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Gene: Svop (SV2 related protein) Rattus norvegicus

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Symbol:

Svop

Name:

SV2 related protein

RGD ID:

620277

Description:

Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Located in synaptic vesicle. Is active in synaptic vesicle membrane. Orthologous to human SVOP (SV2 related protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC102553250; SV2-related protein; synaptic vesicle 2-related protein; synaptic vesicle 2-related protein-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SVOP (SV2 related protein)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Svop (SV2 related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Svop (SV2 related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SVOP (SV2 related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SVOP (SV2 related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Svop (SV2 related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SVOP (SV2 related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SVOP (SV2 related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Svop (SV2 related protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SVOP (SV2 related protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Svop (SV2 related protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	svopa (SV2 related protein a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	svopb (SV2 related protein b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	svop-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4324	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	svop	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	48,191,549 - 48,251,185 (+)	NCBI		GRCr8
mRatBN7.2	12	42,530,991 - 42,589,381 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	42,531,032 - 42,590,572 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	43,698,274 - 43,755,537 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	44,311,865 - 44,369,127 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	43,372,380 - 43,429,646 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	48,292,272 - 48,351,974 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	48,292,273 - 48,351,084 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	50,074,383 - 50,132,727 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	43,566,784 - 43,624,986 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	43,430,148 - 43,488,374 (+)	NCBI
Celera	12	44,135,621 - 44,193,944 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Svop	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of SVOP mRNA	CTD	PMID:33387578
Svop	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	Svop (Mus musculus)	6480464	bisphenol S results in decreased expression of SVOP mRNA	CTD	PMID:30951980
Svop	Rat	4,4'-sulfonyldiphenol	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of SVOP mRNA	CTD	PMID:36041667
Svop	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of SVOP mRNA	CTD	PMID:24780913
Svop	Rat	acetamide	increases expression	EXP		6480464	acetamide results in increased expression of SVOP mRNA	CTD	PMID:31881176
Svop	Rat	aflatoxin B1	increases expression	EXP		6480464	Aflatoxin B1 results in increased expression of SVOP mRNA	CTD	PMID:23630614
Svop	Rat	all-trans-retinoic acid	increases expression	ISO	SVOP (Homo sapiens)	6480464	Tretinoin results in increased expression of SVOP mRNA	CTD	PMID:23724009
Svop	Rat	ammonium chloride	affects expression	EXP		6480464	Ammonium Chloride affects the expression of SVOP mRNA	CTD	PMID:16483693
Svop	Rat	benzo[a]pyrene	decreases expression	EXP		6480464	Benzo(a)pyrene results in decreased expression of SVOP mRNA	CTD	PMID:21839799
Svop	Rat	benzo[a]pyrene	increases methylation	ISO	SVOP (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of SVOP promoter	CTD	PMID:27901495
Svop	Rat	benzo[a]pyrene	decreases methylation	ISO	Svop (Mus musculus)	6480464	Benzo(a)pyrene results in decreased methylation of SVOP intron	CTD	PMID:27901495
