Dhrs4 (dehydrogenase/reductase 4) - Rat Genome Database

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Gene: Dhrs4 (dehydrogenase/reductase 4) Rattus norvegicus
Analyze
Symbol: Dhrs4
Name: dehydrogenase/reductase 4
RGD ID: 708482
Description: Predicted to enable several functions, including 3-beta-hydroxysteroid 3-dehydrogenase (NADP+) activity; alcohol dehydrogenase (NADP+) activity; and retinal dehydrogenase activity. Predicted to be involved in several processes, including positive regulation of reactive oxygen species metabolic process; retinal metabolic process; and steroid metabolic process. Located in peroxisome. Orthologous to several human genes including DHRS4 (dehydrogenase/reductase 4); PARTICIPATES IN retinol metabolic pathway; vitamin A deficiency pathway; INTERACTS WITH (+)-schisandrin B; 2,2',4,4'-Tetrabromodiphenyl ether; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: carbonyl reductase; CR; DCR-AKL; dehydrogenase/reductase (SDR family) member 4; dehydrogenase/reductase SDR family member 4; LOC266686; NADP-retinol dehydrogenase; NADPH-dependent carbonyl reductase; NADPH-dependent carbonyl reductase/NADP-retinol dehydrogenase; NADPH-dependent retinol dehydrogenase/reductase; NDRD; peroxisomal short-chain alcohol dehydrogenase; PHCR; PSCD; short chain dehydrogenase/reductase family 25C member 2
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,924,482 - 32,948,103 (+)NCBIGRCr8
mRatBN7.21528,966,544 - 28,978,135 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,966,553 - 28,978,127 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1530,812,271 - 30,823,840 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,959,479 - 31,971,048 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01530,201,827 - 30,213,396 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01534,155,043 - 34,167,073 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,155,504 - 34,167,072 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,045,908 - 38,057,499 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,609,570 - 33,621,142 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11533,625,453 - 33,636,460 (+)NCBI
Celera1528,542,580 - 28,554,149 (+)NCBICelera
Cytogenetic Map15p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dhrs4RatCOVID-19  ISORGD:7321499068941mRNA:increased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226|REF_RGD_ID:28912744
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dhrs4RatBrain-Lung-Thyroid Syndrome  ISORGD:7321498554872ClinVar Annotator: match by term: Brain-lung-thyroid syndromeClinVarPMID:25741868
Dhrs4Ratlysinuric protein intolerance  ISORGD:7321498554872ClinVar Annotator: match by term: Lysinuric protein intoleranceClinVarPMID:28492532
Dhrs4RatSpecific Granule Deficiency  ISORGD:7321498554872ClinVar Annotator: match by term: Specific granule deficiencyClinVarPMID:28492532

