,281 - 185,782,890 (+)NCBINCBI36Build 36hg18NCBI36
Build 343185,762,288 - 185,782,897NCBI
Celera3182,727,556 - 182,748,228 (+)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3181,691,476 - 181,712,092 (+)NCBIHuRef
CHM1_13184,243,646 - 184,264,249 (+)NCBICHM1_1
T2T-CHM13v2.03187,377,272 - 187,397,899 (+)NCBIT2T-CHM13v2.0
Ephb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391621,023,530 - 21,042,054 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1621,023,505 - 21,042,055 (+)EnsemblGRCm39 Ensembl
GRCm381621,204,620 - 21,223,309 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1621,204,755 - 21,223,305 (+)EnsemblGRCm38mm10GRCm38
MGSCv371621,204,868 - 21,223,377 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361621,118,778 - 21,137,287 (+)NCBIMGSCv36mm8
Celera1621,770,110 - 21,788,619 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1612.62NCBI
Ephb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542022,901,337 - 22,920,712 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542022,900,588 - 22,919,924 (-)NCBIChiLan1.0ChiLan1.0
EPHB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22182,440,190 - 182,460,739 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13182,445,378 - 182,465,453 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03181,604,188 - 181,624,744 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13190,093,880 - 190,104,905 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3190,089,522 - 190,104,905 (+)Ensemblpanpan1.1panPan2
EPHB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13417,422,746 - 17,433,769 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3417,422,842 - 17,462,954 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3421,497,184 - 21,517,229 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03417,319,566 - 17,339,610 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3417,319,583 - 17,338,836 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13417,356,348 - 17,376,380 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03417,352,202 - 17,372,221 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03417,580,828 - 17,600,882 (+)NCBIUU_Cfam_GSD_1.0
Ephb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602119,194,726 - 119,205,515 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365785,287,340 - 5,298,142 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365785,286,580 - 5,297,369 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPHB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13122,467,588 - 122,488,292 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113122,467,561 - 122,488,296 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213131,955,238 - 131,975,350 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPHB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1154,831,980 - 4,852,586 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl154,832,750 - 4,852,152 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606313,601,291 - 13,621,835 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ephb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473071,965,108 - 71,982,593 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473071,964,337 - 71,983,021 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ephb3
109 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:123
Interacting mature miRNAs:133
Transcripts:ENSRNOT00000044896
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat

Markers in Region
RH70256  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21179,840,740 - 79,840,934 (+)MAPPERmRatBN7.2
Rnor_6.01183,528,033 - 83,528,226NCBIRnor6.0
Rnor_5.01186,602,461 - 86,602,654UniSTSRnor5.0
RGSC_v3.41182,027,703 - 82,027,896UniSTSRGSC3.4
Celera1178,683,305 - 78,683,498UniSTS
Cytogenetic Map11q23UniSTS
Z49086  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21179,840,740 - 79,840,940 (+)MAPPERmRatBN7.2
Rnor_6.01183,528,033 - 83,528,232NCBIRnor6.0
Rnor_5.01186,602,461 - 86,602,660UniSTSRnor5.0
RGSC_v3.41182,027,703 - 82,027,902UniSTSRGSC3.4
Celera1178,683,305 - 78,683,504UniSTS
Cytogenetic Map11q23UniSTS
Ephb3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21179,840,725 - 79,841,420 (+)MAPPERmRatBN7.2
Rnor_6.01183,528,018 - 83,528,712NCBIRnor6.0
Rnor_5.01186,602,446 - 86,603,140UniSTSRnor5.0