Svop	Rat	benzo[a]pyrene	decreases methylation	ISO	SVOP (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of SVOP 3' UTR	CTD	PMID:27901495
Svop	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of SVOP mRNA	CTD	PMID:25181051
Svop	Rat	bisphenol A	decreases expression	ISO	Svop (Mus musculus)	6480464	bisphenol A results in decreased expression of SVOP mRNA	CTD	PMID:32156529
Svop	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of SVOP mRNA	CTD	PMID:36041667
Svop	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of SVOP mRNA	CTD	PMID:30816183 and PMID:34947998
Svop	Rat	bisphenol F	decreases expression	ISO	Svop (Mus musculus)	6480464	bisphenol F results in decreased expression of SVOP mRNA	CTD	PMID:30951980
Svop	Rat	bisphenol F	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of SVOP mRNA	CTD	PMID:36041667
Svop	Rat	bromobenzene	increases expression	EXP		6480464	bromobenzene results in increased expression of SVOP mRNA	CTD	PMID:32479839
Svop	Rat	cantharidin	increases expression	ISO	Svop (Mus musculus)	6480464	Cantharidin results in increased expression of SVOP mRNA	CTD	PMID:36907384
Svop	Rat	CGP 52608	multiple interactions	ISO	SVOP (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to SVOP gene]	CTD	PMID:28238834
Svop	Rat	chlorpyrifos	increases expression	ISO	Svop (Mus musculus)	6480464	Chlorpyrifos results in increased expression of SVOP mRNA	CTD	PMID:32715474
Svop	Rat	ethanol	affects splicing	ISO	Svop (Mus musculus)	6480464	Ethanol affects the splicing of SVOP mRNA	CTD	PMID:30319688
Svop	Rat	ethanol	affects expression	ISO	Svop (Mus musculus)	6480464	Ethanol affects the expression of SVOP mRNA	CTD	PMID:30319688
Svop	Rat	flavonoids	increases expression	EXP		6480464	Flavonoids results in increased expression of SVOP mRNA	CTD	PMID:18035473
Svop	Rat	folic acid	increases expression	ISO	Svop (Mus musculus)	6480464	Folic Acid results in increased expression of SVOP mRNA	CTD	PMID:25629700
Svop	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of SVOP mRNA	CTD	PMID:33387578
Svop	Rat	glyphosate	increases methylation	EXP		6480464	Glyphosate results in increased methylation of SVOP gene	CTD	PMID:31011160
Svop	Rat	hydroxyurea	increases expression	ISO	Svop (Mus musculus)	6480464	Hydroxyurea results in increased expression of SVOP mRNA	CTD	PMID:27208086
Svop	Rat	ozone	multiple interactions	ISO	Svop (Mus musculus)	6480464	[Air Pollutants results in increased abundance of Ozone] which results in decreased expression of SVOP mRNA	CTD	PMID:27106289
Svop	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of SVOP mRNA	CTD	PMID:30723492 and PMID:33387578
Svop	Rat	perfluorohexanesulfonic acid	decreases expression	ISO	Svop (Mus musculus)	6480464	perfluorohexanesulfonic acid results in decreased expression of SVOP mRNA	CTD	PMID:37315490
Svop	Rat	resveratrol	multiple interactions	ISO	SVOP (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in decreased expression of SVOP mRNA	CTD	PMID:23557933
Svop	Rat	sarin	decreases expression	EXP		6480464	Sarin results in decreased expression of SVOP mRNA	CTD	PMID:16733813
Svop	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of SVOP mRNA	CTD	PMID:23411599
Svop	Rat	titanium dioxide	decreases methylation	ISO	Svop (Mus musculus)	6480464	titanium dioxide results in decreased methylation of SVOP gene	CTD	PMID:35295148
Svop	Rat	titanium dioxide	increases methylation	ISO	Svop (Mus musculus)	6480464	titanium dioxide results in increased methylation of SVOP gene	CTD	PMID:35295148
Svop	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of SVOP mRNA	CTD	PMID:33387578
Svop	Rat	triptonide	increases expression	ISO	Svop (Mus musculus)	6480464	triptonide results in increased expression of SVOP mRNA	CTD	PMID:33045310
Svop	Rat	valproic acid	decreases methylation	ISO	SVOP (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of SVOP gene	CTD	PMID:29154799
Svop	Rat	valproic acid	increases expression	ISO	SVOP (Homo sapiens)	6480464	Valproic Acid results in increased expression of SVOP mRNA	CTD	PMID:28001369
Svop	Rat	vinclozolin	affects expression	EXP		6480464	vinclozolin affects the expression of SVOP mRNA	CTD	PMID:19015723