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dhrs4Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of DHRS4 mRNA]CTDPMID:31150632
Dhrs4Rat(1->4)-beta-D-glucan multiple interactionsISORGD:7321506480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of DHRS4 mRNACTDPMID:36331819
Dhrs4Rat1,2-dimethylhydrazine increases expressionISORGD:73215064804641,2-Dimethylhydrazine results in increased expression of DHRS4 mRNACTDPMID:22206623
Dhrs4Rat17beta-estradiol increases expressionISORGD:7321506480464Estradiol results in increased expression of DHRS4 mRNACTDPMID:39298647
Dhrs4Rat2,2',4,4'-Tetrabromodiphenyl ether increases expressionEXP 64804642,2',4,4'-tetrabromodiphenyl ether results in increased expression of DHRS4 mRNACTDPMID:27291303
Dhrs4Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:7321506480464Tetrachlorodibenzodioxin results in decreased expression of DHRS4 mRNACTDPMID:19770486
Dhrs4Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:7321506480464Tetrachlorodibenzodioxin affects the expression of DHRS4 mRNACTDPMID:21570461
Dhrs4Rat3,3',4,4'-tetrachlorobiphenyl multiple interactionsISORGD:73215064804643,4,3',4'-tetrachlorobiphenyl inhibits the reaction [Dietary Fats results in increased expression of DHRS4 mRNA]CTDPMID:19467301
Dhrs4Rat4,4'-diaminodiphenylmethane decreases expressionISORGD:73215064804644,4'-diaminodiphenylmethane results in decreased expression of DHRS4 mRNACTDPMID:18648102
Dhrs4Rat4,4'-sulfonyldiphenol increases expressionISORGD:7321506480464bisphenol S results in increased expression of DHRS4 mRNACTDPMID:39298647
Dhrs4Rat4,4'-sulfonyldiphenol increases expressionISORGD:7321496480464bisphenol S results in increased expression of DHRS4 proteinCTDPMID:34186270
Dhrs4Rat5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole affects expressionEXP 6480464Omeprazole affects the expression of DHRS4 mRNACTDPMID:19483382
Dhrs4Rat6-propyl-2-thiouracil affects expressionEXP 6480464Propylthiouracil affects the expression of DHRS4 mRNACTDPMID:19483382
Dhrs4Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of DHRS4 mRNACTDPMID:24780913
Dhrs4Ratacetamide decreases expressionEXP 6480464acetamide results in decreased expression of DHRS4 mRNACTDPMID:31881176
Dhrs4Rataflatoxin B1 decreases methylationISORGD:7321496480464Aflatoxin B1 results in decreased methylation of DHRS4 geneCTDPMID:27153756
Dhrs4Ratall-trans-retinal increases reductionISORGD:7321506480464DHRS4 protein results in increased reduction of RetinaldehydeCTDPMID:12680773
Dhrs4Ratall-trans-retinoic acid decreases expressionISORGD:7321496480464Tretinoin results in decreased expression of DHRS4 mRNACTDPMID:33167477
Dhrs4Ratamiodarone affects expressionEXP 6480464Amiodarone affects the expression of DHRS4 mRNACTDPMID:19483382
Dhrs4Ratammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of DHRS4 mRNACTDPMID:16483693

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Biological Process
1 to 14 of 14 rows

  
Object Symbol
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Source
Original Reference(s)
Dhrs4Ratalcohol metabolic process involved_inISORGD:7321491624291 PMID:18571493RGDPMID:18571493
Dhrs4Ratketone metabolic process involved_inISORGD:7321491624291 PMID:18571493, PMID:19056333RGDPMID:18571493|PMID:19056333
Dhrs4Ratketone metabolic process involved_inISSUniProtKB:Q8WNV71600115GO_REF:0000024UniProtGO_REF:0000024
Dhrs4Ratketone metabolic process involved_inISORGD:140691781624291 PMID:12604222RGDPMID:12604222
Dhrs4Ratpositive regulation of reactive oxygen species metabolic process involved_inISORGD:7321491624291 PMID:19442656RGDPMID:19442656
Dhrs4Ratretinal metabolic process acts_upstream_of_or_withinIEAUniProtKB:Q99LB2|ensembl:ENSMUSP000000228211600115GO_REF:0000107EnsemblGO_REF:0000107
Dhrs4Ratretinal metabolic process acts_upstream_of_or_withinISORGD:7321501624291 PMID:12680773RGDPMID:12680773
Dhrs4Ratretinal metabolic process involved_inIBAMGI:90169|PANTHER:PTN0006735581600115GO_REF:0000033GO_CentralGO_REF:0000033
Dhrs4Ratretinoid metabolic process involved_inISORGD:140691781624291 PMID:12604222RGDPMID:12604222
Dhrs4Ratretinoid metabolic process involved_inISSUniProtKB:Q8WNV71600115GO_REF:0000024UniProtGO_REF:0000024
Dhrs4Ratretinol metabolic process involved_inIEAGO:00526501600115GO_REF:0000108GOCGO_REF:0000108
Dhrs4Ratsteroid metabolic process involved_inISSUniProtKB:Q8WNV71600115GO_REF:0000024UniProtGO_REF:0000024
Dhrs4Ratsteroid metabolic process involved_inISORGD:140691781624291 PMID:12604222, PMID:19056333RGDPMID:12604222|PMID:19056333
Dhrs4Ratsteroid metabolic process involved_inISORGD:7321491624291 PMID:18571493, PMID:19056333RGDPMID:18571493|PMID:19056333
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Cellular Component
1 to 13 of 13 rows

