GLI3 (GLI family zinc finger 3) - Rat Genome Database

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Gene: GLI3 (GLI family zinc finger 3) Canis lupus familiaris
Analyze
Symbol: GLI3
Name: GLI family zinc finger 3
RGD ID: 12174088
Description: ENCODES a protein that exhibits beta-catenin binding (inferred); chromatin binding (inferred); DNA binding (inferred); INVOLVED IN anatomical structure formation involved in morphogenesis (ortholog); anterior semicircular canal development (ortholog); anterior/posterior pattern specification (ortholog); PARTICIPATES IN altered Hedgehog signaling pathway; Hedgehog signaling pathway; pancreatic cancer pathway; ASSOCIATED WITH Abnormal Reflexes (ortholog); anodontia (ortholog); Anorectal Malformations (ortholog); FOUND IN axoneme (ortholog); cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome); transcriptional activator GLI3; zinc finger protein GLI3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1187,800,817 - 8,071,531 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl187,801,394 - 8,068,132 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha187,651,291 - 7,921,706 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0187,847,548 - 8,118,213 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl187,846,935 - 8,116,066 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1187,829,563 - 8,099,968 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0187,798,494 - 8,068,961 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0187,912,805 - 8,183,294 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anatomical structure formation involved in morphogenesis  (ISO)
anatomical structure morphogenesis  (IEA)
anterior semicircular canal development  (ISO)
anterior/posterior pattern specification  (ISO)
artery development  (ISO)
axon guidance  (ISO)
brain development  (ISO)
branching involved in ureteric bud morphogenesis  (ISO)
branching morphogenesis of an epithelial tube  (ISO)
camera-type eye development  (ISO)
camera-type eye morphogenesis  (ISO)
cell differentiation involved in kidney development  (ISO)
central nervous system development  (ISO)
cerebral cortex radial glia-guided migration  (ISO)
developmental growth  (ISO)
dorsal/ventral pattern formation  (ISO)
embryonic digestive tract development  (ISO)
embryonic digestive tract morphogenesis  (ISO)
embryonic digit morphogenesis  (ISO)
embryonic limb morphogenesis  (ISO)
embryonic morphogenesis  (ISO)
embryonic neurocranium morphogenesis  (ISO)
embryonic skeletal system morphogenesis  (ISO)
forebrain development  (ISO)
forebrain dorsal/ventral pattern formation  (ISO)
forebrain radial glial cell differentiation  (ISO)
frontal suture morphogenesis  (ISO)
gene expression  (ISO)
heart development  (ISO)
hindgut morphogenesis  (ISO)
hippocampus development  (ISO)
in utero embryonic development  (ISO)
inner ear development  (ISO)
kidney development  (ISO)
lambdoid suture morphogenesis  (ISO)
larynx morphogenesis  (ISO)
lateral ganglionic eminence cell proliferation  (ISO)
lateral semicircular canal development  (ISO)
layer formation in cerebral cortex  (ISO)
limb development  (IEA)
limb morphogenesis  (IEA,ISO)
liver regeneration  (ISO)
lung development  (ISO)
mammary gland development  (ISO)
mammary gland specification  (ISO)
melanocyte differentiation  (ISO)
metanephros development  (ISO)
negative regulation of alpha-beta T cell differentiation  (IEA)
negative regulation of apoptotic process  (ISO)
negative regulation of canonical Wnt signaling pathway  (IEA)
negative regulation of cell differentiation  (ISO)
negative regulation of cell population proliferation  (ISO)
negative regulation of DNA-templated transcription  (IEA,ISO)
negative regulation of neuron differentiation  (ISO)
negative regulation of smoothened signaling pathway  (IEA)
negative regulation of transcription by RNA polymerase II  (IEA,ISO)
negative thymic T cell selection  (IEA)
neural tube development  (ISO)
neuron fate commitment  (ISO)
odontogenesis of dentin-containing tooth  (ISO)
oligodendrocyte differentiation  (ISO)
optic nerve morphogenesis  (ISO)
pallium development  (ISO)
pattern specification process  (ISO)
positive regulation of alpha-beta T cell differentiation  (IEA)
positive regulation of chondrocyte differentiation  (ISO)
positive regulation of DNA-templated transcription  (ISO)
positive regulation of neuroblast proliferation  (ISO)
positive regulation of osteoblast differentiation  (ISO)
positive regulation of protein import into nucleus  (ISO)
positive regulation of transcription by RNA polymerase II  (IEA)
prostate gland development  (ISO)
protein processing  (ISO)
proximal/distal pattern formation  (ISO)
regulation of apoptotic process  (ISO)
regulation of bone development  (ISO)
regulation of cell differentiation  (ISO)
regulation of cell population proliferation  (ISO)
regulation of DNA-templated transcription  (IEA,ISO)
regulation of gene expression  (IEA,ISO)
regulation of smoothened signaling pathway  (ISO)