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Svop	Rat	transmembrane transport	involved_in	IEA	InterPro:IPR005828 and InterPro:IPR011701	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Svop	Rat	cytoplasmic vesicle	located_in	IEA	UniProtKB-KW:KW-0968	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Svop	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Svop	Rat	membrane	located_in	IEA	InterPro:IPR004749 and InterPro:IPR005828	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Svop	Rat	synapse	located_in	IEA	UniProtKB-KW:KW-0770	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Svop	Rat	synaptic vesicle	located_in	IDA		634114	PMID:9801366	HGNC-UCL
Svop	Rat	synaptic vesicle	located_in	IEA	ARBA:ARBA00029077	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Svop	Rat	synaptic vesicle membrane	located_in	IEA	UniProtKB-SubCell:SL-0260	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Svop	Rat	synaptic vesicle membrane	is_active_in	IEP		634114	PMID:9801366	SynGO
Svop	Rat	synaptic vesicle membrane	is_active_in	IDA		634114	PMID:9801366	SynGO

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Svop	Rat	protein binding	enables	ISO	SVOP (Homo sapiens)	1624291	UniProtKB:Q9H0Q3 and PMID:32296183	RGD	PMID:32296183
Svop	Rat	transmembrane transporter activity	enables	IEA	InterPro:IPR005828 more ...	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

#	Reference Title	Reference Citation
1.	SVOP, an evolutionarily conserved synaptic vesicle protein, suggests novel transport functions of synaptic vesicles.	Janz R, etal., J Neurosci 1998 Nov 15;18(22):9269-81.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Svop
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	48,191,549 - 48,251,185 (+)	NCBI		GRCr8
mRatBN7.2	12	42,530,991 - 42,589,381 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	42,531,032 - 42,590,572 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	43,698,274 - 43,755,537 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	44,311,865 - 44,369,127 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	43,372,380 - 43,429,646 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	48,292,272 - 48,351,974 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	48,292,273 - 48,351,084 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	50,074,383 - 50,132,727 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	43,566,784 - 43,624,986 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	43,430,148 - 43,488,374 (+)	NCBI
Celera	12	44,135,621 - 44,193,944 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

SVOP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	108,907,741 - 109,021,068 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	108,907,741 - 109,021,068 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	109,301,517 - 109,458,873 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	107,828,787 - 107,856,860 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	107,807,127 - 107,835,197	NCBI
Celera	12	108,973,131 - 109,082,778 (-)	NCBI		Celera
Cytogenetic Map	12	q24.11	NCBI
HuRef	12	106,369,094 - 106,436,914 (-)	NCBI		HuRef
CHM1_1	12	109,272,304 - 109,340,104 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	108,882,524 - 108,995,882 (-)	NCBI		T2T-CHM13v2.0

Svop
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	114,164,974 - 114,229,441 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	114,164,971 - 114,229,631 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	114,026,913 - 114,091,380 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	114,026,910 - 114,091,570 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	114,476,922 - 114,541,389 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	114,287,912 - 114,352,379 (-)	NCBI		MGSCv36	mm8
Celera	5	111,128,474 - 111,193,006 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	55.94	NCBI

Svop
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	10,131,846 - 10,215,725 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	10,131,846 - 10,215,296 (-)	NCBI	ChiLan1.0	ChiLan1.0

SVOP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	116,975,286 - 117,086,287 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	116,971,684 - 117,082,685 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	106,486,060 - 106,596,973 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	109,878,044 - 109,990,827 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	109,878,044 - 109,990,827 (-)	Ensembl	panpan1.1		panPan2

SVOP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	17,963,412 - 18,034,343 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	17,963,706 - 18,032,682 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	17,767,842 - 17,838,286 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	18,307,568 - 18,377,952 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	18,307,561 - 18,378,686 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	17,977,385 - 18,047,619 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	18,298,271 - 18,368,816 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	18,316,793 - 18,387,599 (+)	NCBI		UU_Cfam_GSD_1.0