  
Object Symbol
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Original Reference(s)
Dhrs4Ratmitochondrion located_inISSUniProtKB:Q99LB21600115GO_REF:0000024UniProtGO_REF:0000024
Dhrs4Ratmitochondrion located_inIEAUniProtKB:Q99LB2|ensembl:ENSMUSP000000228211600115GO_REF:0000107EnsemblGO_REF:0000107
Dhrs4Ratmitochondrion located_inISORGD:7321501624291 PMID:14651853RGDPMID:14651853
Dhrs4Ratnucleus located_inISORGD:732149,UniProtKB:Q9BTZ2-71624291 PMID:22227495RGDPMID:22227495
Dhrs4Ratperoxisomal membrane located_inISORGD:7321491624291 PMID:10333503RGDPMID:10333503
Dhrs4Ratperoxisome  IDA 70713 RGD 
Dhrs4Ratperoxisome located_inIEAUniProtKB:Q99LB2|ensembl:ENSMUSP000000228211600115GO_REF:0000107EnsemblGO_REF:0000107
Dhrs4Ratperoxisome located_inIEAUniProtKB-KW:KW-05761600115GO_REF:0000043UniProtGO_REF:0000043
Dhrs4Ratperoxisome located_inIEAUniProtKB-SubCell:SL-02041600115GO_REF:0000044UniProtGO_REF:0000044
Dhrs4Ratperoxisome located_inISORGD:7321501624291 PMID:12680773RGDPMID:12680773
Dhrs4Ratperoxisome is_active_inIBAMGI:90169|PANTHER:PTN000673558|RGD:708482|UniProtKB:Q8WNV7|UniProtKB:Q9BTZ21600115GO_REF:0000033GO_CentralGO_REF:0000033
Dhrs4Ratperoxisome located_inISORGD:140691781624291 PMID:12604222, PMID:18334214RGDPMID:12604222|PMID:18334214
Dhrs4Ratperoxisome located_inISORGD:7321491624291 PMID:17230527RGDPMID:17230527
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Molecular Function
1 to 20 of 20 rows

