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Gene: ST7 (suppression of tumorigenicity 7) Rattus norvegicus

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Symbol:

ST7

Name:

suppression of tumorigenicity 7

RGD ID:

1303148

Description:

Predicted to be located in membrane. Orthologous to human ST7 (suppression of tumorigenicity 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC124523; suppressor of tumorigenicity 7 protein; suppressor of tumorigenicity protein 7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ST7 (suppression of tumorigenicity 7)	RGD	RGD
Mus musculus (house mouse):	St7 (suppression of tumorigenicity 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	St7 (suppression of tumorigenicity 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ST7 (suppression of tumorigenicity 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ST7 (suppression of tumorigenicity 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	St7 (suppression of tumorigenicity 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ST7 (suppression of tumorigenicity 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ST7 (suppression of tumorigenicity 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	St7 (suppression of tumorigenicity 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ST7L (suppression of tumorigenicity 7 like)	HGNC	OrthoDB
Homo sapiens (human):	CENPN (centromere protein N)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ST7 (suppression of tumorigenicity 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	St7 (suppression of tumorigenicity 7)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	st7 (suppression of tumorigenicity 7)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F11A10.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG3634	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	st7	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	47,007,568 - 47,255,639 (+)	NCBI		GRCr8
mRatBN7.2	4	46,041,655 - 46,289,745 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	46,042,236 - 46,289,740 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	51,034,166 - 51,277,144 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	46,955,258 - 47,198,235 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	45,371,297 - 45,613,636 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	45,000,223 - 45,247,793 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	45,000,973 - 45,247,790 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	45,604,139 - 45,852,001 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	43,357,517 - 43,604,941 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	43,508,403 - 43,763,534 (+)	NCBI
Celera	4	41,313,070 - 41,556,740 (+)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cystic fibrosis (ISO)

Developmental Disabilities (ISO)

pleomorphic xanthoastrocytoma (ISO)

renal cell carcinoma (ISO)

Renal Cell Carcinoma 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

calcitriol (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

DDT (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

etoposide (ISO)

finasteride (EXP)

methimazole (EXP)

methylseleninic acid (ISO)

mitomycin C (ISO)

N,N-diethyl-m-toluamide (EXP)

N-nitrosodiethylamine (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

permethrin (EXP)

phenylmercury acetate (ISO)

picoxystrobin (ISO)

progesterone (ISO)

SB 431542 (ISO)

sulfadimethoxine (EXP)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

topotecan (EXP,ISO)

tributylstannane (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:12917688

Genomics

Comparative Map Data

ST7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	47,007,568 - 47,255,639 (+)	NCBI		GRCr8
mRatBN7.2	4	46,041,655 - 46,289,745 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	46,042,236 - 46,289,740 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	51,034,166 - 51,277,144 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	46,955,258 - 47,198,235 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	45,371,297 - 45,613,636 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	45,000,223 - 45,247,793 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	45,000,973 - 45,247,790 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	45,604,139 - 45,852,001 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	43,357,517 - 43,604,941 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	43,508,403 - 43,763,534 (+)	NCBI
Celera	4	41,313,070 - 41,556,740 (+)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

ST7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	116,953,501 - 117,230,176 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	116,953,238 - 117,230,176 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	116,593,555 - 116,870,230 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	116,380,617 - 116,657,313 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	116,187,331 - 116,457,910	NCBI
Celera	7	111,400,797 - 111,678,246 (+)	NCBI		Celera
Cytogenetic Map	7	q31.2	NCBI
HuRef	7	110,958,894 - 111,235,977 (+)	NCBI		HuRef
CHM1_1	7	116,527,062 - 116,803,192 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	118,268,670 - 118,545,512 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	115,988,833 - 116,265,505 (+)	NCBI

St7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	17,693,579 - 17,943,022 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	17,692,932 - 17,943,024 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	17,693,901 - 17,943,023 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	17,692,933 - 17,943,025 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	17,699,216 - 17,893,022 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	17,699,229 - 17,892,966 (+)	NCBI		MGSCv36	mm8
Celera	6	17,825,664 - 18,024,283 (+)	NCBI		Celera
Cytogenetic Map	6	A2	NCBI
cM Map	6	8.0	NCBI

St7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	22,665,284 - 22,937,873 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955432	22,665,745 - 22,937,163 (+)	NCBI	ChiLan1.0	ChiLan1.0

ST7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	153,783,111 - 154,057,650 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	5,793,377 - 6,067,982 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	108,922,652 - 109,197,805 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	121,680,092 - 121,892,913 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	121,680,200 - 121,896,175 (+)	Ensembl	panpan1.1		panPan2

ST7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	55,853,173 - 56,094,014 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	55,853,245 - 56,094,014 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	55,248,156 - 55,489,354 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	55,893,770 - 56,133,388 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	55,893,805 - 56,133,387 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	55,923,213 - 56,165,374 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	55,611,238 - 55,852,836 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	55,982,411 - 56,224,212 (+)	NCBI		UU_Cfam_GSD_1.0

St7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	44,570,800 - 44,790,146 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936589	1,899,687 - 2,111,047 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936589	1,899,714 - 2,119,063 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ST7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	29,027,811 - 29,285,505 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	29,028,416 - 29,285,495 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	31,040,308 - 31,067,704 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Sscrofa10.2	18	30,744,291 - 30,755,195 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ST7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	85,632,652 - 85,908,772 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	85,632,792 - 85,909,049 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	17,824,167 - 18,101,639 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