Svop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	144,629,452 - 144,711,574 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936769	765,719 - 846,379 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936769	764,320 - 846,442 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SVOP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	41,845,205 - 41,928,989 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	41,829,649 - 41,931,359 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	44,371,243 - 44,468,485 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SVOP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	104,113,489 - 104,220,821 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	104,110,374 - 104,220,624 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	140,879,763 - 140,986,600 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Svop
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	12,119,443 - 12,199,929 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	12,119,699 - 12,199,908 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Svop
692 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	80
Count of miRNA genes:	61
Interacting mature miRNAs:	78
Transcripts:	ENSRNOT00000000874
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	19144362	46669029	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	23081340	44726024	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	20328819	46669029	Rat
61324	Eae5	Experimental allergic encephalomyelitis QTL 5	14		nervous system integrity trait (VT:0010566)	percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)	12	19610870	46669029	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	19610870	42828880	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	13182736	46669029	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	13198157	46669029	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	12812385	46669029	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	32103174	45899022	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	13182736	46669029	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	28064433	46669029	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	12351619	46669029	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	28064433	45899022	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	23081340	43551788	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	12812385	46669029	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat

BE097508

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	42,589,209 - 42,589,359 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	48,350,558 - 48,350,707	NCBI	Rnor6.0
Rnor_5.0	12	50,132,201 - 50,132,350	UniSTS	Rnor5.0
RGSC_v3.4	12	43,624,460 - 43,624,609	UniSTS	RGSC3.4
Celera	12	44,193,418 - 44,193,567	UniSTS
Cytogenetic Map	12	q16	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	5	34	111	67	63	41	7	41	4	154	56	93	43	57	22


RefSeq Transcripts	NM_134404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC134141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF060173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB757116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CQ819369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000000874 ⟹ ENSRNOP00000000874

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	42,531,032 - 42,590,572 (+)	Ensembl
Rnor_6.0 Ensembl	12	48,292,273 - 48,351,084 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084511 ⟹ ENSRNOP00000071220

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	42,554,828 - 42,589,736 (+)	Ensembl
Rnor_6.0 Ensembl	12	48,316,143 - 48,350,805 (+)	Ensembl

RefSeq Acc Id:

NM_134404 ⟹ NP_599231

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,191,549 - 48,249,940 (+)	NCBI
mRatBN7.2	12	42,530,991 - 42,589,381 (+)	NCBI
Rnor_6.0	12	48,292,346 - 48,351,084 (+)	NCBI
Rnor_5.0	12	50,074,383 - 50,132,727 (+)	NCBI
RGSC_v3.4	12	43,566,784 - 43,624,986 (+)	RGD
Celera	12	44,135,621 - 44,193,944 (+)	RGD

Sequence:

show sequence

TCCCGGGCAGGGCTCCCTCCCCCAGCAGCTGCCCTGCGAGGAAGCCGCGGAGCTGTCCAGCATCCCGGTGCTGAAAGCCGAAGCGCCGGCCCTGCTTCACCATGTAAGGGTCATGCCCAGGCTCGCCC
TGGCGCAGCGCGGACATGGAGGAGGACCTGTTCCAGCTCAGGCAGTTGCCGGTGGTGAAATTCCGCCGCACAGGAGAGAGCGCACGGTCAGAGGACGACGCGGCTTCCGGGGAACATGATGTTCAGAT
TGAGGGGGTCCGAGTGGGCCTAGAAGCTGTCGAGCTGGATGATGGAGCAGCTGTCCCCAAGGAGTTTGCCAATCCCACTGATGACACTTTCATGGTCGAAGATGCGGTGGAAGCCATTGGGTTCGGAA
GATTCCAGTGGAAGCTCTCTGTTCTCACCGGCTTGGCTTGGATGGCGGACGCCATGGAGATGATGATTCTGAGCATCCTGGCGCCTCAGCTGCACTGTGAGTGGCGACTCCCCAGCTGGCAGGTGGCG
CTGCTGACTTCGGTGGTCTTCATTGGTATGATGTCCAGTTCTACGCTCTGGGGAAACATCTCGGATCAGTATGGCAGGAAAACAGGGCTGAAGATCAGTGTGTTCTGGACCCTGTACTACGGCATCCT
CAGCGCTTTCGCGCCAGTGTATAGCTGGATCCTGGTGCTCCGAGGCCTCGTGGGCTTTGGGATTGGAGGGGTGCCTCAGTCGGTGACCCTGTACGCCGAGTTCCTCCCCATGAAGGCCAGAGCCAAGT
GCATTTTGCTGATTGAGGTTTTCTGGGCCATCGGGACCGTGTTCGAGGTGCTTCTGGCTGTGTTTGTGATGCCCAGCCTGGGCTGGCGCTGGCTGCTGCTGCTGTCGGCCGCTCCACTACTTGTCTTT
GCTGTTCTGTGTTTCTGGCTGCCAGAGAGTGCTAGGTACGATGTGCTGTCTGGGAACCAGGAAAAGGCGATTGCTACATTAAAGCGGATCGCAACAGAAAATGGAGCCCCCATGCCTCTGGGGAAGCT
CATCATCTTGAAACAGGAAGACCGAGGCAAAATGAGGGACCTTTTCACACCCCACTTTCGTTGGACAACTCTGCTGCTGTGGTTTATATGGTTCTCCAATGCCTTCTCTTATTACGGCTTGGTTCTGC
TCACCACAGAACTCTTCCAGGCCGGAGATGTTTGCAGCATCTCCAGCCGGAAGAAGGCGGTGGAAGCCAAATGCAGCCTGGCTTGTGAGTACCTCAGCAAAGAGGATTACATGGACCTGCTGTGGACC
ACCCTGTCTGAGTTCCCAGGTGTCCTTGTGACTCTGTGGGTCATCGACCGCCTGGGCCGCAAGAAGACCATGGCTCTGTGTTTCGTCATCTTTTCCCTCTGCAGCCTCCTGCTGTTCATCTGCATTGG
AAGAAATGTGCTAACCCTCTTACTGTTCATTGCAAGAGCGTTTATTTCTGGAGGCTTCCAAGCAGCCTACGTTTACACGCCTGAGGTGTATCCAACGGCGACGAGGGCGCTGGGCCTGGGCACCTGCA
GCGGCATGGCGAGAGTGGGCGCGCTCATCACTCCATTCATAGCTCAGGTGATGCTGGAATCTTCCGTGTACCTGACCCTGGCCGTCTACAGTGGCTGCTGCCTCCTTGCTGCCTTGGCCTCCTGCTTT
CTGCCCATCGAGACCAAAGGCCGAGCACTGCAGGAGTCCAGCCACCGGGAGTGGGGCCAGGAGATGGTTGGCCGAGGGACAAACAGCACAGGCGTCCCCAGGTCGAACTCTGGCTCTCAGGAGTAGTG
ACCCCTGGGAGTTGAGCTGGTCTTTGAGGCCGGAGCCTAGAAAGCTGGCAGAGCCCAGCTGGGCCACTAACGGTCACTGCCGACATCAAGAACTTTCCCCGAGTGGGCGAAGTGAACCGACAGGGTTT
TGTGTCTTCACTGTGTTTGGCCTATGTTCATCGAGGGTTGCCCGCCCCAGGAAGATGGGGCTGCATTCACTCCAGGGGGTTCTCCGTGGTGGGGGAAGGTTTGTACGTCGCCGTGGATCTGCATGGGG
GAAGCTGCTAGTGTGGGAGGGTCCCAGGGCGCTCAGGGCCAGCTGAGCAGATGTCACGTGGTTACCCAGTCATACCCTTGGAGAGCCACTGTCCAAAGATCTCCATAGATACAGTCTCAGCCCAGACC
CCTGTGACACCCGCCATTTTGTCCAGTAAGTTTCTCCTGCACCCTGGCCCCAGGATGTCTTTGGAATTAAGACAAGCTAATTAGTGTC

hide sequence

RefSeq Acc Id:

XM_008769316 ⟹ XP_008767538

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,215,301 - 48,251,185 (+)	NCBI
mRatBN7.2	12	42,554,542 - 42,589,262 (+)	NCBI
Rnor_6.0	12	48,315,795 - 48,351,974 (+)	NCBI

