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Gene: Sfmbt1 (Scm-like with four mbt domains 1) Rattus norvegicus

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Symbol:

Sfmbt1

Name:

Scm-like with four mbt domains 1

RGD ID:

61999

Description:

Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of DNA-templated transcription and negative regulation of muscle organ development. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human SFMBT1 (Scm like with four mbt domains 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC680626; MGC93349; scm-like with four MBT domains protein 1; Scm-related gene containing four mbt domains; Sfmbt; similar to farnesyl diphosphate synthetase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SFMBT1 (Scm like with four mbt domains 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Sfmbt1 (Scm-like with four mbt domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sfmbt1 (Scm like with four mbt domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SFMBT1 (Scm like with four mbt domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SFMBT1 (Scm like with four mbt domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sfmbt1 (Scm like with four mbt domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SFMBT1 (Scm like with four mbt domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SFMBT1 (Scm like with four mbt domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sfmbt1 (Scm like with four mbt domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	UPP1 (uridine phosphorylase 1)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Sfmbt1 (Scm-like with four mbt domains 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SFMBT1 (Scm like with four mbt domains 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sfmbt1 (Scm like with four mbt domains 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sfmbt1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	5,896,686 - 6,016,311 (+)	NCBI		GRCr8
mRatBN7.2	16	5,889,046 - 6,009,860 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	5,890,782 - 6,006,605 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	5,903,220 - 6,017,256 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	7,048,672 - 7,162,718 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	5,901,842 - 6,023,496 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	6,775,648 - 6,896,155 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	6,779,281 - 6,895,299 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	6,705,856 - 6,825,699 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	6,124,155 - 6,241,008 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	6,185,489 - 6,241,002 (+)	NCBI
Celera	16	9,184,923 - 9,236,952 (-)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital disorder of glycosylation In (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

7,9-dihydro-1H-purine-2,6,8(3H)-trione (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

coumarin (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dioxygen (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

folic acid (ISO)

indometacin (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

panobinostat (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

propiconazole (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

valdecoxib (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

chromatin organization (IEA)

negative regulation of DNA-templated transcription (IBA,IEA,ISO,ISS)

negative regulation of muscle organ development (ISO,ISS)

regulation of DNA-templated transcription (IEA)

spermatogenesis (IEA)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO,ISS)

Molecular Function

chromatin binding (IBA)

histone binding (IBA,IEA,ISO,ISS)

protein binding (ISO)

transcription corepressor activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
7.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
8.	Cloning of a novel murine gene Sfmbt, Scm-related gene containing four mbt domains, structurally belonging to the Polycomb group of genes.	Usui H, etal., Gene 2000 May 2;248(1-2):127-35.

Additional References at PubMed

PMID:15489334	PMID:16751776	PMID:17599839	PMID:23349461	PMID:23592795

Genomics

Comparative Map Data

Sfmbt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	5,896,686 - 6,016,311 (+)	NCBI		GRCr8
mRatBN7.2	16	5,889,046 - 6,009,860 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	5,890,782 - 6,006,605 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	5,903,220 - 6,017,256 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	7,048,672 - 7,162,718 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	5,901,842 - 6,023,496 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	6,775,648 - 6,896,155 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	6,779,281 - 6,895,299 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	6,705,856 - 6,825,699 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	6,124,155 - 6,241,008 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	6,185,489 - 6,241,002 (+)	NCBI
Celera	16	9,184,923 - 9,236,952 (-)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

SFMBT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	52,903,572 - 53,046,073 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	52,903,572 - 53,046,750 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	52,937,588 - 53,080,089 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	52,913,667 - 53,055,110 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	52,913,667 - 53,055,110	NCBI
Celera	3	52,916,400 - 53,047,177 (-)	NCBI		Celera
Cytogenetic Map	3	p21.1	NCBI
HuRef	3	52,999,200 - 53,129,628 (-)	NCBI		HuRef
CHM1_1	3	52,889,772 - 53,031,734 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	52,936,457 - 53,078,977 (-)	NCBI		T2T-CHM13v2.0

Sfmbt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	30,436,806 - 30,544,678 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	30,436,806 - 30,544,678 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	30,714,849 - 30,822,721 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	30,714,849 - 30,822,721 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	31,528,035 - 31,635,907 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	29,595,009 - 29,646,972 (+)	NCBI		MGSCv36	mm8
Celera	14	26,972,255 - 27,079,725 (+)	NCBI		Celera
Cytogenetic Map	14	B	NCBI
cM Map	14	18.99	NCBI

Sfmbt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	2,856,054 - 2,915,517 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955430	2,850,149 - 3,014,859 (-)	NCBI	ChiLan1.0	ChiLan1.0