RGSC_v3.41182,027,688 - 82,028,382UniSTSRGSC3.4
Celera1178,683,290 - 78,683,984UniSTS
Cytogenetic Map11q23UniSTS
Ephb3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21179,849,766 - 79,851,200 (+)MAPPERmRatBN7.2
Rnor_6.01183,537,071 - 83,538,504NCBIRnor6.0
Rnor_5.01186,611,499 - 86,612,932UniSTSRnor5.0
RGSC_v3.41182,036,729 - 82,038,162UniSTSRGSC3.4
Celera1178,692,329 - 78,693,762UniSTS
Cytogenetic Map11q23UniSTS
Ephb3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21179,841,242 - 79,841,421 (+)MAPPERmRatBN7.2
Rnor_6.01183,528,535 - 83,528,713NCBIRnor6.0
Rnor_5.01186,602,963 - 86,603,141UniSTSRnor5.0
RGSC_v3.41182,028,205 - 82,028,383UniSTSRGSC3.4
Celera1178,683,807 - 78,683,985UniSTS
Cytogenetic Map11q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000044896   ⟹   ENSRNOP00000039489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1179,840,670 - 79,859,370 (-)Ensembl
Rnor_6.0 Ensembl1183,527,962 - 83,546,674 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119527   ⟹   ENSRNOP00000083114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1179,840,668 - 79,859,370 (-)Ensembl
RefSeq Acc Id: NM_001414988   ⟹   NP_001401917
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,345,098 - 93,363,775 (-)NCBI
mRatBN7.21179,840,668 - 79,859,345 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001401917 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL78031 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000039489.3
  ENSRNOP00000083114.1
Ensembl Acc Id: ENSRNOP00000039489   ⟸   ENSRNOT00000044896
Ensembl Acc Id: ENSRNOP00000083114   ⟸   ENSRNOT00000119527
RefSeq Acc Id: NP_001401917   ⟸   NM_001414988
- Peptide Label: precursor
- UniProtKB: A0A8I5ZVE3 (UniProtKB/TrEMBL)
Protein Domains
Eph LBD   Fibronectin type-III   Protein kinase   SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZH39-F1-model_v2 AlphaFold D3ZH39 1-1048 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698265
Promoter ID:EPDNEW_R8790
Type:multiple initiation site
Name:Ephb3_1
Description:Eph receptor B3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01183,546,649 - 83,546,709EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305602 AgrOrtholog
BioCyc Gene G2FUF-20772 BioCyc
Ensembl Genes ENSRNOG00000031801 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044896.4 UniProtKB/TrEMBL
  ENSRNOT00000119527.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  ephrin a2 ectodomain UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro Eph_TM UniProtKB/TrEMBL
  EphB3_rcpt_lig-bd UniProtKB/TrEMBL
  Ephrin_rcpt_lig-bd UniProtKB/TrEMBL
  Ephrin_rcpt_TKs UniProtKB/TrEMBL
  Fibronectin_type3 UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Galactose-bd-like UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Kinase-like_dom UniProtKB/TrEMBL
  Prot_kinase_cat_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr-kin_ephrin_A/B_rcpt-like UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr_kinase_ephrin_rcpt UniProtKB/TrEMBL
  Tyr_kinase_rcpt_V_CS UniProtKB/TrEMBL
NCBI Gene 287989 ENTREZGENE
PANTHER EPH RECEPTOR A5 UniProtKB/TrEMBL
  EPHRIN TYPE-B RECEPTOR 3 UniProtKB/TrEMBL
Pfam EphA2_TM UniProtKB/TrEMBL
  Ephrin_lbd UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  GCC2_GCC3 UniProtKB/TrEMBL
  Pkinase_Tyr UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
PhenoGen Ephb3 PhenoGen
PIRSF TyrPK_ephrin_receptor UniProtKB/TrEMBL
PRINTS FNTYPEIII UniProtKB/TrEMBL
  TYRKINASE UniProtKB/TrEMBL
PROSITE EPH_LBD UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_V_1 UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_V_2 UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031801 RatGTEx
SMART EPH_lbd UniProtKB/TrEMBL
  Ephrin_rec_like UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  TyrKc UniProtKB/TrEMBL
Superfamily-SCOP FN_III-like UniProtKB/TrEMBL
  Gal_bind_like UniProtKB/TrEMBL
  Kinase_like UniProtKB/TrEMBL
  SAM_homology UniProtKB/TrEMBL
UniProt A0A8I5ZVE3 ENTREZGENE, UniProtKB/TrEMBL
  A6JS76_RAT UniProtKB/TrEMBL
  D3ZH39_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ephb3  Eph receptor B3   Ephb3_predicted  Eph receptor B3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ephb3_predicted  Eph receptor B3 (predicted)      Symbol and Name status set to approved 70820 APPROVED