St7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624827	2,132,424 - 2,449,415 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624827	2,132,505 - 2,448,592 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ST7
710 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	317
Count of miRNA genes:	163
Interacting mature miRNAs:	186
Transcripts:	ENSRNOT00000010219, ENSRNOT00000042575, ENSRNOT00000060641
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2302371	Stl22	Serum triglyceride level QTL 22	5.15		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5218294	57114705	Rat
2303585	Bw86	Body weight QTL 86	4		body mass (VT:0001259)	body weight (CMO:0000012)	4	14678065	59678065	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	38465774	146803430	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	40433388	85433388	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	43457976	88457976	Rat
8552906	Pigfal3	Plasma insulin-like growth factor 1 level QTL 3			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	10084089	55084089	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	26775591	168368347	Rat
1331807	Rf31	Renal function QTL 31	2.988		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	4	39524264	74726312	Rat
6478766	Anxrr47	Anxiety related response QTL 47		0.09637	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	10084089	55084089	Rat
8552782	Vie1	Viral induced encephalitis QTL 1	26.4		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	34430484	82490359	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5219178	56647776	Rat
6478769	Anxrr48	Anxiety related response QTL 48		0.02514	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	10084089	55084089	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	10814170	91360527	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	45456990	146803430	Rat
2313401	Anxrr27	Anxiety related response QTL 27			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	4	17933508	62933508	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	36303261	103194984	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	44463908	148090542	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	26907285	75585128	Rat
8694374	Bw155	Body weight QTL 155	3.39	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	4	10084089	55084089	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
8552801	Bw143	Body weight QTL 143	7.3		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	34430484	82490359	Rat
61475	Aia2	Adjuvant induced arthritis QTL 2	5.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	39505275	73892441	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	40433414	85433414	Rat
61412	Pia2	Pristane induced arthritis QTL 2	3.9		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	4	21333343	62278020	Rat
6478724	Anxrr35	Anxiety related response QTL 35		0.00449	defecation behavior trait (VT:0010462)	defecation measurement (CMO:0000997)	4	10084089	55084089	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	29494195	81006281	Rat
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	5214602	78882945	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
7387227	Uae40	Urinary albumin excretion QTL 40	2.9	0.0052	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	17946999	62946999	Rat
6909122	Insul22	Insulin level QTL 22	4.63		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	4	26907285	75585128	Rat
8552809	Vie5	Viral induced encephalitis QTL 5	25.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	34430484	82490359	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5218294	65958103	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	44463908	148090542	Rat
9590304	Scort17	Serum corticosterone level QTL 17	4.96	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	10084089	55084089	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	39524264	116179656	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	32583980	114627242	Rat
11530004	Niddm71	Non-insulin dependent diabetes mellitus QTL 71		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	4	32584199	52754138	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat

Markers in Region

REN64456

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	46,248,613 - 46,248,866 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	45,206,660 - 45,206,912	NCBI	Rnor6.0
Rnor_5.0	4	45,810,868 - 45,811,120	UniSTS	Rnor5.0
RGSC_v3.4	4	43,563,811 - 43,564,063	UniSTS	RGSC3.4
Celera	4	41,515,646 - 41,515,898	UniSTS
Cytogenetic Map	4	q21	UniSTS

REN64653

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	46,200,682 - 46,200,932 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	45,158,833 - 45,159,082	NCBI	Rnor6.0
Rnor_5.0	4	45,763,102 - 45,763,351	UniSTS	Rnor5.0
RGSC_v3.4	4	43,515,882 - 43,516,131	UniSTS	RGSC3.4
Celera	4	41,467,894 - 41,468,143	UniSTS
Cytogenetic Map	4	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001004102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005503176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010065617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC087067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC095247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC123138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DP000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000077961 ⟹ ENSRNOP00000068731

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	46,092,816 - 46,289,699 (+)	Ensembl
Rnor_6.0 Ensembl	4	45,120,576 - 45,247,533 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078255 ⟹ ENSRNOP00000075727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	46,088,910 - 46,289,699 (+)	Ensembl
Rnor_6.0 Ensembl	4	45,034,123 - 45,247,782 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080880 ⟹ ENSRNOP00000070744

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	46,042,236 - 46,289,565 (+)	Ensembl
Rnor_6.0 Ensembl	4	45,001,055 - 45,247,790 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084736 ⟹ ENSRNOP00000071529

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	46,042,236 - 46,289,740 (+)	Ensembl
Rnor_6.0 Ensembl	4	45,000,973 - 45,247,788 (+)	Ensembl

RefSeq Acc Id:

NM_001004102 ⟹ NP_001004102

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,008,218 - 47,255,636 (+)	NCBI
mRatBN7.2	4	46,042,318 - 46,289,742 (+)	NCBI
Rnor_6.0	4	45,001,055 - 45,247,790 (+)	NCBI
Rnor_5.0	4	45,604,139 - 45,852,001 (+)	NCBI
RGSC_v3.4	4	43,357,517 - 43,604,941 (+)	RGD
Celera	4	41,313,070 - 41,556,740 (+)	RGD