  
Object Symbol
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Reference
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Original Reference(s)
Dhrs4Rat3-beta-hydroxysteroid 3-dehydrogenase (NADP+) activity enablesISORGD:7321491624291 PMID:18571493, PMID:19056333RGDPMID:18571493|PMID:19056333
Dhrs4Rat3-beta-hydroxysteroid 3-dehydrogenase (NADP+) activity enablesISORGD:732149|UniProtKB:Q9BTZ2-81624291 PMID:23128527RGDPMID:23128527
Dhrs4Rat3-beta-hydroxysteroid 3-dehydrogenase (NADP+) activity enablesISORGD:140691781624291 PMID:19056333RGDPMID:19056333
Dhrs4Ratalcohol dehydrogenase [NAD(P)+] activity enablesISORGD:7321491624291 PMID:18571493RGDPMID:18571493
Dhrs4Ratall-trans-retinol dehydrogenase (NADP+) activity enablesISSUniProtKB:Q8WNV71600115GO_REF:0000024UniProtGO_REF:0000024
Dhrs4Ratall-trans-retinol dehydrogenase (NADP+) activity enablesIEARHEA:250331600115GO_REF:0000116RHEAGO_REF:0000116
Dhrs4Ratall-trans-retinol dehydrogenase (NADP+) activity enablesISORGD:140691781624291 PMID:12604222RGDPMID:12604222
Dhrs4Ratcarbonyl reductase (NADPH) activity enablesISORGD:7321491624291 PMID:18571493, PMID:19056333RGDPMID:18571493|PMID:19056333
Dhrs4Ratcarbonyl reductase (NADPH) activity enablesIEAEC:1.1.1.1841600115GO_REF:0000003UniProtGO_REF:0000003
Dhrs4Ratcarbonyl reductase (NADPH) activity enablesIEARHEA:192571600115GO_REF:0000116RHEAGO_REF:0000116
Dhrs4Ratcarbonyl reductase (NADPH) activity enablesIBAPANTHER:PTN001549940|UniProtKB:Q13268|UniProtKB:Q9BTZ2|WB:WBGene000100631600115GO_REF:0000033GO_CentralGO_REF:0000033
Dhrs4Ratcarbonyl reductase (NADPH) activity enablesISORGD:732149|UniProtKB:Q9BTZ2-81624291 PMID:23128527RGDPMID:23128527
Dhrs4Ratidentical protein binding enablesISORGD:7321491624291UniProtKB:Q9BTZ2 PMID:18571493RGDPMID:18571493
Dhrs4Ratidentical protein binding enablesISSUniProtKB:Q8WNV71600115GO_REF:0000024UniProtGO_REF:0000024
Dhrs4Ratidentical protein binding enablesISORGD:140691781624291UniProtKB:Q8WNV7 PMID:18334214RGDPMID:18334214
Dhrs4Ratoxidoreductase activity enablesIEAUniProtKB-KW:KW-05601600115GO_REF:0000043UniProtGO_REF:0000043
Dhrs4Ratoxidoreductase activity enablesIEAInterPro:IPR0209041600115GO_REF:0000002InterProGO_REF:0000002
Dhrs4Ratoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor enablesISORGD:7321491624291 PMID:19442656RGDPMID:19442656
Dhrs4Ratretinal dehydrogenase activity enablesISORGD:7321501624291 PMID:12680773RGDPMID:12680773
Dhrs4Ratretinal dehydrogenase activity enablesIEAUniProtKB:Q99LB2|ensembl:ENSMUSP000000228211600115GO_REF:0000107EnsemblGO_REF:0000107
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Imported Annotations - SMPDB

Object Symbol
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Term
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Evidence
With
Reference
Notes
Source
Original Reference(s)
Dhrs4Ratretinol metabolic pathway   ISORGD:73214910402751 SMPDBSMP:00074
Dhrs4Ratvitamin A deficiency pathway  ISORGD:73214910402751 SMPDBSMP:00336

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Dhrs4Ratretinol metabolic pathway   IEA 6907045 KEGGrno:00830

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#
Reference Title
Reference Citation
1. Identification of peroxisomal proteins by using M13 phage protein VI phage display: molecular evidence that mammalian peroxisomes contain a 2,4-dienoyl-CoA reductase. Fransen M, etal., Biochem J 1999 Jun 1;340 ( Pt 2):561-8.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
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PMID:12680773   PMID:14651853   PMID:17230527   PMID:18334214   PMID:18571493   PMID:19056333   PMID:19442656   PMID:20178365   PMID:21525035   PMID:22227495   PMID:23036705   PMID:23376485  
PMID:25931508  



