PPP1R3D (protein phosphatase 1 regulatory subunit 3D) - Rat Genome Database

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Gene: PPP1R3D (protein phosphatase 1 regulatory subunit 3D) Sus scrofa
Analyze
Symbol: PPP1R3D
Name: protein phosphatase 1 regulatory subunit 3D
RGD ID: 13925522
Description: ENCODES a protein that exhibits enzyme binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN regulation of glycogen biosynthetic process (ortholog); regulation of glycogen catabolic process (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; glycogen biosynthetic pathway; glycogen degradation pathway; FOUND IN glycogen granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1759,964,585 - 59,967,113 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11759,963,560 - 59,967,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21767,406,676 - 67,409,825 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PPP1R3D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1759,964,585 - 59,967,113 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11759,963,560 - 59,967,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21767,406,676 - 67,409,825 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPP1R3D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382059,936,663 - 59,940,305 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2059,936,663 - 59,940,305 (-)EnsemblGRCh38hg38GRCh38
GRCh372058,511,718 - 58,515,360 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362057,945,282 - 57,948,747 (-)NCBINCBI36Build 36hg18NCBI36
Build 342057,945,282 - 57,948,747NCBI
Celera2055,252,565 - 55,256,030 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2055,299,100 - 55,302,565 (-)NCBIHuRef
CHM1_12058,412,949 - 58,416,414 (-)NCBICHM1_1
T2T-CHM13v2.02061,720,935 - 61,724,577 (-)NCBIT2T-CHM13v2.0
Ppp1r3d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392178,052,999 - 178,056,256 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2178,052,999 - 178,056,265 (-)EnsemblGRCm39 Ensembl
GRCm382178,411,206 - 178,414,463 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2178,411,206 - 178,414,472 (-)EnsemblGRCm38mm10GRCm38
MGSCv372178,145,911 - 178,149,177 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362178,340,614 - 178,343,929 (-)NCBIMGSCv36mm8
Celera2182,497,614 - 182,500,880 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map299.91NCBI
Ppp1r3d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83185,880,087 - 185,883,158 (-)NCBIGRCr8
mRatBN7.23165,502,384 - 165,505,455 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3165,502,384 - 165,505,455 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3169,876,489 - 169,879,560 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03178,835,577 - 178,838,648 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03175,501,947 - 175,505,018 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03173,950,613 - 173,953,684 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3173,950,613 - 173,953,684 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03183,137,515 - 183,140,586 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43167,505,678 - 167,508,749 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3167,056,456 - 167,059,527 (+)NCBICelera
Cytogenetic Map3q43NCBI
Ppp1r3d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555283,804,557 - 3,807,309 (+)NCBIChiLan1.0ChiLan1.0
PPP1R3D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22165,705,083 - 65,708,325 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12065,698,203 - 65,701,298 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02056,292,457 - 56,295,977 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12057,644,184 - 57,647,585 (-)NCBIpanpan1.1PanPan1.1panPan2
PPP1R3D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12444,550,028 - 44,551,556 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2444,550,320 - 44,551,219 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2443,794,436 - 43,795,617 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02445,416,651 - 45,417,832 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2445,416,933 - 45,417,832 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12444,518,184 - 44,519,364 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02444,637,780 - 44,638,960 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02445,297,767 - 45,298,948 (-)NCBIUU_Cfam_GSD_1.0
Ppp1r3d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640192,897,627 - 192,900,141 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365148,352,513 - 8,353,409 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365148,350,275 - 8,353,782 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R3D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.124,207,963 - 4,211,630 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl24,208,351 - 4,209,250 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605052,250,088 - 52,253,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r3d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474126,207,096 - 26,207,827 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474126,205,076 - 26,208,158 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PPP1R3D
38 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 3 10 3 2 5 10 11 10 3 5 3

Sequence


Ensembl Acc Id: ENSSSCT00000008261   ⟹   ENSSSCP00000008042
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1759,964,585 - 59,967,113 (-)Ensembl
RefSeq Acc Id: XM_003134506   ⟹   XP_003134554
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11759,963,560 - 59,967,143 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003134554   ⟸   XM_003134506
- UniProtKB: F1RJ12 (UniProtKB/TrEMBL),   A0A8D0WY19 (UniProtKB/TrEMBL),   A0A4X1UUY9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000008042   ⟸   ENSSSCT00000008261
Protein Domains
CBM21


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007530 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025065565 UniProtKB/TrEMBL
  ENSSSCG00030046238 UniProtKB/TrEMBL
  ENSSSCG00035062621 UniProtKB/TrEMBL
  ENSSSCG00045001269 UniProtKB/TrEMBL
  ENSSSCG00050070562 UniProtKB/TrEMBL
  ENSSSCG00055004977 UniProtKB/TrEMBL
  ENSSSCG00060025026 UniProtKB/TrEMBL
  ENSSSCG00065074284 UniProtKB/TrEMBL
  ENSSSCG00070020053 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008261 ENTREZGENE
  ENSSSCT00000008261.3 UniProtKB/TrEMBL
  ENSSSCT00025089971.1 UniProtKB/TrEMBL
  ENSSSCT00030064489.1 UniProtKB/TrEMBL
  ENSSSCT00035084154.1 UniProtKB/TrEMBL
  ENSSSCT00045001979.1 UniProtKB/TrEMBL
  ENSSSCT00050096190.1 UniProtKB/TrEMBL
  ENSSSCT00055009775.1 UniProtKB/TrEMBL
  ENSSSCT00060033909.1 UniProtKB/TrEMBL
  ENSSSCT00065102300.1 UniProtKB/TrEMBL
  ENSSSCT00070039745.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.2440 UniProtKB/TrEMBL
InterPro CBM21_dom UniProtKB/TrEMBL
  CBM21_dom_sf UniProtKB/TrEMBL
  Pase-1_reg-su_3B/C/D_met UniProtKB/TrEMBL
  PP1_regulatory_subunit_3 UniProtKB/TrEMBL
KEGG Report ssc:100521997 UniProtKB/TrEMBL
NCBI Gene PPP1R3D ENTREZGENE
PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT UniProtKB/TrEMBL
  PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 3D UniProtKB/TrEMBL
Pfam CBM_21 UniProtKB/TrEMBL
PIRSF PP1_GT_animal UniProtKB/TrEMBL
PROSITE CBM21 UniProtKB/TrEMBL
UniProt A0A4X1UUY9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WY19 ENTREZGENE, UniProtKB/TrEMBL
  F1RJ12 ENTREZGENE, UniProtKB/TrEMBL
  Q2I6Y4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:96500 ENTREZGENE