Sequence:

show sequence

ACGAAGGCCACCGGCGGGGGCTCGCAGCGCAGGCCGCGCGGTTTCCCGCCGCATCCGGGCGCCG
GGCGAACTCGGGGGCGCCGGGCCCTGGCGGCGGCGGCTCGAGCCGTGCCTCGGGCCGGTGAATC
ATCCCGGTAGCCAGCGAGCGCCGCGGCGGTCCGCAGCAGCGCCGGAAGATGGCCGAGGCGGGCT
CGGGCTTCCTGGAGCAGCTCAAGTCCTGCATCGTGTGGTCGTGGACCTATCTGTGGACCGTGTG
GTTCTTCCTCGTGCTCTTCCTGGTCTACATCCTGAGGGTGCCCCTGAGGATCAACGACAATCTG
AGCACAGTGAGCATGTTTTTGAACACGTTAACCCCAAAGTTCTACGTGGCCCTGACAGGCACTT
CCTCACTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGAACATC
GTTCATTGAACAAGTCTCAGTGAGCCACTTGCGCCCCCTTCTGGGTGGGGTTGACAACAACTCT
TCCAATAATTCTAATTCCAGTAATGGGGACTCAGATTCCAACAGGCAAAGTGTCTCAGAATGCA
AAGTATGGCGAAATCCACTGAATTTGTTTAGGGGTGCTGAATACAATCGGTACACTTGGGTCAC
AGGACGAGAGCCTCTGACCTACTATGACATGAACCTCTCTGCCCAAGACCACCAGACCTTCTTT
ACCTGTGACTCGGACCATCTCCGTCCCGCAGATGCAATAATGCAAAAAGCGTGGAGAGAGAGGA
ACCCTCAAGCCAGGATTTCTGCAGCCCATGAAGCTTTGGAGATAAATGAGTGTGCAACTGCTTA
TATTCTCTTGGCTGAAGAGGAAGCCACAACTATTGCTGAAGCAGAAAAGCTCTTTAAGCAGGCC
CTGAAGGCTGGAGATGGTTGTTACCGGCGTTCTCAGCAGCTACAACATCATGGCTCCCAGTATG
AAGCTCAACACAGACGAGACACCAATGTCTTGGTCTATATCAAAAGAAGGCTGGCAATGTGTGC
CCGGAGACTTGGAAGGACCAGAGAAGCCGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCC
CTCTTAAGCATGTTCAATATCCATGAAAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCCTATG
CGGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCGGCAACAATATG
CTACACAGCGGCCCTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCAGAGGCTGCATCT
CGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATTCACAGAGCTGTGGAATTTA
ATCCACACGTGCCAAAATATCTGCTAGAAATGAAAAGCTTAATCCTCCCACCAGAGCACATCCT
GAAGAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGGGTG
GAAGGGGCTTTGAATCTCTTGCATTGTACGTGGGAAGGCACTTTCCGGATGATCCCATATCCTC
TGGAGAAGGGGCACCTATTTTATCCATACCCAATCTGTACAGAGACAGCTGACCGGGAGCTACT
TCCCTCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAACTTCCCTTCTTCATCCTCTTCACT
GCTGGATTGTGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTTCCGGAACTTATGG
GAGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTGAACTTTGTTATGGAGAAAGT
GGAAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTAACACGGATCTGAGGGAGCCTCCCATCC
TTCTCTTTCCACACCATCCGCCATCTCTTCTGTGCCAACTTCTCATGGACCGCAAGAAAGCATG
ACTTTGAAAAAGGGAAACCATTCTGAGATTTTAAACTGTTCATGGACTATCAGTTCCTTATTAA
AGGCTGGTTTTGTTGTACAAAATTTATTGATGTTCCGTTCTATTTTATTTTGCCTTCAAAACTG
ATCAAAAAGTAAAAAAAAGAAATAAATAAATAAACTTTTGTGTATTGCAA

hide sequence

RefSeq Acc Id:

XM_006236132 ⟹ XP_006236194

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,007,568 - 47,255,639 (+)	NCBI
mRatBN7.2	4	46,041,681 - 46,289,745 (+)	NCBI
Rnor_6.0	4	45,000,223 - 45,247,793 (+)	NCBI
Rnor_5.0	4	45,604,139 - 45,852,001 (+)	NCBI

Sequence:

show sequence

AAGTGATGAATTTTAATGTCTTGGTTAGAGTTGGGAAAGCCTGCAATTGTTTCACTTAACACTG
AATACATTAAAAGTCAAATCATTTATTGACAGAAACAGACTCTGAGGTGCCACCTAAAACCTTG
TATAAAATATACTATTTTATTCAGCCGTGGGAAAAATGCTCACAGTGTCTTTTTCATTTTTCTT
TATTTTTCATTAGGTTCAGATGAAGTATGCCAAAGTTATCCTAGGGAATGACTTAGATGTTAAA
AACAAAAACAAGACAAGACTTGTTTGAATGGTGATCACTTGGAAAATAGGAAGAAAAAGAAATA
TGTATGTTGTCAGTTTCTTTGCAAAGCCCTTCACAGTGCTTCTTGGAAAAAAACAAAACAAAAC
AAAACAAAACAAAACAAAACAAATAATAGAAGCTAGCACTAAGACAAGGAGATTTCTCTTCAGG
CCTACTGACCAGGAGTGCATCTCTCCTAGCTCTTATGGATTTTACTGATACCTTTAAGCCCCTG
TCTTGAGAGAAACAGAGCCTTAAGACTCTGAGTCCTGGAAATCTTGATTACAACTGAATTGACT
CCACCTTAAGGTAGTCCTAGCAGCGCTTTGGGCCTCAGTTTCCCTGGGCTTGTAACCCGGGTCC
TGGCAACTGTTGCAGGCTCTCACCCAGACGTTACAAAGTGTGTGGAACACGCCCGGCTCTCGGA
AGCGCACTACACGCGCGAGCTGTTACGTCAGTGGTTCCCTCGGCGGCGCCCGGGCTGTCCTCCT
AAAATACTAGTAGAAGTATAAATGGCCCGGGAGTGTGCAGGGACCGGGCCCACGTGACCGCTCC
ACGAAGGCCACCGGCGGGGGCTCGCAGCGCAGGCCGCGCGGTTTCCCGCCGCATCCGGGCGCCG
GGCGAACTCGGGGGCGCCGGGCCCTGGCGGCGGCGGCTCGAGCCGTGCCTCGGGCCGGTGAATC
ATCCCGGTAGCCAGCGAGCGCCGCGGCGGTCCGCAGCAGCGCCGGAAGATGGCCGAGGCGGGCT
CGGGCTTCCTGGAGCAGCTCAAGTCCTGCATCGTGTGGTCGTGGACCTATCTGTGGACCGTGTG
GTTCTTCCTCGTGCTCTTCCTGGTCTACATCCTGAGGGTGCCCCTGAGGATCAACGACAATCTG
AGCACAGTGAGCATGTTTTTGAACACGTTAACCCCAAAGTTCTACGTGGCCCTGACAGGCACTT
CCTCACTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGAACATC
GTTCATTGAACAAGTCTCAGTGAGCCACTTGCGCCCCCTTCTGGGTGGGGTTGACAACAACTCT
TCCAATAATTCTAATTCCAGTAATGGGGACTCAGATTCCAACAGGCAAAGTGTCTCAGAATGCA
AAGTATGGCGAAATCCACTGAATTTGTTTAGGGGTGCTGAATACAATCGGTACACTTGGGTCAC
AGGACGAGAGCCTCTGACCTACTATGACATGAACCTCTCTGCCCAAGACCACCAGACCTTCTTT
ACCTGTGACTCGGACCATCTCCGTCCCGCAGATGCAATAATGCAAAAAGCGTGGAGAGAGAGGA
ACCCTCAAGCCAGGATTTCTGCAGCCCATGAAGCTTTGGAGATAAATGAAATTAGGTCCAGAGT
TGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGTTACCAAAGTGTGCAACT
GCTTATATTCTCTTGGCTGAAGAGGAAGCCACAACTATTGCTGAAGCAGAAAAGCTCTTTAAGC
AGGCCCTGAAGGCTGGAGATGGTTGTTACCGGCGTTCTCAGCAGCTACAACATCATGGCTCCCA
GTATGAAGCTCAACACAGACGAGACACCAATGTCTTGGTCTATATCAAAAGAAGGCTGGCAATG
TGTGCCCGGAGACTTGGAAGGACCAGAGAAGCCGTGAAGATGATGAGAGATTTAATGAAGGAGT
TTCCCCTCTTAAGCATGTTCAATATCCATGAAAACCTTCTAGAAGCTCTTCTGGAACTCCAAGC
CTATGCGGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCGGCAACA
ATATGCTACACAGCGGCCCTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCAGAGGCTG
CATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATTCACAGAGCTGTGGA
ATTTAATCCACACGTGCCAAAATATCTGCTAGAAATGAAAAGCTTAATCCTCCCACCAGAGCAC
ATCCTGAAGAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGA
GGGTGGAAGGGGCTTTGAATCTCTTGCATTGTACGTGGGAAGGCACTTTCCGGATGATCCCATA
TCCTCTGGAGAAGGGGCACCTATTTTATCCATACCCAATCTGTACAGAGACAGCTGACCGGGAG
CTACTTCCCTCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAACTTCCCTTCTTCATCCTCT
TCACTGCTGGATTGTGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTTCCGGAACT
TATGGGAGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTGAACTTTGTTATGGAG
AAAGTGGAAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTAACACGGATCTGAGGGAGCCTCC
CATCCTTCTCTTTCCACACCATCCGCCATCTCTTCTGTGCCAACTTCTCATGGACCGCAAGAAA
GCATGACTTTGAAAAAGGGAAACCATTCTGAGATTTTAAACTGTTCATGGACTATCAGTTCCTT
ATTAAAGGCTGGTTTTGTTGTACAAAATTTATTGATGTTCCGTTCTATTTTATTTTGCCTTCAA
AACTGATCAAAAAGTAAAAAAAAGAAATAAATAAATAAACTTTTGTGTATTGCAACAA

hide sequence

RefSeq Acc Id:

XM_006236134 ⟹ XP_006236196

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,051,193 - 47,255,639 (+)	NCBI
mRatBN7.2	4	46,084,520 - 46,289,745 (+)	NCBI
Rnor_6.0	4	45,046,652 - 45,247,793 (+)	NCBI
Rnor_5.0	4	45,604,139 - 45,852,001 (+)	NCBI

