PPP1R3D (protein phosphatase 1 regulatory subunit 3D) - Rat Genome Database

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Gene: PPP1R3D (protein phosphatase 1 regulatory subunit 3D) Canis lupus familiaris
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Symbol: PPP1R3D
Name: protein phosphatase 1 regulatory subunit 3D
RGD ID: 12077073
Description: ENCODES a protein that exhibits enzyme binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN regulation of glycogen biosynthetic process (ortholog); regulation of glycogen catabolic process (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; glycogen biosynthetic pathway; glycogen degradation pathway; FOUND IN glycogen granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein phosphatase 1, regulatory (inhibitor) subunit 3D
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12444,550,028 - 44,551,556 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2444,550,320 - 44,551,219 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2443,794,436 - 43,795,617 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02445,416,651 - 45,417,832 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2445,416,933 - 45,417,832 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12444,518,184 - 44,519,364 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02444,637,780 - 44,638,960 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02445,297,767 - 45,298,948 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PPP1R3D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12444,550,028 - 44,551,556 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2444,550,320 - 44,551,219 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2443,794,436 - 43,795,617 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02445,416,651 - 45,417,832 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2445,416,933 - 45,417,832 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12444,518,184 - 44,519,364 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02444,637,780 - 44,638,960 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02445,297,767 - 45,298,948 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
PPP1R3D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382059,936,663 - 59,940,305 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2059,936,663 - 59,940,305 (-)Ensemblhg38GRCh38
GRCh372058,511,718 - 58,515,360 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362057,945,282 - 57,948,747 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342057,945,282 - 57,948,747NCBI
Celera2055,252,565 - 55,256,030 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2055,299,100 - 55,302,565 (-)NCBIHuRef
CHM1_12058,412,949 - 58,416,414 (-)NCBICHM1_1
T2T-CHM13v2.02061,720,935 - 61,724,577 (-)NCBIT2T-CHM13v2.0
Ppp1r3d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392178,052,999 - 178,056,256 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2178,052,999 - 178,056,265 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382178,411,206 - 178,414,463 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2178,411,206 - 178,414,472 (-)Ensemblmm10GRCm38
MGSCv372178,145,911 - 178,149,177 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362178,340,614 - 178,343,929 (-)NCBIMGSCv36mm8
Celera2182,497,614 - 182,500,880 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map299.91NCBI
Ppp1r3d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83185,880,087 - 185,883,158 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3185,876,709 - 185,883,703 (-)EnsemblGRCr8
mRatBN7.23165,502,384 - 165,505,455 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3165,502,384 - 165,505,455 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3169,876,489 - 169,879,560 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03178,835,577 - 178,838,648 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03175,501,947 - 175,505,018 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd3184,488,899 - 184,491,970 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive3191,349,823 - 191,352,894 (-)NCBILyon_Normotensive
Lyon_Hypertensive3183,316,748 - 183,319,819 (-)NCBILyon_Hypertensive
F344_StmMcwi3164,260,397 - 164,263,468 (-)NCBIF344_StmMcwi
Rnor_6.03173,950,613 - 173,953,684 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3173,950,613 - 173,953,684 (-)Ensemblrn6Rnor6.0
Rnor_5.03183,137,515 - 183,140,586 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43167,505,678 - 167,508,749 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3167,056,456 - 167,059,527 (+)NCBICelera
Cytogenetic Map3q43NCBI
Ppp1r3d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555283,804,557 - 3,807,309 (+)NCBIChiLan1.0ChiLan1.0
PPP1R3D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22165,705,083 - 65,708,325 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12065,698,203 - 65,701,298 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02056,292,457 - 56,295,977 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12057,644,184 - 57,647,585 (-)NCBIPanPan1.1PanPan1.1panPan2
Ppp1r3d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640192,897,627 - 192,900,141 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365148,352,513 - 8,353,409 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365148,350,275 - 8,353,782 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R3D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1759,964,585 - 59,967,113 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11759,963,560 - 59,967,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21767,406,676 - 67,409,825 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPP1R3D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.124,207,963 - 4,211,630 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl24,208,351 - 4,209,250 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605052,250,088 - 52,253,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r3d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474126,207,096 - 26,207,827 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474126,205,076 - 26,208,158 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ppp1r3d
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15155,479,194 - 155,482,291 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in PPP1R3D
11 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000019574   ⟹   ENSCAFP00000018157
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2444,550,320 - 44,551,219 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845027703   ⟹   ENSCAFP00845021802
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2445,416,933 - 45,417,832 (-)Ensembl
RefSeq Acc Id: XM_005635248   ⟹   XP_005635305
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12444,550,028 - 44,551,556 (-)NCBI
Dog10K_Boxer_Tasha2443,794,436 - 43,795,617 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038434258   ⟹   XP_038290186
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02445,416,651 - 45,417,832 (-)NCBI
RefSeq Acc Id: XM_038509417   ⟹   XP_038365345
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12444,518,184 - 44,519,364 (-)NCBI
RefSeq Acc Id: XM_038572773   ⟹   XP_038428701
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02445,297,767 - 45,298,948 (-)NCBI
RefSeq Acc Id: XM_038637049   ⟹   XP_038492977
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02444,637,780 - 44,638,960 (-)NCBI
RefSeq Acc Id: XP_005635305   ⟸   XM_005635248
- UniProtKB: A0A8I3NY08 (UniProtKB/TrEMBL),   A0A8P0NE88 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000018157   ⟸   ENSCAFT00000019574
RefSeq Acc Id: XP_038365345   ⟸   XM_038509417
RefSeq Acc Id: XP_038492977   ⟸   XM_038637049
RefSeq Acc Id: XP_038290186   ⟸   XM_038434258
- UniProtKB: A0A8I3NY08 (UniProtKB/TrEMBL),   A0A8P0NE88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428701   ⟸   XM_038572773
- UniProtKB: A0A8I3NY08 (UniProtKB/TrEMBL),   A0A8P0NE88 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845021802   ⟸   ENSCAFT00845027703
Protein Domains
CBM21


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012333 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845015533 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000019574.4 UniProtKB/TrEMBL
  ENSCAFT00845027703 ENTREZGENE
  ENSCAFT00845027703.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.2440 UniProtKB/TrEMBL
InterPro CBM21_dom UniProtKB/TrEMBL
  CBM21_dom_sf UniProtKB/TrEMBL
  Pase-1_reg-su_3B/C/D_met UniProtKB/TrEMBL
  PP1_regulatory_subunit_3 UniProtKB/TrEMBL
KEGG Report cfa:485953 UniProtKB/TrEMBL
NCBI Gene PPP1R3D ENTREZGENE
PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT UniProtKB/TrEMBL
  PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 3D UniProtKB/TrEMBL
Pfam CBM_21 UniProtKB/TrEMBL
PIRSF PP1_GT_animal UniProtKB/TrEMBL
PROSITE CBM21 UniProtKB/TrEMBL
UniProt A0A8I3NY08 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NE88 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:44899 ENTREZGENE