Sequence:

show sequence

AGCGTAGAGTTCTGTGGAGTCTCTAATGCCTTCATTGCCAGACGGATGGGCAAAGTGGGGAGTGAAGAGAAGCTGAGGAGCATGGAGAAGAGAGCTCTCGGGGCTGGAGGTCATTTCAGAGAGAAGGA
GAGTGAGATCAGGACACAGTTATGTCCCCACCTCTGTCAAGAGACCCAGGAATGTGGGTTTTAGTGTGAATTCTCCCTTAGGGCTGTCCCTTTAGATCAACTTGGAGCCCAAACAGAGCGACTTCCCC
GCAGAAGCCCCGAGTGTGACCCAGTCCTTACCCGTGTCACAAACAGAGCTTAAAGACCCAAGGAAGTGGCCCCAAGACACACCCTATGGTGACACTCTGGGACACTCGCAGCACTGAACCCACGAGGC
TAGGTCACCTCGTACTGTCTGTCTGTGTAAATACGTGTGCACTCTGAGGTCCCCACAGCTCGGAAACGGCCCAACAATGCATTCTGGGAAGTGTAAGGCAATGTGTGACCCTGTGTCACAACTGAACC
CAGGCCTAGAACAAAGGCACAGCTGTGCACGTGACAACTACGGCTGCCAGTTGTGTGCAGAGCCCAACTGTCCAACTGTCAACTGATCAGAACTCCCAATACCCCACCCCCAGCCCGACCAAATCCAG
CATAAATGCCAGGTCTACCTGCGCGGACCTCCAGACGGGTGGTGAAATTCCGCCGCACAGGAGAGAGCGCACGGTCAGAGGACGACGCGGCTTCCGGGGAACATGATGTTCAGATTGAGGGGGTCCGA
GTGGGCCTAGAAGCTGTCGAGCTGGATGATGGAGCAGCTGTCCCCAAGGAGTTTGCCAATCCCACTGATGACACTTTCATGGTCGAAGATGCGGTGGAAGCCATTGGGTTCGGAAGATTCCAGTGGAA
GCTCTCTGTTCTCACCGGCTTGGCTTGGATGGCGGACGCCATGGAGATGATGATTCTGAGCATCCTGGCGCCTCAGCTGCACTGTGAGTGGCGACTCCCCAGCTGGCAGGTGGCGCTGCTGACTTCGG
TGGTCTTCATTGGTATGATGTCCAGTTCTACGCTCTGGGGAAACATCTCGGATCAGTATGGCAGGAAAACAGGGCTGAAGATCAGTGTGTTCTGGACCCTGTACTACGGCATCCTCAGCGCTTTCGCG
CCAGTGTATAGCTGGATCCTGGTGCTCCGAGGCCTCGTGGGCTTTGGGATTGGAGGGGTGCCTCAGTCGGTGACCCTGTACGCCGAGTTCCTCCCCATGAAGGCCAGAGCCAAGTGCATTTTGCTGAT
TGAGGTTTTCTGGGCCATCGGGACCGTGTTCGAGGTGCTTCTGGCTGTGTTTGTGATGCCCAGCCTGGGCTGGCGCTGGCTGCTGCTGCTGTCGGCCGCTCCACTACTTGTCTTTGCTGTTCTGTGTT
TCTGGCTGCCAGAGAGTGCTAGGTACGATGTGCTGTCTGGGAACCAGGAAAAGGCGATTGCTACCTTAAAGCGGATCGCAACAGAAAATGGAGCCCCCATGCCTCTGGGGAAGCTCATCATCTCCAGA
CAGGAAGACCGAGGCAAAATGAGGGACCTTTTCACACCCCACTTTCGTTGGACAACTCTGCTGCTGTGGTTTATATGGTTCTCCAATGCCTTCTCTTATTACGGCTTGGTTCTGCTCACCACAGAACT
CTTCCAGGCCGGAGATGTTTGCAGCATCTCCAGCCGGAAGAAGGCGGTGGAAGCCAAATGCAGCCTGGCTTGTGAGTACCTCAGCAAAGAGGATTACATGGACCTGCTGTGGACCACCCTGTCTGAGT