Sequence:

show sequence

GTGAAACCTTGTTTCAAAAAACACTAAACAAACAAACAATGGTCAGTGAAGGGAAAGGTGGCTC
AGGGTGTTTGGCAGTGGGGAATGAAAGATCATATCTGAGCTTTCTCAGCAATGACCCTATGCCC
TTAGTGTAAACTGACATCCTTTTCAGGACCTGCGTAAATGGGTTGGTGGTCTTAGGTTCTAGAT
ATGCTTTAAAGGATAGTCTTTTATCACCTTTTTAAGGCTTGTTAGGTTTTGGTCTGTAGTGTTT
CAAATGGATCAATTGCACATACATACCGTGAAATGAGTGAACACAGCGACCAAACGCTTGGACA
CCAACTCCTTTCAGTTATGAAACTTCATAACACCAAGAGCTCCGGCAAGTAGTGGATGGCCTGA
AGCTTTCTGTATTTCACTTAAAATAATTAGAGAGCCCCCCCCCCCATTTTAACGTAAAATAACA
GGAAACAAATGAGACGTGGGGAGACTTTTCTAAGGATGACTTTACAAAAATAGTCAAAGGGGCA
CAGCCACAACTGAGTTACTGCTGAGTTGAGATAAGCAGCCATGTGTGCGTGTGTGCACACATTC
ATAAGGCAGGCTCCCCCAAGCATGTTGCCTAGTCGGGGAGCTGCTTGGTTTTGTGGCTGATAGA
GTTGTGCTTTGAGAACTACCCAGTTTCCTGCTTACCGCTTCACTATGGAATATGCAGTGAGCAT
GTTTTTGAACACGTTAACCCCAAAGTTCTACGTGGCCCTGACAGGCACTTCCTCACTAATATCG
GGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGAACATCGTTCATTGAACAAG
TCTCAGTGAGCCACTTGCGCCCCCTTCTGGGTGGGGTTGACAACAACTCTTCCAATAATTCTAA
TTCCAGTAATGGGGACTCAGATTCCAACAGGCAAAGTGTCTCAGAATGCAAAGTATGGCGAAAT
CCACTGAATTTGTTTAGGGGTGCTGAATACAATCGGTACACTTGGGTCACAGGACGAGAGCCTC
TGACCTACTATGACATGAACCTCTCTGCCCAAGACCACCAGACCTTCTTTACCTGTGACTCGGA
CCATCTCCGTCCCGCAGATGCAATAATGCAAAAAGCGTGGAGAGAGAGGAACCCTCAAGCCAGG
ATTTCTGCAGCCCATGAAGCTTTGGAGATAAATGAAATTAGGTCCAGAGTTGAAGTTCCCCTAA
TTGCTTCCTCTACCATCTGGGAGATAAAATTGTTACCAAAGTGTGCAACTGCTTATATTCTCTT
GGCTGAAGAGGAAGCCACAACTATTGCTGAAGCAGAAAAGCTCTTTAAGCAGGCCCTGAAGGCT
GGAGATGGTTGTTACCGGCGTTCTCAGCAGCTACAACATCATGGCTCCCAGTATGAAGCTCAAC
ACAGACGAGACACCAATGTCTTGGTCTATATCAAAAGAAGGCTGGCAATGTGTGCCCGGAGACT
TGGAAGGACCAGAGAAGCCGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCTTAAGC
ATGTTCAATATCCATGAAAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCCTATGCGGATGTTC
AGGCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCGGCAACAATATGCTACACAGC
GGCCCTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCAGAGGCTGCATCTCGGCGGGGG
CTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATTCACAGAGCTGTGGAATTTAATCCACACG
TGCCAAAATATCTGCTAGAAATGAAAAGCTTAATCCTCCCACCAGAGCACATCCTGAAGAGAGG
AGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGGGTGGAAGGGGCT
TTGAATCTCTTGCATTGTACGTGGGAAGGCACTTTCCGGATGATCCCATATCCTCTGGAGAAGG
GGCACCTATTTTATCCATACCCAATCTGTACAGAGACAGCTGACCGGGAGCTACTTCCCTCTTT
CCATGAAGTCTCAGTTTACCCAAAGAAGGAACTTCCCTTCTTCATCCTCTTCACTGCTGGATTG
TGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTTCCGGAACTTATGGGAGTCTTCG
CAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTGAACTTTGTTATGGAGAAAGTGGAAAGCAT
CCTCCCCTCCAGTTTGTGGCATCAGCTAACACGGATCTGAGGGAGCCTCCCATCCTTCTCTTTC
CACACCATCCGCCATCTCTTCTGTGCCAACTTCTCATGGACCGCAAGAAAGCATGACTTTGAAA
AAGGGAAACCATTCTGAGATTTTAAACTGTTCATGGACTATCAGTTCCTTATTAAAGGCTGGTT
TTGTTGTACAAAATTTATTGATGTTCCGTTCTATTTTATTTTGCCTTCAAAACTGATCAAAAAG
TAAAAAAAAGAAATAAATAAATAAACTTTTGTGTATTGCAACAA

hide sequence

RefSeq Acc Id:

XM_006236135 ⟹ XP_006236197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,051,193 - 47,255,639 (+)	NCBI
mRatBN7.2	4	46,084,558 - 46,289,745 (+)	NCBI
Rnor_6.0	4	45,046,652 - 45,247,793 (+)	NCBI
Rnor_5.0	4	45,604,139 - 45,852,001 (+)	NCBI

