St7 (suppression of tumorigenicity 7) - Rat Genome Database

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Gene: St7 (suppression of tumorigenicity 7) Ictidomys tridecemlineatus
Analyze
Symbol: St7
Name: suppression of tumorigenicity 7
RGD ID: 12589421
Description: ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: suppression of tumorigenicity 7, transcript variant X1; suppression of tumorigenicity 7, transcript variant X2; suppression of tumorigenicity 7, transcript variant X3; suppression of tumorigenicity 7, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511844,570,800 - 44,790,146 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365891,899,687 - 2,111,047 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365891,899,714 - 2,119,063 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
St7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511844,570,800 - 44,790,146 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365891,899,687 - 2,111,047 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365891,899,714 - 2,119,063 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387116,953,501 - 117,230,176 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7116,953,238 - 117,230,176 (+)EnsemblGRCh38hg38GRCh38
GRCh377116,593,555 - 116,870,230 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367116,380,617 - 116,657,313 (+)NCBINCBI36Build 36hg18NCBI36
Build 347116,187,331 - 116,457,910NCBI
Celera7111,400,797 - 111,678,246 (+)NCBICelera
Cytogenetic Map7q31.2NCBI
HuRef7110,958,894 - 111,235,977 (+)NCBIHuRef
CHM1_17116,527,062 - 116,803,192 (+)NCBICHM1_1
T2T-CHM13v2.07118,268,670 - 118,545,512 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27115,988,833 - 116,265,505 (+)NCBI
St7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39617,693,579 - 17,943,022 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl617,692,932 - 17,943,024 (+)EnsemblGRCm39 Ensembl
GRCm38617,693,901 - 17,943,023 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl617,692,933 - 17,943,025 (+)EnsemblGRCm38mm10GRCm38
MGSCv37617,699,216 - 17,893,022 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36617,699,229 - 17,892,966 (+)NCBIMGSCv36mm8
Celera617,825,664 - 18,024,283 (+)NCBICelera
Cytogenetic Map6A2NCBI
cM Map68.0NCBI
ST7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8447,007,568 - 47,255,639 (+)NCBIGRCr8
mRatBN7.2446,041,655 - 46,289,745 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl446,042,236 - 46,289,740 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx451,034,166 - 51,277,144 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0446,955,258 - 47,198,235 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0445,371,297 - 45,613,636 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0445,000,223 - 45,247,793 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl445,000,973 - 45,247,790 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0445,604,139 - 45,852,001 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4443,357,517 - 43,604,941 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1443,508,403 - 43,763,534 (+)NCBI
Celera441,313,070 - 41,556,740 (+)NCBICelera
Cytogenetic Map4q22NCBI
St7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543222,665,284 - 22,937,873 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543222,665,745 - 22,937,163 (+)NCBIChiLan1.0ChiLan1.0
ST7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26153,783,111 - 154,057,650 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan175,793,377 - 6,067,982 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07108,922,652 - 109,197,805 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17121,680,092 - 121,892,913 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7121,680,200 - 121,896,175 (+)Ensemblpanpan1.1panPan2
ST7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11455,853,173 - 56,094,014 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1455,853,245 - 56,094,014 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1455,248,156 - 55,489,354 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01455,893,770 - 56,133,388 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1455,893,805 - 56,133,387 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11455,923,213 - 56,165,374 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01455,611,238 - 55,852,836 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01455,982,411 - 56,224,212 (+)NCBIUU_Cfam_GSD_1.0
ST7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1829,027,811 - 29,285,505 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11829,028,416 - 29,285,495 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21831,040,308 - 31,067,704 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21830,744,291 - 30,755,195 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ST7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12185,632,652 - 85,908,772 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2185,632,792 - 85,909,049 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604217,824,167 - 18,101,639 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248272,132,424 - 2,449,415 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248272,132,505 - 2,448,592 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000005662   ⟹   ENSSTOP00000005067
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365891,899,974 - 2,111,047 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000032055   ⟹   ENSSTOP00000026705
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365891,899,974 - 2,104,974 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000035968   ⟹   ENSSTOP00000024072
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365891,899,974 - 2,024,159 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000036973   ⟹   ENSSTOP00000032118
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365891,899,687 - 2,105,420 (-)Ensembl
RefSeq Acc Id: XM_021731024   ⟹   XP_021586699
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511844,570,800 - 44,790,146 (+)NCBI
SpeTri2.0NW_0049365891,899,714 - 2,119,063 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021731025   ⟹   XP_021586700
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511844,584,491 - 44,790,146 (+)NCBI
SpeTri2.0NW_0049365891,899,714 - 2,105,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021731027   ⟹   XP_021586702
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511844,584,492 - 44,790,146 (+)NCBI
SpeTri2.0NW_0049365891,899,720 - 2,105,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040291588   ⟹   XP_040147522
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511844,585,173 - 44,790,146 (+)NCBI
RefSeq Acc Id: XM_040291589   ⟹   XP_040147523
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511844,585,173 - 44,790,146 (+)NCBI
RefSeq Acc Id: XM_040291590   ⟹   XP_040147524
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511844,611,122 - 44,790,146 (+)NCBI
RefSeq Acc Id: XM_040291591   ⟹   XP_040147525
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511844,585,144 - 44,769,529 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021586699   ⟸   XM_021731024
- Peptide Label: isoform X2
- UniProtKB: A0A287CS21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021586700   ⟸   XM_021731025
- Peptide Label: isoform X3
- UniProtKB: A0A287CZE1 (UniProtKB/TrEMBL),   A0A287CS21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021586702   ⟸   XM_021731027
- Peptide Label: isoform X6
- UniProtKB: A0A287DEZ4 (UniProtKB/TrEMBL),   A0A287CS21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040147525   ⟸   XM_040291591
- Peptide Label: isoform X7
RefSeq Acc Id: XP_040147522   ⟸   XM_040291588
- Peptide Label: isoform X1
- UniProtKB: A0A287CS21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040147523   ⟸   XM_040291589
- Peptide Label: isoform X4
- UniProtKB: A0A287CS21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040147524   ⟸   XM_040291590
- Peptide Label: isoform X5
- UniProtKB: A0A287CS21 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000026705   ⟸   ENSSTOT00000032055
RefSeq Acc Id: ENSSTOP00000032118   ⟸   ENSSTOT00000036973
RefSeq Acc Id: ENSSTOP00000005067   ⟸   ENSSTOT00000005662
RefSeq Acc Id: ENSSTOP00000024072   ⟸   ENSSTOT00000035968


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005659 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005662.3 UniProtKB/TrEMBL
  ENSSTOT00000032055.1 UniProtKB/TrEMBL
  ENSSTOT00000035968.1 UniProtKB/TrEMBL
  ENSSTOT00000036973.1 UniProtKB/TrEMBL
InterPro ST7 UniProtKB/TrEMBL
NCBI Gene St7 ENTREZGENE
PANTHER PTHR12745 UniProtKB/TrEMBL
  SUPPRESSOR OF TUMORIGENICITY 7 PROTEIN UniProtKB/TrEMBL
Pfam ST7 UniProtKB/TrEMBL
UniProt A0A287CS21 ENTREZGENE, UniProtKB/TrEMBL
  A0A287CZE1 ENTREZGENE, UniProtKB/TrEMBL
  A0A287DEZ4 ENTREZGENE, UniProtKB/TrEMBL
  I3M6G7_ICTTR UniProtKB/TrEMBL