Poglut2 (protein O-glucosyltransferase 2)

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Gene: Poglut2 (protein O-glucosyltransferase 2) Rattus norvegicus

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Symbol:

Poglut2

Name:

protein O-glucosyltransferase 2

RGD ID:

1304684

Description:

Predicted to enable UDP-glucosyltransferase activity and UDP-xylosyltransferase activity. Predicted to be involved in protein O-linked glycosylation via serine. Predicted to be located in cytosol; endoplasmic reticulum lumen; and nucleoplasm. Predicted to be active in endomembrane system. Orthologous to human POGLUT2 (protein O-glucosyltransferase 2); INTERACTS WITH 17alpha-ethynylestradiol; 3-chloropropane-1,2-diol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

KDEL (Lys-Asp-Glu-Leu) containing 1; KDEL motif containing 1; KDEL motif-containing protein 1; Kdelc1; LOC316370; MGC189327

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Related Pseudogenes:

Poglut2-ps1

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	53,748,484 - 53,801,453 (-)	NCBI		GRCr8
mRatBN7.2	9	46,256,388 - 46,268,714 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	46,256,390 - 46,268,532 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	54,771,869 - 54,783,977 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	59,894,669 - 59,906,773 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	58,174,906 - 58,187,013 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	50,872,492 - 50,884,596 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	50,872,492 - 50,884,596 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	50,539,453 - 50,551,557 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	43,194,771 - 43,207,358 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	43,196,186 - 43,208,615 (-)	NCBI
Celera	9	43,960,103 - 43,972,186 (-)	NCBI		Celera
Cytogenetic Map	9	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Anal Atresia, Hypospadias, and Penoscrotal Inversion (ISO)

Evans Syndrome, Immunodeficiency, and Premature Immunosenescence associated with Tripeptidyl-Peptidase II Deficiency (ISO)

holoprosencephaly 5 (ISO)

propionic acidemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

celecoxib (ISO)

CGP 52608 (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diazinon (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

glafenine (EXP)

hydroquinone O-beta-D-glucopyranoside (ISO)

indometacin (ISO)

inulin (ISO)

iron atom (ISO)

iron(0) (ISO)

ivermectin (ISO)

kojic acid (ISO)

methapyrilene (EXP)

nickel sulfate (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

quercetin (ISO)

serpentine asbestos (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein O-linked glycosylation via serine (ISO)

Cellular Component

cytosol (IEA,ISO)

endomembrane system (IBA)

endoplasmic reticulum lumen (ISO)

nucleoplasm (IEA,ISO)

Molecular Function

glucosyltransferase activity (IBA)

UDP-glucosyltransferase activity (ISO)

UDP-xylosyltransferase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11167020	PMID:12477932	PMID:30127001

Genomics

Comparative Map Data

Poglut2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	53,748,484 - 53,801,453 (-)	NCBI		GRCr8
mRatBN7.2	9	46,256,388 - 46,268,714 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	46,256,390 - 46,268,532 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	54,771,869 - 54,783,977 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	59,894,669 - 59,906,773 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	58,174,906 - 58,187,013 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	50,872,492 - 50,884,596 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	50,872,492 - 50,884,596 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	50,539,453 - 50,551,557 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	43,194,771 - 43,207,358 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	43,196,186 - 43,208,615 (-)	NCBI
Celera	9	43,960,103 - 43,972,186 (-)	NCBI		Celera
Cytogenetic Map	9	q22	NCBI

POGLUT2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	102,784,281 - 102,798,976 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	102,784,281 - 102,799,040 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	103,436,631 - 103,451,326 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	102,234,632 - 102,249,358 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	102,234,632 - 102,249,358	NCBI
Celera	13	84,281,120 - 84,295,885 (-)	NCBI		Celera
Cytogenetic Map	13	q33.1	NCBI
HuRef	13	84,028,978 - 84,043,745 (-)	NCBI		HuRef
CHM1_1	13	103,406,079 - 103,420,850 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	102,002,466 - 102,017,152 (-)	NCBI		T2T-CHM13v2.0