Sequence:

show sequence

GTGAAACCTTGTTTCAAAAAACACTAAACAAACAAACAATGGTCAGTGAAGGGAAAGGTGGCTC
AGGGTGTTTGGCAGTGGGGAATGAAAGATCATATCTGAGCTTTCTCAGCAATGACCCTATGCCC
TTAGTGTAAACTGACATCCTTTTCAGGACCTGCGTAAATGGGTTGGTGGTCTTAGGTTCTAGAT
ATGCTTTAAAGGATAGTCTTTTATCACCTTTTTAAGGCTTGTTAGGTTTTGGTCTGTAGTGTTT
CAAATGGATCAATTGCACATACATACCGTGAAATGAGTGAACACAGCGACCAAACGCTTGGACA
CCAACTCCTTTCAGTTATGAAACTTCATAACACCAAGAGCTCCGGCAAGTAGTGGATGGCCTGA
AGCTTTCTGTATTTCACTTAAAATAATTAGAGAGCCCCCCCCCCCATTTTAACGTAAAATAACA
GGAAACAAATGAGACGTGGGGAGACTTTTCTAAGGATGACTTTACAAAAATAGTCAAAGGGGCA
CAGCCACAACTGAGTTACTGCTGAGTTGAGATAAGCAGCCATGTGTGCGTGTGTGCACACATTC
ATAAGGCAGGCTCCCCCAAGCATGTTGCCTAGTCGGGGAGCTGCTTGGTTTTGTGGCTGATAGA
GTTGTGCTTTGAGAACTACCCAGTTTCCTGCTTACCGCTTCACTATGGAATATGCAGTGAGCAT
GTTTTTGAACACGTTAACCCCAAAGTTCTACGTGGCCCTGACAGGCACTTCCTCACTAATATCG
GGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGAACATCGTTCATTGAACAAG
TCTCAGTGAGCCACTTGCGCCCCCTTCTGGGTGGGGTTGACAACAACTCTTCCAATAATTCTAA
TTCCAGTAATGGGGACTCAGATTCCAACAGGCAAAGTGTCTCAGAATGCAAAGTATGGCGAAAT
CCACTGAATTTGTTTAGGGGTGCTGAATACAATCGGTACACTTGGGTCACAGGACGAGAGCCTC
TGACCTACTATGACATGAACCTCTCTGCCCAAGACCACCAGACCTTCTTTACCTGTGACTCGGA
CCATCTCCGTCCCGCAGATGCAATAATGCAAAAAGCGTGGAGAGAGAGGAACCCTCAAGCCAGG
ATTTCTGCAGCCCATGAAGCTTTGGAGATAAATGAGTGTGCAACTGCTTATATTCTCTTGGCTG
AAGAGGAAGCCACAACTATTGCTGAAGCAGAAAAGCTCTTTAAGCAGGCCCTGAAGGCTGGAGA
TGGTTGTTACCGGCGTTCTCAGCAGCTACAACATCATGGCTCCCAGTATGAAGCTCAACACAGA
CGAGACACCAATGTCTTGGTCTATATCAAAAGAAGGCTGGCAATGTGTGCCCGGAGACTTGGAA
GGACCAGAGAAGCCGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCTTAAGCATGTT
CAATATCCATGAAAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCCTATGCGGATGTTCAGGCA
GTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCGGCAACAATATGCTACACAGCGGCCC
TGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCAGAGGCTGCATCTCGGCGGGGGCTGAG
CACAGCAGAGATGAATGCAGTAGAAGCCATTCACAGAGCTGTGGAATTTAATCCACACGTGCCA
AAATATCTGCTAGAAATGAAAAGCTTAATCCTCCCACCAGAGCACATCCTGAAGAGAGGAGACA
GTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGGGTGGAAGGGGCTTTGAA
TCTCTTGCATTGTACGTGGGAAGGCACTTTCCGGATGATCCCATATCCTCTGGAGAAGGGGCAC
CTATTTTATCCATACCCAATCTGTACAGAGACAGCTGACCGGGAGCTACTTCCCTCTTTCCATG
AAGTCTCAGTTTACCCAAAGAAGGAACTTCCCTTCTTCATCCTCTTCACTGCTGGATTGTGTTC
CTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTTCCGGAACTTATGGGAGTCTTCGCAAAA
GCTTTCCTCAGCACTTTGTTTGCCCCCTTGAACTTTGTTATGGAGAAAGTGGAAAGCATCCTCC
CCTCCAGTTTGTGGCATCAGCTAACACGGATCTGAGGGAGCCTCCCATCCTTCTCTTTCCACAC
CATCCGCCATCTCTTCTGTGCCAACTTCTCATGGACCGCAAGAAAGCATGACTTTGAAAAAGGG
AAACCATTCTGAGATTTTAAACTGTTCATGGACTATCAGTTCCTTATTAAAGGCTGGTTTTGTT
GTACAAAATTTATTGATGTTCCGTTCTATTTTATTTTGCCTTCAAAACTGATCAAAAAGTAAAA
AAAAGAAATAAATAAATAAACTTTTGTGTATTGCAACAA

hide sequence

RefSeq Acc Id:

XM_039107264 ⟹ XP_038963192

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,007,568 - 47,255,639 (+)	NCBI
mRatBN7.2	4	46,041,678 - 46,289,745 (+)	NCBI