Dhrs4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,924,482 - 32,948,103 (+)NCBIGRCr8
mRatBN7.21528,966,544 - 28,978,135 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,966,553 - 28,978,127 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1530,812,271 - 30,823,840 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,959,479 - 31,971,048 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01530,201,827 - 30,213,396 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01534,155,043 - 34,167,073 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,155,504 - 34,167,072 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,045,908 - 38,057,499 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,609,570 - 33,621,142 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11533,625,453 - 33,636,460 (+)NCBI
Celera1528,542,580 - 28,554,149 (+)NCBICelera
Cytogenetic Map15p13NCBI
DHRS4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381423,953,770 - 23,969,279 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1423,953,734 - 23,969,279 (+)EnsemblGRCh38hg38GRCh38
GRCh371424,422,979 - 24,438,488 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,492,805 - 23,508,328 (+)NCBINCBI36Build 36hg18NCBI36
Build 341423,492,804 - 23,508,326NCBI
Celera144,285,601 - 4,303,126 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef144,539,991 - 4,555,519 (+)NCBIHuRef
CHM1_11424,421,623 - 24,437,128 (+)NCBICHM1_1
T2T-CHM13v2.01418,154,102 - 18,169,615 (+)NCBIT2T-CHM13v2.0
Dhrs4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,715,880 - 55,727,797 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,716,215 - 55,727,797 (+)EnsemblGRCm39 Ensembl
GRCm381455,478,741 - 55,490,340 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,478,758 - 55,490,340 (+)EnsemblGRCm38mm10GRCm38
MGSCv371456,097,595 - 56,109,177 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,432,868 - 54,444,411 (+)NCBIMGSCv36mm8
Celera1453,283,670 - 53,295,252 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
DHRS4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,352,031 - 25,367,508 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11424,568,524 - 24,584,000 (+)NCBINHGRI_mPanPan1
PanPan1.11422,831,557 - 22,953,699 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1422,831,756 - 22,846,695 (+)Ensemblpanpan1.1panPan2
DHRS4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,046,532 - 4,058,498 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,046,544 - 4,084,744 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,968,424 - 3,980,384 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.084,157,197 - 4,169,172 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,157,179 - 4,169,172 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,847,979 - 3,859,935 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,909,733 - 3,921,692 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,171,825 - 4,183,775 (+)NCBIUU_Cfam_GSD_1.0
DHRS4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,242,124 - 75,255,598 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,242,121 - 75,255,594 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,512,359 - 80,525,829 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103231490
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12924,170,090 - 24,185,509 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2924,169,818 - 24,185,634 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605922,224,518 - 22,239,925 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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Variants in Dhrs4
34 total Variants

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:38
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000024782
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 30 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat

1 to 10 of 30 rows
BE114851  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,975,446 - 28,975,617 (+)MAPPERmRatBN7.2
Rnor_6.01534,164,385 - 34,164,555NCBIRnor6.0
Rnor_5.01538,054,811 - 38,054,981UniSTSRnor5.0
RGSC_v3.41533,618,454 - 33,618,624UniSTSRGSC3.4
Celera1528,551,461 - 28,551,631UniSTS
RH 3.4 Map15260.61UniSTS
Cytogenetic Map15p13UniSTS
RH130081  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,977,811 - 28,977,998 (+)MAPPERmRatBN7.2
Rnor_6.01534,166,750 - 34,166,936NCBIRnor6.0
Rnor_5.01538,057,176 - 38,057,362UniSTSRnor5.0
RGSC_v3.41533,620,819 - 33,621,005UniSTSRGSC3.4
Celera1528,553,826 - 28,554,012UniSTS
RH 3.4 Map15260.81UniSTS
Cytogenetic Map15p13UniSTS
BE113024  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,968,298 - 28,968,515 (+)MAPPERmRatBN7.2
Rnor_6.01534,157,238 - 34,157,454NCBIRnor6.0
Rnor_5.01538,047,662 - 38,047,878UniSTSRnor5.0
RGSC_v3.41533,611,304 - 33,611,520UniSTSRGSC3.4
Celera1528,544,314 - 28,544,530UniSTS
RH 3.4 Map15260.21UniSTS
Cytogenetic Map15p13UniSTS
BE120291  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,970,324 - 28,970,507 (+)MAPPERmRatBN7.2
Rnor_6.01534,159,263 - 34,159,445NCBIRnor6.0
Rnor_5.01538,049,689 - 38,049,871UniSTSRnor5.0
RGSC_v3.41533,613,332 - 33,613,514UniSTSRGSC3.4
Celera1528,546,339 - 28,546,521UniSTS
RH 3.4 Map15260.81UniSTS
Cytogenetic Map15p13UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000024782   ⟹   ENSRNOP00000024782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1528,966,553 - 28,978,127 (+)Ensembl
Rnor_6.0 Ensembl1534,155,504 - 34,167,072 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119531   ⟹   ENSRNOP00000082872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1528,966,553 - 28,977,730 (+)Ensembl
RefSeq Acc Id: NM_153315   ⟹   NP_695227
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,936,534 - 32,948,103 (+)NCBI
mRatBN7.21528,966,565 - 28,978,135 (+)NCBI
Rnor_6.01534,155,504 - 34,167,073 (+)NCBI
Rnor_5.01538,045,908 - 38,057,499 (+)NCBI
RGSC_v3.41533,609,570 - 33,621,142 (+)RGD
Celera1528,542,580 - 28,554,149 (+)RGD
Sequence:
RefSeq Acc Id: XM_039093040   ⟹   XP_038948968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,936,515 - 32,946,246 (+)NCBI
mRatBN7.21528,966,544 - 28,976,256 (+)NCBI
RefSeq Acc Id: XM_063274033   ⟹   XP_063130103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,924,482 - 32,948,096 (+)NCBI
RefSeq Acc Id: NP_695227   ⟸   NM_153315
- UniProtKB: Q6IRD4 (UniProtKB/Swiss-Prot),   Q8VID1 (UniProtKB/Swiss-Prot),   A0A8I5ZUW8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000024782   ⟸   ENSRNOT00000024782
RefSeq Acc Id: XP_038948968   ⟸   XM_039093040
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000082872   ⟸   ENSRNOT00000119531
RefSeq Acc Id: XP_063130103   ⟸   XM_063274033
- Peptide Label: isoform X1
- UniProtKB: Q8VID1 (UniProtKB/Swiss-Prot),   Q6IRD4 (UniProtKB/Swiss-Prot),   A0A8I5ZUW8 (UniProtKB/TrEMBL)