regulation of transcription by RNA polymerase II  (IBA,IEA)
response to estrogen  (ISO)
roof of mouth development  (ISO)
sagittal suture morphogenesis  (ISO)
smoothened signaling pathway  (IBA,IEA,ISO)
spinal cord dorsal/ventral patterning  (ISO)
spinal cord motor neuron differentiation  (ISO)
subpallium development  (ISO)
T cell differentiation in thymus  (IEA,ISO)
telencephalon development  (ISO)
thymocyte apoptotic process  (IEA)
tongue development  (ISO)
tube development  (ISO)
vocalization behavior  (ISO)

Cellular Component
axoneme  (IEA,ISO)
cilium  (IEA,ISO)
cytoplasm  (IEA)
cytosol  (IEA)
GLI-SUFU complex  (IEA)
nuclear speck  (IEA)
nucleus  (IBA,IEA)
transcription repressor complex  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GLI3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1187,800,817 - 8,071,531 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl187,801,394 - 8,068,132 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha187,651,291 - 7,921,706 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0187,847,548 - 8,118,213 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl187,846,935 - 8,116,066 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1187,829,563 - 8,099,968 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0187,798,494 - 8,068,961 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0187,912,805 - 8,183,294 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
GLI3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38741,960,949 - 42,264,268 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl741,960,949 - 42,264,265 (-)Ensemblhg38GRCh38
GRCh37742,000,547 - 42,276,808 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36741,967,072 - 42,243,137 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34741,776,919 - 42,036,135NCBI
Celera741,991,319 - 42,267,350 (-)NCBICelera
Cytogenetic Map7p14.1NCBI
HuRef741,885,427 - 42,162,362 (-)NCBIHuRef
CHM1_1742,003,855 - 42,280,223 (-)NCBICHM1_1
T2T-CHM13v2.0742,119,298 - 42,422,619 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2742,040,400 - 42,316,460 (-)NCBI
Gli3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391315,638,308 - 15,904,611 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1315,637,820 - 15,904,611 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381315,463,723 - 15,730,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1315,463,235 - 15,730,026 (+)Ensemblmm10GRCm38
MGSCv371315,555,556 - 15,821,859 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361315,254,867 - 15,517,860 (+)NCBIMGSCv36mm8
Celera1315,745,941 - 16,017,370 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map135.43NCBI
Gli3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81754,134,064 - 54,405,198 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1754,134,064 - 54,405,198 (-)EnsemblGRCr8
mRatBN7.21749,438,567 - 49,709,712 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1749,438,567 - 49,709,712 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1752,630,120 - 52,901,404 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01756,633,008 - 56,904,289 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01750,730,889 - 51,002,171 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01752,294,942 - 52,569,036 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1752,294,942 - 52,569,036 (-)Ensemblrn6Rnor6.0
Rnor_5.01750,360,049 - 50,629,477 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41757,594,102 - 57,867,710 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1745,497,321 - 45,768,089 (-)NCBICelera
RGSC_v3.11757,781,069 - 57,856,545 (-)NCBI
Cytogenetic Map17q12.1NCBI
Gli3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554601,528,412 - 1,805,918 (+)Ensembl
ChiLan1.0NW_0049554601,528,457 - 1,805,584 (+)NCBIChiLan1.0ChiLan1.0
GLI3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2646,203,233 - 46,479,589 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1794,528,190 - 94,804,051 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0742,004,965 - 42,280,772 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1742,056,566 - 42,322,865 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl742,056,565 - 42,322,865 (+)EnsemblpanPan2panpan1.1
Gli3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511897,915,181 - 98,191,969 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647817,126,911 - 17,403,011 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647817,129,922 - 17,403,630 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLI3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1852,404,072 - 52,697,900 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11852,403,463 - 52,697,906 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21857,616,734 - 57,801,327 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLI3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12116,386,700 - 16,665,648 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2116,549,789 - 16,662,238 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660625,800,697 - 6,080,257 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gli3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474018,975,596 - 19,235,900 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474018,961,395 - 19,238,760 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Gli3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11433,949,662 - 34,039,568 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in GLI3