RefSeq Acc Id:

XM_039107265 ⟹ XP_038963193

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,026,619 - 47,255,639 (+)	NCBI
mRatBN7.2	4	46,073,269 - 46,289,745 (+)	NCBI

RefSeq Acc Id:

XM_039107266 ⟹ XP_038963194

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,007,568 - 47,236,640 (+)	NCBI
mRatBN7.2	4	46,041,662 - 46,270,744 (+)	NCBI

RefSeq Acc Id:

XM_039107267 ⟹ XP_038963195

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,007,568 - 47,198,584 (+)	NCBI
mRatBN7.2	4	46,041,655 - 46,241,464 (+)	NCBI

RefSeq Acc Id:

XM_039107269 ⟹ XP_038963197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,141,413 - 47,255,639 (+)	NCBI
mRatBN7.2	4	46,175,504 - 46,289,745 (+)	NCBI

RefSeq Acc Id:

XM_039107270 ⟹ XP_038963198

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,153,545 - 47,255,639 (+)	NCBI
mRatBN7.2	4	46,181,379 - 46,289,745 (+)	NCBI

RefSeq Acc Id:

XM_063285725 ⟹ XP_063141795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,007,568 - 47,255,639 (+)	NCBI

RefSeq Acc Id:

XM_063285726 ⟹ XP_063141796

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,051,193 - 47,255,639 (+)	NCBI

RefSeq Acc Id:

XM_063285727 ⟹ XP_063141797

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,051,193 - 47,255,639 (+)	NCBI

RefSeq Acc Id:

XM_063285728 ⟹ XP_063141798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,051,193 - 47,255,639 (+)	NCBI

RefSeq Acc Id:

XM_063285729 ⟹ XP_063141799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,012,891 - 47,255,639 (+)	NCBI

RefSeq Acc Id:

XM_063285730 ⟹ XP_063141800

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,051,193 - 47,255,639 (+)	NCBI

RefSeq Acc Id:

XM_063285731 ⟹ XP_063141801

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,033,780 - 47,255,639 (+)	NCBI

RefSeq Acc Id:

XM_063285732 ⟹ XP_063141802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,007,568 - 47,198,584 (+)	NCBI

RefSeq Acc Id:

XM_063285733 ⟹ XP_063141803

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,015,755 - 47,198,584 (+)	NCBI

RefSeq Acc Id:

XR_005503176

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,007,568 - 47,248,140 (+)	NCBI
mRatBN7.2	4	46,041,658 - 46,282,170 (+)	NCBI

RefSeq Acc Id:

XR_010065617

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,007,568 - 47,248,140 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001004102	(Get FASTA)	NCBI Sequence Viewer
	XP_006236194	(Get FASTA)	NCBI Sequence Viewer
	XP_006236196	(Get FASTA)	NCBI Sequence Viewer
	XP_006236197	(Get FASTA)	NCBI Sequence Viewer
	XP_038963192	(Get FASTA)	NCBI Sequence Viewer
	XP_038963193	(Get FASTA)	NCBI Sequence Viewer
	XP_038963194	(Get FASTA)	NCBI Sequence Viewer
	XP_038963195	(Get FASTA)	NCBI Sequence Viewer
	XP_038963197	(Get FASTA)	NCBI Sequence Viewer
	XP_038963198	(Get FASTA)	NCBI Sequence Viewer
	XP_063141795	(Get FASTA)	NCBI Sequence Viewer
	XP_063141796	(Get FASTA)	NCBI Sequence Viewer
	XP_063141797	(Get FASTA)	NCBI Sequence Viewer
	XP_063141798	(Get FASTA)	NCBI Sequence Viewer
	XP_063141799	(Get FASTA)	NCBI Sequence Viewer
	XP_063141800	(Get FASTA)	NCBI Sequence Viewer
	XP_063141801	(Get FASTA)	NCBI Sequence Viewer
	XP_063141802	(Get FASTA)	NCBI Sequence Viewer
	XP_063141803	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99820	(Get FASTA)	NCBI Sequence Viewer
	AAR16311	(Get FASTA)	NCBI Sequence Viewer
	AAR16312	(Get FASTA)	NCBI Sequence Viewer
	EDM15119	(Get FASTA)	NCBI Sequence Viewer
	EDM15120	(Get FASTA)	NCBI Sequence Viewer
	EDM15121	(Get FASTA)	NCBI Sequence Viewer
	EDM15122	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000068731.2
	ENSRNOP00000070744.2
	ENSRNOP00000071529.1
	ENSRNOP00000075727.2
GenBank Protein	Q2IBD0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001004102 ⟸ NM_001004102

- UniProtKB:

Q2IBC9 (UniProtKB/TrEMBL), A0A0G2JYP8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAEAGSGFLEQLKSCIVWSWTYLWTVWFFLVLFLVYILRVPLRINDNLSTVSMFLNTLTPKFYV
ALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDNNSSNNSNSSNGDSDSNRQ
SVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQK
AWRERNPQARISAAHEALEINECATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQH
HGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALL
ELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIH
RAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFR
MIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLTHQ
FPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTRI

hide sequence

RefSeq Acc Id:	XP_006236194 ⟸ XM_006236132
- Peptide Label:	isoform X1
- UniProtKB:	Q499P1 (UniProtKB/Swiss-Prot), Q2IBD0 (UniProtKB/Swiss-Prot), A6IE32 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEAGSGFLEQLKSCIVWSWTYLWTVWFFLVLFLVYILRVPLRINDNLSTVSMFLNTLTPKFYV ALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDNNSSNNSNSSNGDSDSNRQ SVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQK AWRERNPQARISAAHEALEINEIRSRVEVPLIASSTIWEIKLLPKCATAYILLAEEEATTIAEA EKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMR DLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDK FSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFH LAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKEL PFFILFTAGLCSFTAMLALLTHQFPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTR I hide sequence

