Poglut2 (protein O-glucosyltransferase 2) - Rat Genome Database

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Gene: Poglut2 (protein O-glucosyltransferase 2) Chinchilla lanigera
Analyze
Symbol: Poglut2
Name: protein O-glucosyltransferase 2
RGD ID: 9027605
Description: ENCODES a protein that exhibits UDP-glucosyltransferase activity (ortholog); UDP-xylosyltransferase activity (ortholog); INVOLVED IN protein O-linked glycosylation via serine (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum lumen (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KDEL (Lys-Asp-Glu-Leu) containing 1; KDEL motif containing 1; KDEL motif-containing protein 1; Kdelc1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554048,358,542 - 8,374,328 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554048,358,542 - 8,374,216 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Poglut2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554048,358,542 - 8,374,328 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554048,358,542 - 8,374,216 (+)NCBIChiLan1.0ChiLan1.0
POGLUT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813102,784,281 - 102,798,976 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl13102,784,281 - 102,798,976 (-)EnsemblGRCh38hg38GRCh38
GRCh3713103,436,631 - 103,451,326 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613102,234,632 - 102,249,358 (-)NCBINCBI36hg18NCBI36
Build 3413102,234,632 - 102,249,358NCBI
Celera1384,281,120 - 84,295,885 (-)NCBI
Cytogenetic Map13q33.1NCBI
HuRef1384,028,978 - 84,043,745 (-)NCBIHuRef
CHM1_113103,406,079 - 103,420,850 (-)NCBICHM1_1
T2T-CHM13v2.013102,002,466 - 102,017,152 (-)NCBI
Poglut2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39144,143,060 - 44,158,844 (-)NCBIGRCm39mm39
GRCm39 Ensembl144,145,706 - 44,157,968 (-)Ensembl
GRCm38144,106,546 - 44,118,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl144,106,546 - 44,118,808 (-)EnsemblGRCm38mm10GRCm38
MGSCv37144,163,391 - 44,175,618 (-)NCBIGRCm37mm9NCBIm37
MGSCv36144,051,092 - 44,063,319 (-)NCBImm8
Celera144,449,999 - 44,462,220 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
Poglut2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2946,256,388 - 46,268,714 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl946,256,390 - 46,268,532 (-)Ensembl
Rnor_6.0950,872,492 - 50,884,596 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl950,872,492 - 50,884,596 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0950,539,453 - 50,551,557 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4943,194,771 - 43,207,358 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1943,196,186 - 43,208,615 (-)NCBI
Celera943,960,103 - 43,972,186 (-)NCBICelera
Cytogenetic Map9q22NCBI
POGLUT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113103,081,650 - 103,096,378 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13103,081,650 - 103,096,378 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01383,944,645 - 83,959,313 (-)NCBIMhudiblu_PPA_v0panPan3
POGLUT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12252,274,616 - 52,295,981 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2252,146,466 - 52,372,304 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2252,063,032 - 52,075,652 (-)NCBI
ROS_Cfam_1.02252,731,044 - 52,743,677 (-)NCBI
ROS_Cfam_1.0 Ensembl2252,731,047 - 52,743,646 (-)Ensembl
UMICH_Zoey_3.12252,383,586 - 52,396,199 (-)NCBI
UNSW_CanFamBas_1.02252,399,690 - 52,412,325 (-)NCBI
UU_Cfam_GSD_1.02252,440,895 - 52,453,529 (-)NCBI
Poglut2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945187,666,770 - 187,678,684 (-)NCBI
SpeTri2.0NW_0049364728,273,517 - 8,285,384 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POGLUT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1171,094,223 - 71,110,396 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11171,095,116 - 71,110,490 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21178,386,611 - 78,496,441 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POGLUT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1381,338,288 - 81,360,736 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl381,331,614 - 81,360,706 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604637,875,275 - 37,897,718 (-)NCBIVero_WHO_p1.0
Poglut2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247938,698,617 - 8,711,241 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247938,698,481 - 8,711,151 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000002711   ⟹   ENSCLAP00000002656
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554048,358,542 - 8,374,328 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002712   ⟹   ENSCLAP00000002657
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554048,358,880 - 8,374,328 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002713   ⟹   ENSCLAP00000002658
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554048,358,880 - 8,374,009 (+)Ensembl
RefSeq Acc Id: XM_005374028   ⟹   XP_005374085
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554048,358,542 - 8,374,216 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374085 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374085   ⟸   XM_005374028
- Sequence:
RefSeq Acc Id: ENSCLAP00000002658   ⟸   ENSCLAT00000002713
RefSeq Acc Id: ENSCLAP00000002657   ⟸   ENSCLAT00000002712
RefSeq Acc Id: ENSCLAP00000002656   ⟸   ENSCLAT00000002711
Protein Domains
CAP10


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001918 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000002656 ENTREZGENE
  ENSCLAP00000002656.1 UniProtKB/TrEMBL
  ENSCLAP00000002657.1 UniProtKB/TrEMBL
  ENSCLAP00000002658.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002711 ENTREZGENE
  ENSCLAT00000002711.1 UniProtKB/TrEMBL
  ENSCLAT00000002712.1 UniProtKB/TrEMBL
  ENSCLAT00000002713.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CAP10 UniProtKB/TrEMBL
  Filamin/ABP280_repeat-like UniProtKB/TrEMBL
  Filamin/ABP280_rpt UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
NCBI Gene Kdelc1 ENTREZGENE
Pfam Filamin UniProtKB/TrEMBL
  Glyco_transf_90 UniProtKB/TrEMBL
PROSITE FILAMIN_REPEAT UniProtKB/TrEMBL
SMART CAP10 UniProtKB/TrEMBL
  IG_FLMN UniProtKB/TrEMBL
Superfamily-SCOP SSF81296 UniProtKB/TrEMBL
UniProt A0A8C2ULH5_CHILA UniProtKB/TrEMBL
  A0A8C2UP72_CHILA UniProtKB/TrEMBL
  A0A8C2URH9_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 Poglut2  protein O-glucosyltransferase 2  Kdelc1  KDEL motif containing 1  Symbol and/or name change 5135510 APPROVED
2016-08-16 Kdelc1  KDEL motif containing 1    KDEL (Lys-Asp-Glu-Leu) containing 1  Symbol and/or name change 5135510 APPROVED