Poglut2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	44,143,060 - 44,158,844 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	44,145,706 - 44,157,968 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	44,106,546 - 44,118,880 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	44,106,546 - 44,118,808 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	44,163,391 - 44,175,618 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	44,051,092 - 44,063,319 (-)	NCBI		MGSCv36	mm8
Celera	1	44,449,999 - 44,462,220 (-)	NCBI		Celera
Cytogenetic Map	1	C1.1	NCBI
cM Map	1	23.54	NCBI

Poglut2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955404	8,358,542 - 8,374,328 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955404	8,358,542 - 8,374,216 (+)	NCBI	ChiLan1.0	ChiLan1.0

POGLUT2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	104,301,616 - 104,316,338 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	102,971,156 - 102,985,819 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	83,944,645 - 83,959,313 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	103,081,650 - 103,096,378 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	103,081,650 - 103,096,378 (-)	Ensembl	panpan1.1		panPan2

POGLUT2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	52,274,616 - 52,295,981 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	52,146,466 - 52,372,304 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	52,063,032 - 52,075,652 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	52,731,044 - 52,743,677 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	52,731,047 - 52,743,646 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	52,383,586 - 52,396,199 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	52,399,690 - 52,412,325 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	52,440,895 - 52,453,529 (-)	NCBI		UU_Cfam_GSD_1.0

Poglut2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	187,666,770 - 187,678,684 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	8,273,497 - 8,286,494 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	8,273,517 - 8,285,384 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POGLUT2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	71,094,223 - 71,110,396 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	71,095,116 - 71,110,490 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	78,386,611 - 78,496,441 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

POGLUT2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	81,338,288 - 81,360,736 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	81,331,614 - 81,360,706 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666046	37,875,275 - 37,897,718 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Poglut2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	8,698,617 - 8,711,241 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624793	8,698,481 - 8,711,151 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Poglut2
45 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	118
Count of miRNA genes:	100
Interacting mature miRNAs:	108
Transcripts:	ENSRNOT00000016285
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	23754024	61381613	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
631680	Cm11	Cardiac mass QTL 11	3.1	0.00089	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	9	20430519	65430519	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	23754024	58157242	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	22071200	67071200	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
9589133	Insul26	Insulin level QTL 26	17.96	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	9	8952560	53952560	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5109826	50109826	Rat
7411609	Foco16	Food consumption QTL 16	25.6	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	8952560	53952560	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
11353947	Bp392	Blood pressure QTL 392			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	7283252	52283252	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
1598823	Memor16	Memory QTL 16	1.9		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	22133322	49968732	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	27468639	72468639	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001277228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC085943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016285 ⟹ ENSRNOP00000016285

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	46,256,390 - 46,268,532 (-)	Ensembl
Rnor_6.0 Ensembl	9	50,872,492 - 50,884,596 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109174 ⟹ ENSRNOP00000093048

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	46,256,390 - 46,268,532 (-)	Ensembl

RefSeq Acc Id:

NM_001277228 ⟹ NP_001264157

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	53,748,484 - 53,760,588 (-)	NCBI
mRatBN7.2	9	46,256,388 - 46,268,492 (-)	NCBI
Rnor_6.0	9	50,872,492 - 50,884,596 (-)	NCBI
Rnor_5.0	9	50,539,453 - 50,551,557 (-)	NCBI
Celera	9	43,960,103 - 43,972,186 (-)	NCBI

Sequence:

show sequence

AGTAACTCCAGTTTGTCATTGTCCGGAGAAAGGAGCCTGCGGTTCTTACCCGGTTCAGCAGAAC
GAGTGGCATCCTTCTCCTGGACATGCTCGGATTGTAACATTCCTGAGCACAGCGTAGTCCCACT
CGCGGACCTCGCACATCAAGCGACACTTTAGGGACCTCGACTGCTGCTAGGACTGACCACCGTA
CAACTACCTACCCAGGCTAGCTCGGTCCACTTAGCACATTTGCATTTATCGTGGATCTTCCCAG
ACTCGGTCTTGTAAATGTTCAGCATTTCGCTGCTTTCCTGCCTTTTTCTGGGGACTGTGCCAGC
ACTTGCCCAGACCCGTGGAGAGAGGAGGCTGAGCCCAGAGAAGAGCGAAATATGGGGACCCGGG
CTAAAAGCACACGTGGTCCTTCCTGCCCGCTATTTCTACATTCGGGCGGTGGATACCTCAGGGG
AACAGTTTACATCTTCTCCAGGAGAAAAGGTGTTCCAGGTTCAAATCTCAGCACCTGATGAGCA
GTTCACTAGAGTTGGTGTCCAGGTTTTAGATCGAAAGGATGGGTCCTTTATAGTGAGATATAGA
ATGTATGCAAGCTACAGAAATCTGAAGATAGAGGTTAAACACCATGGGCAACATGTCGCCAAGT
CTCCTTATATTTTAAGAGGACCAGTTTACCACGAGAACTGTGACTGCCCTCTGGAAGACAGTGC
AGCCTGGCTACGGGAGATGAACTGTCCAGAAACTATCACTCAGATTCAGAAAGATCTGTCACAT
TTCCCTACTGTTGATCCTGAAAAGATTGCAGCAGAAATCCCAAAACGATTTGGACAGAGGCAAA
GCCTATGTCACTATACCTTAAAGGACAATAAGGTTTACATCAAGACTCACGGTGAGCATGTTGG
CTTTAGGATTTTCATGGATGCAATACTACTGTCGTTGACTAGAAAGGTGAGGATGCCAGAAGTG
GAATTTTTTGTTAATTTGGGAGACTGGCCTTTGGAGAAAAAGAAATCCACCTCCAACATTCAGC
CGATTTTTTCCTGGTGTGGCTCCACAGAGTCCAGGGATATCGTGATGCCTACGTATGACCTGAC
TGACTCTGTTCTAGAAACCATGGGCCGAGTAAGTCTGGATATGATGTCGGTGCAAGCTAACACA
GGGCCTCCCTGGGAAAGTAAGAATTCCACAGCTGTCTGGAGGGGCCGAGACAGCCGCAAAGAAA
GACTAGAGCTGGTAAAGCTTAGCAGAAAACATCCAGAGCTCATCGATGCCGCTTTCACGAATTT
CTTCTTCTTTAAACACGATGAGAGCCTGTATGGGCCCATTGTGAAACACATTTCATTTTTTGAT
TTCTTCAAGCACAAGTATCAGATAAATGTTGACGGCACTGTGGCAGCATACCGGTTGCCCTATC
TCCTGGTAGGCGATAGTGTCGTCCTGAAGCAGGACTCCATCTACTACGAGCATTTTTACAATGA
ACTGCAGCCCTGGAAACACTACATTCCAGTGAAAAGCAACCTAAGTGATCTGCTGGAAAAACTC
AAGTGGGCGAGAGACCACGATGCGGAGGCAAAGAAGATAGCAAAAGCAGGACAAGAATTTGCAA
GAAACAATCTAATGGGTGATGATATATTCTGTTATTACTTCAAGCTGTTCCAGGGCTATGCCAA
TTTACAAGTGAGTGAGCCTCAAATTCGAGAGGGTATGAAGAGGGTAGAGCCACAGTCTGAGGAT
GACCTCTTCCCTTGCACATGCCATAGGAAAAAGGCCAAAGATGAACTCTGATATGTAAAATATC
TTCTGTTCAAATGATGGTGCTCTGAAGACACTTTACTATAAAGATTATTTTTAAACTTCACGGA
CAATGTAAAATTTACTTGTGACCATTTACTTCCTCACAGTATTTCTTCTTATACAGTGTTCCCA
TGACTGTCTTTTACATCACATTTTAAAGTTTTTATAATAAAACTGGCTTTATTTTAAGA

hide sequence

RefSeq Acc Id:

XM_063267166 ⟹ XP_063123236

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	53,748,486 - 53,801,266 (-)	NCBI

RefSeq Acc Id:

XM_063267167 ⟹ XP_063123237

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	53,748,486 - 53,801,453 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001264157	(Get FASTA)	NCBI Sequence Viewer
	XP_063123236	(Get FASTA)	NCBI Sequence Viewer
	XP_063123237	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68987	(Get FASTA)	NCBI Sequence Viewer
	EDL99136	(Get FASTA)	NCBI Sequence Viewer
	EDL99137	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016285.6
	ENSRNOP00000093048.1