RefSeq Acc Id:	XP_006236197 ⟸ XM_006236135
- Peptide Label:	isoform X10
- UniProtKB:	A6IE34 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEYAVSMFLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDN NSSNNSNSSNGDSDSNRQSVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQT FFTCDSDHLRPADAIMQKAWRERNPQARISAAHEALEINECATAYILLAEEEATTIAEAEKLFK QALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKE FPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEA ASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWK RVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFIL FTAGLCSFTAMLALLTHQFPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTRI hide sequence

RefSeq Acc Id:	XP_006236196 ⟸ XM_006236134
- Peptide Label:	isoform X6
- UniProtKB:	A0A0G2KBB5 (UniProtKB/TrEMBL), A6IE33 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEYAVSMFLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDN NSSNNSNSSNGDSDSNRQSVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQT FFTCDSDHLRPADAIMQKAWRERNPQARISAAHEALEINEIRSRVEVPLIASSTIWEIKLLPKC ATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRL AMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKS ATICYTAALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPP EHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETAD RELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLTHQFPELMGVFAKAFLSTLFAPLNFV MEKVESILPSSLWHQLTRI hide sequence

Ensembl Acc Id:

ENSRNOP00000070744 ⟸ ENSRNOT00000080880

Ensembl Acc Id:

ENSRNOP00000071529 ⟸ ENSRNOT00000084736

Ensembl Acc Id:

ENSRNOP00000068731 ⟸ ENSRNOT00000077961

Ensembl Acc Id:

ENSRNOP00000075727 ⟸ ENSRNOT00000078255

RefSeq Acc Id:	XP_038963195 ⟸ XM_039107267
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038963194 ⟸ XM_039107266
- Peptide Label:	isoform X11
- UniProtKB:	A6IE37 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963192 ⟸ XM_039107264
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038963193 ⟸ XM_039107265
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038963197 ⟸ XM_039107269
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038963198 ⟸ XM_039107270
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063141795 ⟸ XM_063285725
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063141802 ⟸ XM_063285732
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063141799 ⟸ XM_063285729
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063141803 ⟸ XM_063285733
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_063141801 ⟸ XM_063285731
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063141796 ⟸ XM_063285726
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JTJ1 (UniProtKB/TrEMBL), A6IE35 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141800 ⟸ XM_063285730
- Peptide Label:	isoform X8
- UniProtKB:	A6IE36 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141798 ⟸ XM_063285728
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JTJ1 (UniProtKB/TrEMBL), A6IE35 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141797 ⟸ XM_063285727
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JTJ1 (UniProtKB/TrEMBL), A6IE35 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q2IBD0-F1-model_v2	AlphaFold	Q2IBD0	1-577	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692905

Promoter ID:

EPDNEW_R3418

Type:

initiation region

Name:

ST7_1

Description:

suppression of tumorigenicity 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	45,001,002 - 45,001,062	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303148	AgrOrtholog
BioCyc Gene	G2FUF-45545	BioCyc
Ensembl Genes	ENSRNOG00000056243	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000077961.2	UniProtKB/TrEMBL
	ENSRNOT00000078255.2	UniProtKB/TrEMBL
	ENSRNOT00000080880.2	UniProtKB/TrEMBL
	ENSRNOT00000084736.2	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7109570	IMAGE-MGC_LOAD
	IMAGE:7930680	IMAGE-MGC_LOAD
InterPro	ST7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:296911	UniProtKB/TrEMBL
MGC_CLONE	MGC:124523	IMAGE-MGC_LOAD
	MGC:93787	IMAGE-MGC_LOAD
NCBI Gene	296911	ENTREZGENE
PANTHER	PTHR12745	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SUPPRESSOR OF TUMORIGENICITY 7 PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	ST7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	ST7	PhenoGen
RatGTEx	ENSRNOG00000056243	RatGTEx
UniProt	A0A0G2JTJ1	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2JYP8	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2KBB5	ENTREZGENE, UniProtKB/TrEMBL
	A6IE32	ENTREZGENE, UniProtKB/TrEMBL
	A6IE33	ENTREZGENE, UniProtKB/TrEMBL
	A6IE34	ENTREZGENE, UniProtKB/TrEMBL
	A6IE35	ENTREZGENE, UniProtKB/TrEMBL
	A6IE36	ENTREZGENE, UniProtKB/TrEMBL
	A6IE37	ENTREZGENE, UniProtKB/TrEMBL
	Q2IBC9	ENTREZGENE, UniProtKB/TrEMBL
	Q2IBD0	ENTREZGENE
	Q499P1	ENTREZGENE
	ST7_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q499P1	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	ST7	suppression of tumorigenicity 7			Symbol and Name status set to approved	1299863	APPROVED
2005-09-30	ST7				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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