3433 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000005687   ⟹   ENSCAFP00000005264
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl187,867,912 - 8,068,132 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000049220   ⟹   ENSCAFP00000039478
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl187,801,394 - 8,068,132 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000083413   ⟹   ENSCAFP00000053471
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl187,879,793 - 8,068,132 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845032272   ⟹   ENSCAFP00845025228
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl187,846,935 - 8,116,066 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845032422   ⟹   ENSCAFP00845025349
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl187,880,217 - 8,116,066 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845032539   ⟹   ENSCAFP00845025446
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl187,914,448 - 8,116,066 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845032662   ⟹   ENSCAFP00845025547
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl187,937,466 - 8,116,066 (+)Ensembl
RefSeq Acc Id: XM_038423703   ⟹   XP_038279631
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0187,847,548 - 8,118,213 (+)NCBI
RefSeq Acc Id: XM_038454031   ⟹   XP_038309959
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha187,651,291 - 7,921,706 (+)NCBI
RefSeq Acc Id: XM_038500069   ⟹   XP_038355997
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1187,829,563 - 8,099,968 (+)NCBI
RefSeq Acc Id: XM_038562653   ⟹   XP_038418581
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0187,912,805 - 8,183,294 (+)NCBI
RefSeq Acc Id: XM_038626733   ⟹   XP_038482661
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0187,798,494 - 8,068,961 (+)NCBI
Ensembl Acc Id: ENSCAFP00000005264   ⟸   ENSCAFT00000005687
Ensembl Acc Id: ENSCAFP00000039478   ⟸   ENSCAFT00000049220
Ensembl Acc Id: ENSCAFP00000053471   ⟸   ENSCAFT00000083413
RefSeq Acc Id: XP_038355997   ⟸   XM_038500069
RefSeq Acc Id: XP_038482661   ⟸   XM_038626733
RefSeq Acc Id: XP_038279631   ⟸   XM_038423703
- UniProtKB: A0A8C0S0Q7 (UniProtKB/TrEMBL),   A0A8I3P2B2 (UniProtKB/TrEMBL),   A0A8C0LC73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038309959   ⟸   XM_038454031
- UniProtKB: A0A8P0NQW6 (UniProtKB/TrEMBL),   A0A8C0LC73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038418581   ⟸   XM_038562653
- UniProtKB: A0A8C0LC73 (UniProtKB/TrEMBL),   A0A8C0S0Q7 (UniProtKB/TrEMBL),   A0A8I3P2B2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845025446   ⟸   ENSCAFT00845032539
Ensembl Acc Id: ENSCAFP00845025349   ⟸   ENSCAFT00845032422
Ensembl Acc Id: ENSCAFP00845025547   ⟸   ENSCAFT00845032662
Ensembl Acc Id: ENSCAFP00845025228   ⟸   ENSCAFT00845032272
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003535 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030005192 UniProtKB/TrEMBL
  ENSCAFG00040008546 UniProtKB/TrEMBL
  ENSCAFG00845018240 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000005687.5 UniProtKB/TrEMBL
  ENSCAFT00000049220.4 UniProtKB/TrEMBL
  ENSCAFT00030009538.1 UniProtKB/TrEMBL
  ENSCAFT00030009597.1 UniProtKB/TrEMBL
  ENSCAFT00030009652.1 UniProtKB/TrEMBL
  ENSCAFT00040015955.1 UniProtKB/TrEMBL
  ENSCAFT00040016018.1 UniProtKB/TrEMBL
  ENSCAFT00040016092.1 UniProtKB/TrEMBL
  ENSCAFT00040016160.1 UniProtKB/TrEMBL
  ENSCAFT00845032272 ENTREZGENE
  ENSCAFT00845032272.1 UniProtKB/TrEMBL
  ENSCAFT00845032422.1 UniProtKB/TrEMBL
  ENSCAFT00845032539.1 UniProtKB/TrEMBL
  ENSCAFT00845032662.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro GLI-like UniProtKB/TrEMBL
  Znf-C2H2_ZIC1-5/GLI1-3-like UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene GLI3 ENTREZGENE
PANTHER PTHR45718 UniProtKB/TrEMBL
  PTHR45718:SF5 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_15 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8C0LC73 ENTREZGENE
  A0A8C0QGM8_CANLF UniProtKB/TrEMBL
  A0A8C0QNC1_CANLF UniProtKB/TrEMBL
  A0A8C0S0Q7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S0S5_CANLF UniProtKB/TrEMBL
  A0A8I3P013_CANLF UniProtKB/TrEMBL
  A0A8I3P099_CANLF UniProtKB/TrEMBL
  A0A8I3P2B2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PDN7_CANLF UniProtKB/TrEMBL
  A0A8P0NQW6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0S958_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:41258 ENTREZGENE