TCCCAGGTGTCCTTGTGACTCTGTGGGTCATCGACCGCCTGGGCCGCAAGAAGACCATGGCTCTGTGTTTCGTCATCTTTTCCCTCTGCAGCCTCCTGCTGTTCATCTGCATTGGAAGAAATGTGCTA
ACCCTCTTACTGTTCATTGCAAGAGCGTTTATTTCTGGAGGCTTCCAAGCAGCCTACGTTTACACGCCTGAGGTGTATCCAACGGCGACGAGGGCGCTGGGCCTGGGCACCTGCAGCGGCATGGCGAG
AGTGGGCGCGCTCATCACTCCATTCATAGCTCAGGTGATGCTGGAATCTTCCGTGTACCTGACCCTGGCCGTCTACAGTGGCTGCTGCCTCCTTGCTGCCTTGGCCTCCTGCTTTCTGCCCATCGAGA
CCAAAGGCCGAGCACTGCAGGAGTCCAGCCACCGGGAGTGGGGCCAGGAGATGGTTGGCCGAGGGACAAACAGCACAGGCGTCCCCAGGTCGAACTCTGGCTCTCAGGAGTAGTGACCCCTGGGAGTT
GAGCTGGTCTTTGAGGCCGGAGCCTAGAAAGCTGGCAGAGCCCAGCTGGGCCACTAACGGTCACTGCCGACATCAAGAACTTTCCCCGAGTGGGCGAAGTGAACCGACAGGGTTTTGTGTCTTCACTG
TGTTTGGCCTATGTTCATCGAGGGTTGCCCGCCCCAGGAAGATGGGGCTGCATTCACTCCAGGGGGTTCTCCGTGGTGGGGGAAGGTTTGTACGTCGCCGTGGATCTGCATGGGGGAAGCTGCTAGTG
TGGGAGGGTCCCAGGGCGCTCAGGGCCAGCTGAGCAGATGTCACGTGGTTACCCAGTCATACCCTTGGAGAGCCACTGTCCAAAGATCTCCATAGATACAGTCTCAGCCCAGACCCCTGTGACACCCG
CCATTTTGTCCAGTAAGTTTCTCCTGCACCCTGGCCCCAGGATGTCTTTGGAATTAAGACAAGCTAATTAGTGTCCGACTAGAGCAGCTTTTCTGGAGCCTGAGACACCCCCCTCCCCGTTGCTTCCT
TGGTTGGGCCCCTCTAGATGTCTCTTCAGGGCCTGCCGGGTAGAAACTGACTGAAGAATGTGCTTGTGAATTTGAGCCAAGCATCATCCCCCATTGACCCCTTCTGGAGCCTCTGTCTCTGGCTGCAG
AGGGTCCTGTTATATTTCTGGGGAGAGCTAGGTACCCACCAGGCGACAGACCCAGAAAATTGTTAACCCATTCCCTGTCTTGGAAATCGGAGAGTGAGGCCTAGCAGAGGGGAGACTAAGGGCCAAAA
CCAAAGCCAGAGTCACCCCTGAAGCAGTTAGGGCCTTTCTGGGCCCTCTCTCTTACCCTCCCACCCCCACTCAGCCCCACTACATAGCGAGTCCCGGTTTCCTCAGGCTTCCAGACTCGTCTGTGTGT
AGGTGGCGGCATGAGCTTAGGGATCTCCATGGCAAAGCACCAAGTGCCGGCCCATTAAGTCTTGGGACGGAGAACCTGTTGCCCCTTCCGGCTCTGCCTCTGCTTTCTCTCCTGCTCCTCTGTCAAGG
GCAGGGCTGGTCCTACAGAGGCGGGTCCCGGGAGGATGTCCCGGCTCGAGGATCAGGAAAGCCCATCTCAGAGGGAGACAGGAGGCTGTTGTCTTGGCCTCAGGAGGAAGGTAGGTCTGAAGGCAGTC
CACGTGTACTCCCGGATTCCGGAACGCACGAGCCGCCCCTCTGAGATTCAGGAAAGAAGCACGCAGGGGGAGGAAGGAGATGGCCAGGCCCCAATCAAAGGCCAGAGGAAACTGGCCGCTTTGCTTGA
TGGACACCTCGCAAGGGAGCCAAATGTGCGTTGTGCGCTCATCTCTTATTAAAACGTTGGTGACGGACA

