Poglut2-ps1 (protein O-glucosyltransferase 2, pseudogene 1) - Rat Genome Database

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Gene: Poglut2-ps1 (protein O-glucosyltransferase 2, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Poglut2-ps1
Name: protein O-glucosyltransferase 2, pseudogene 1
RGD ID: 1586206
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC288331; similar to KDEL (Lys-Asp-Glu-Leu) containing 1
Related Functional Gene: Poglut2  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81121,995,255 - 21,997,249 (-)NCBIGRCr8
mRatBN7.2118,548,832 - 8,550,826 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1117,135,349 - 17,137,343 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0119,849,856 - 9,851,850 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0119,042,373 - 9,044,367 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0117,032,112 - 7,034,106 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01110,726,047 - 10,728,041 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4118,525,864 - 8,527,416 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera118,483,947 - 8,485,941 (-)NCBICelera
Cytogenetic Map11p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Poglut2-ps1
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_003751003   ⟹   XP_003751051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01110,726,217 - 10,727,769 (-)NCBI
RefSeq Acc Id: XM_003752469   ⟹   XP_003752517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera118,484,117 - 8,485,669 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22278 BioCyc
NCBI Gene 288331 ENTREZGENE
PhenoGen Poglut2-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Poglut2-ps1  protein O-glucosyltransferase 2, pseudogene 1  LOC288331  similar to KDEL (Lys-Asp-Glu-Leu) containing 1  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC288331  similar to KDEL (Lys-Asp-Glu-Leu) containing 1      Symbol and Name status set to provisional 70820 PROVISIONAL