Name Modeler Protein Id AA Range Protein Structure
AF-Q8VID1-F1-model_v2 AlphaFold Q8VID1 1-279 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 28 of 28 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-13725 BioCyc
Ensembl Genes ENSRNOG00000018239 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000024782 ENTREZGENE
  ENSRNOT00000024782.5 UniProtKB/Swiss-Prot
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7099044 IMAGE-MGC_LOAD
InterPro NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot
  Sc_DH/Rdtase_CS UniProtKB/Swiss-Prot
  SDR_fam UniProtKB/Swiss-Prot
KEGG Report rno:266686 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91451 IMAGE-MGC_LOAD
NCBI Gene 266686 ENTREZGENE
PANTHER DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4 UniProtKB/Swiss-Prot
  PTHR43943:SF8 UniProtKB/Swiss-Prot
Pfam adh_short_C2 UniProtKB/Swiss-Prot
PhenoGen Dhrs4 PhenoGen
PRINTS GDHRDH UniProtKB/Swiss-Prot
  SDRFAMILY UniProtKB/Swiss-Prot
PROSITE ADH_SHORT UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000018239 RatGTEx
Superfamily-SCOP SSF51735 UniProtKB/Swiss-Prot
UniProt A0A8I5ZUW8 ENTREZGENE, UniProtKB/TrEMBL
  A6KGZ7_RAT UniProtKB/TrEMBL
  A6KGZ8_RAT UniProtKB/TrEMBL
  DHRS4_RAT UniProtKB/Swiss-Prot
  Q6IRD4 ENTREZGENE
  Q8VID1 ENTREZGENE
UniProt Secondary Q6IRD4 UniProtKB/Swiss-Prot
1 to 28 of 28 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-01 Dhrs4  dehydrogenase/reductase 4  Dhrs4  dehydrogenase/reductase (SDR family) member 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Dhrs4  dehydrogenase/reductase (SDR family) member 4  LOC266686  carbonyl reductase  Symbol and Name updated 1299863 APPROVED