hide sequence

RefSeq Acc Id:

XM_063271030 ⟹ XP_063127100

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	48,220,406 - 48,251,185 (+)	NCBI


Protein RefSeqs	NP_599231	(Get FASTA)	NCBI Sequence Viewer
	XP_008767538	(Get FASTA)	NCBI Sequence Viewer
	XP_063127100	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC78627	(Get FASTA)	NCBI Sequence Viewer
	CAG34352	(Get FASTA)	NCBI Sequence Viewer
	EDM13953	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000000874
	ENSRNOP00000071220
GenBank Protein	Q9Z2I7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_599231 ⟸ NM_134404

- UniProtKB:

Q9Z2I7 (UniProtKB/Swiss-Prot), A6J214 (UniProtKB/TrEMBL), A0A8L2PZP2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEEDLFQLRQLPVVKFRRTGESARSEDDAASGEHDVQIEGVRVGLEAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSV
VFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCF
WLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIILKQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEF
PGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIET
KGRALQESSHREWGQEMVGRGTNSTGVPRSNSGSQE

hide sequence

RefSeq Acc Id:	XP_008767538 ⟸ XM_008769316
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JZX3 (UniProtKB/TrEMBL), A0A8L2PZP2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGLPARTSRRVVKFRRTGESARSEDDAASGEHDVQIEGVRVGLEAVELDDGAAVPKEFANPTD DTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQS VTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLW FIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTP EVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRALQESSHREWGQEMVGRGTNSTGVPRSNSGSQE hide sequence

Ensembl Acc Id:

ENSRNOP00000071220 ⟸ ENSRNOT00000084511

Ensembl Acc Id:

ENSRNOP00000000874 ⟸ ENSRNOT00000000874

RefSeq Acc Id:	XP_063127100 ⟸ XM_063271030
- Peptide Label:	isoform X2

Protein Domains

Major facilitator superfamily (MFS) profile

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9Z2I7-F1-model_v2	AlphaFold	Q9Z2I7	1-548	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13698717

Promoter ID:

EPDNEW_R9241

Type:

single initiation site

Name:

Svop_1

Description:

SV2 related protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	48,292,259 - 48,292,319	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-18936	BioCyc
Ensembl Genes	ENSRNOG00000000693	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000000874	ENTREZGENE
	ENSRNOT00000084511	ENTREZGENE
Gene3D-CATH	1.20.1250.20	UniProtKB/Swiss-Prot
InterPro	MFS	UniProtKB/Swiss-Prot
	MFS_dom	UniProtKB/Swiss-Prot
	MFS_sugar_transport-like	UniProtKB/Swiss-Prot
	MFS_trans_sf	UniProtKB/Swiss-Prot
	Orgcat_transp/SVOP	UniProtKB/Swiss-Prot
	SVOP-like_MFS_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:171442	UniProtKB/Swiss-Prot
NCBI Gene	171442	ENTREZGENE
PANTHER	3-(3-HYDROXY-PHENYL)PROPIONATE TRANSPORTER-RELATED	UniProtKB/Swiss-Prot
	SYNAPTIC VESICLE GLYCOPROTEIN 2	UniProtKB/Swiss-Prot
Pfam	MFS_1	UniProtKB/Swiss-Prot
	Sugar_tr	UniProtKB/Swiss-Prot
PhenoGen	Svop	PhenoGen
PROSITE	MFS	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000000693	RatGTEx
Superfamily-SCOP	SSF103473	UniProtKB/Swiss-Prot
UniProt	A0A0G2JZX3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2PZP2	ENTREZGENE, UniProtKB/TrEMBL
	A6J214	ENTREZGENE, UniProtKB/TrEMBL
	Q9Z2I7	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Svop	SV2 related protein	LOC102553250	synaptic vesicle 2-related protein-like	Data merged from RGD:7527440	737654	PROVISIONAL
2013-12-17	LOC102553250	synaptic vesicle 2-related protein-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-07-08	Svop	SV2 related protein			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Svop	SV2 related protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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