RefSeq Acc Id:	NP_001264157 ⟸ NM_001277228
- Peptide Label:	precursor
- UniProtKB:	B5DFA5 (UniProtKB/TrEMBL), F7FHZ5 (UniProtKB/TrEMBL), A0A9K3Y6Q7 (UniProtKB/TrEMBL), A0A8I6AI78 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFSISLLSCLFLGTVPALAQTRGERRLSPEKSEIWGPGLKAHVVLPARYFYIRAVDTSGEQFTS SPGEKVFQVQISAPDEQFTRVGVQVLDRKDGSFIVRYRMYASYRNLKIEVKHHGQHVAKSPYIL RGPVYHENCDCPLEDSAAWLREMNCPETITQIQKDLSHFPTVDPEKIAAEIPKRFGQRQSLCHY TLKDNKVYIKTHGEHVGFRIFMDAILLSLTRKVRMPEVEFFVNLGDWPLEKKKSTSNIQPIFSW CGSTESRDIVMPTYDLTDSVLETMGRVSLDMMSVQANTGPPWESKNSTAVWRGRDSRKERLELV KLSRKHPELIDAAFTNFFFFKHDESLYGPIVKHISFFDFFKHKYQINVDGTVAAYRLPYLLVGD SVVLKQDSIYYEHFYNELQPWKHYIPVKSNLSDLLEKLKWARDHDAEAKKIAKAGQEFARNNLM GDDIFCYYFKLFQGYANLQVSEPQIREGMKRVEPQSEDDLFPCTCHRKKAKDEL hide sequence

Ensembl Acc Id:

ENSRNOP00000016285 ⟸ ENSRNOT00000016285

Ensembl Acc Id:

ENSRNOP00000093048 ⟸ ENSRNOT00000109174

RefSeq Acc Id:	XP_063123237 ⟸ XM_063267167
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063123236 ⟸ XM_063267166
- Peptide Label:	isoform X1

Protein Domains

Glycosyl transferase CAP10

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DFA5-F1-model_v2	AlphaFold	B5DFA5	1-502	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696645

Promoter ID:

EPDNEW_R7169

Type:

initiation region

Name:

Kdelc1_1

Description:

KDEL motif containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	50,884,587 - 50,884,647	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304684	AgrOrtholog
BioCyc Gene	G2FUF-27654	BioCyc
Ensembl Genes	ENSRNOG00000011740	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016285.7	UniProtKB/TrEMBL
	ENSRNOT00000109174.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7126740	IMAGE-MGC_LOAD
InterPro	Filamin	UniProtKB/TrEMBL
	Filamin/ABP280_repeat-like	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_E-set	UniProtKB/TrEMBL
	LipoPS_modifying	UniProtKB/TrEMBL
	O-Glucosyltr/Glycosyltrsf_90	UniProtKB/TrEMBL
KEGG Report	rno:316370	UniProtKB/TrEMBL
MGC_CLONE	MGC:95095	IMAGE-MGC_LOAD
NCBI Gene	316370	ENTREZGENE
PANTHER	KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED	UniProtKB/TrEMBL
	PROTEIN O-GLUCOSYLTRANSFERASE 2	UniProtKB/TrEMBL
Pfam	Filamin	UniProtKB/TrEMBL
	Glyco_transf_90	UniProtKB/TrEMBL
PhenoGen	Poglut2	PhenoGen
PROSITE	FILAMIN_REPEAT	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011740	RatGTEx
SMART	CAP10	UniProtKB/TrEMBL
	IG_FLMN	UniProtKB/TrEMBL
Superfamily-SCOP	Ig_E-set	UniProtKB/TrEMBL
UniProt	A0A8I6AI78	ENTREZGENE, UniProtKB/TrEMBL
	A0A9K3Y6Q7	ENTREZGENE, UniProtKB/TrEMBL
	A6INS4_RAT	UniProtKB/TrEMBL
	B5DFA5	ENTREZGENE, UniProtKB/TrEMBL
	F7FHZ5	ENTREZGENE
UniProt Secondary	F7FHZ5	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-10	Poglut2	protein O-glucosyltransferase 2	Kdelc1	KDEL motif containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-12-16	Kdelc1	KDEL motif containing 1	Kdelc1	KDEL (Lys-Asp-Glu-Leu) containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Kdelc1	KDEL (Lys-Asp-Glu-Leu) containing 1	Kdelc1_predicted	KDEL (Lys-Asp-Glu-Leu) containing 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Kdelc1_predicted	KDEL (Lys-Asp-Glu-Leu) containing 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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