SFMBT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	52,899,440 - 53,045,144 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	52,904,212 - 53,049,915 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	52,841,693 - 52,991,613 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	54,071,144 - 54,215,061 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	54,071,144 - 54,138,538 (-)	Ensembl	panpan1.1		panPan2

SFMBT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	36,853,108 - 36,978,306 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	36,921,566 - 36,972,675 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	36,788,231 - 36,914,516 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	37,130,153 - 37,256,719 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	37,183,169 - 37,251,023 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	36,567,757 - 36,687,554 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	36,928,798 - 37,055,250 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	37,207,224 - 37,327,384 (+)	NCBI		UU_Cfam_GSD_1.0

Sfmbt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	170,511,523 - 170,644,846 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	3,654,555 - 3,781,577 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	3,650,096 - 3,784,191 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SFMBT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	35,025,769 - 35,180,042 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	35,020,627 - 35,181,074 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	38,213,183 - 38,314,039 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SFMBT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	14,285,362 - 14,439,624 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	14,290,494 - 14,438,192 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	152,456,991 - 152,611,732 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sfmbt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624822	4,160,661 - 4,328,058 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Sfmbt1
464 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	323
Count of miRNA genes:	202
Interacting mature miRNAs:	236
Transcripts:	ENSRNOT00000022865
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
1357403	Slep4	Serum leptin concentration QTL 4	3.91		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	9639137	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
737825	Alc13	Alcohol consumption QTL 13	4.5		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	16039848	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
61372	Bp40	Blood pressure QTL 40	2.2		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	16	4227730	17696785	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	2851709	15884239	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat

Markers in Region

RH130554

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	6,005,103 - 6,005,286 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	6,894,924 - 6,895,106	NCBI	Rnor6.0
Rnor_5.0	16	6,820,954 - 6,821,136	UniSTS	Rnor5.0
RGSC_v3.4	16	6,240,631 - 6,240,813	UniSTS	RGSC3.4
Celera	16	9,185,118 - 9,185,300	UniSTS
RH 3.4 Map	16	34.2	UniSTS
Cytogenetic Map	16	p16	UniSTS

AW531515

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	5,889,119 - 5,889,285 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	6,776,782 - 6,776,947	NCBI	Rnor6.0
Rnor_5.0	16	6,706,990 - 6,707,155	UniSTS	Rnor5.0
RGSC_v3.4	16	6,121,964 - 6,122,129	UniSTS	RGSC3.4
Celera	16	9,299,445 - 9,299,610	UniSTS
RH 3.4 Map	16	41.7	UniSTS
Cytogenetic Map	16	p16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB032164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC121615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ627111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022865 ⟹ ENSRNOP00000022865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	5,890,782 - 6,006,605 (+)	Ensembl
Rnor_6.0 Ensembl	16	6,779,281 - 6,895,299 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084713 ⟹ ENSRNOP00000074701

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	5,890,782 - 6,004,989 (+)	Ensembl
Rnor_6.0 Ensembl	16	6,806,170 - 6,895,007 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105144 ⟹ ENSRNOP00000082833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	5,955,991 - 6,006,605 (+)	Ensembl

RefSeq Acc Id:

NM_031647 ⟹ NP_113835

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,897,980 - 6,011,932 (+)	NCBI
mRatBN7.2	16	5,891,524 - 6,005,481 (+)	NCBI
Rnor_6.0	16	6,779,281 - 6,895,301 (+)	NCBI
Rnor_5.0	16	6,705,856 - 6,825,699 (+)	NCBI
RGSC_v3.4	16	6,124,155 - 6,241,008 (+)	RGD
Celera	16	9,184,923 - 9,236,952 (-)	RGD

Sequence:

show sequence

CAACCGGTGGCTCCGGCCTCCTAGGCGCTTCGCCTGGGGAGGCATCGCCGCCCGACCCCCTGCG
CGGACCTGGTTAGCGTCTCGAGGCCGCTGGGCAGGTCCTTGGGTGCCACTGGGTAGAAACGTGA
CACTTCAGGTCATCTGTGTATCGCAGCAGAGCCCTCAGCCTGCTCATCACTCGGGGAAGAGAAC
ACCCATGTGCTGTGGAGATGAACGGCGAGCAGCAGCTTGATGCAGATCTCGGGTCTGGTGTAGA
AGTAGAGGAGTTCAGCTGGGAAGATTATCTGGAAGAGACAGGCGCCACCACAGCTCCCTATGCA
TCGTTTAAACATGTGGATATATGTTTGCAAAGTGGGTTTGCCCCTGGGATGAAGCTGGAGGTGG
CTCTGAGGAAGGACCCTGAAACTTACTGGGTGGCCACCGTCATTACGGCCTGTGAGCAGCTGCT
CCTGCTCCGCTACGAAGGCTATGGGGAGGACCGGAAGGCAGACTTCTGGTGCGACATCAGGAGA
GCTGGCCTCTACCCCATCGGCTGGTGTCAGCAGAACAAGAAGACCCTCGAAGCTCCCGAAGGCA
TCAGAGATAAAGTGTCTGACTGGAGTGCATTCCTACAGCGGACCCTGACAGGAGCCTGTGGTCC
CCCTGTGGCTCTGCTAGAGGGCCTCCGTAACGGAAGGAATCCTTTAGATCTCATTGCTCCGGGA
TCCAGACTAGAATGCCAAGATTTTCGGGACTCTGTAAGCACGTGGATAGTTACTGTTGTGGAGA
ACATTGGAGGACGGTTGAAGCTGCAGTATGAAGGACTTGAAAGGCATGATGGTTTTGAACACTG
GCTATATTACTTAGATCCGTTTCTTCATCACATTGGCTGGGCTGCTCAGCAAGGATACGAACTC
CAGCCCCCATTAGCCATCAGGCATCTGAAAAATGAAGCTGACTGGCAAGAGATTTTGGCCAGAG
TGAAAGAGGAGGAGCCATTACCCTCTTACTTATTTAAGGATAAGCAAGTTATTAGAACCCATGA
GTTTTCTATAAACATGAAGTTGGAAGCTGTGGACCCATGGTCTCCTTTTGGGATTTCTCCTGCT
ACAATTGCTAAGGTTTTTGATGATAAGTACTTTCTAGTGGAAATAGATGACCTTCGACCAGAAG
ACCACGCAAGGCGGTCATTTGTGTGCCATGCTAACAGTCCTGGCATCTTTCCTGTGCAGTGGAG
TCTAAAGAATGGTTTACACATCAACCCTCCTCCAGGCTTCCGGAGCCAGGACTTTGACTGGGCC
GACTACCTCAAGCAGTGTGGTGCTGAAGCCGCTCCCCAGAAGTGCTTCCCGCAGTCAGTGTCTG
AGCACCAGTTCAAGGAGAACATGAAGCTGGAGGCAGTGAACCCTCTCTTCCCTGAAGAAGTGAG
CATAGCCACCGTGACTGCAGTGAGAGGCTCTTACCTGTGGCTCCAGCTGGAAGGTTCTAAGAAG
CCTGTACCCGAGTTTATTGTAAGTGTGGAGTCGATGAATATATTTCCTTTGGGCTGGTGTGAAA
CCAATGGCCATCCTCTCAGTACTCCTCGCCGGGCACGAGGGCATAAACTGAGGAAAATTGCAGT
GGTTCAACCCGAAAAACAAATACTGTCTTCAAGAACTGTCCATGAAGGCCTGAAGAATCAGCTG
AACTCCCCCCACTCAGTGATGATCAATGGAAAATACTGTTGTCCAAAGATATACTTCAACCACC
GTTGCTTCTCAGGGCCGTATCTTAATAAAGGAAGAATTGCTGAGCTGCCTCAGTGTGTAGGACC
TGGGAACTGTGTTCTGGTCCTTAGAGAGGTCCTTACTTTGCTTATCAACGCAGCATACAAGCCC
AGCCGTGTCCTCCGAGAGCTCCAGCTGGACAAAGACTCTGTGTGGCATGGGTGTGGAGAAGTCC
TGAAGGCCAAATATAAAGGGAAGAGCTACCGAGCTACTGTTGAGATAGTGAGAACAGCGGACCG
AGTGACGGAATTCTGCCGGCAAACATGTATCAAACTGGAATGCTGTCCCAACCTCTTTGGTCCA
CGCATGGTTCTGGACACATGCTCTGAGAACTGCTCTGTCCTGACGAAGACCAAATACACACACT
ATTATGGAAAGAAGAAAAATAAAAGAATTGGGAGACCACCCGGTGGGCATAGTAATTTATCTTG
TGCCCTGAAAAAAACCAGTAAGAGGAGAAAAAGGCGGAAAAATATTTTTGTTCATAAGAAGAAA
CGCTCTTCTGCATCTGTTGACAATACCCCAGTGGGCTCACCCCAGGGAAGCGGGGGTGAGGATG
AGGATGATGCCGATGACGGAGATGATGATTCGCTCACTGAGGGCAGTACATCTGAGCAACAGGA
CGAGTTACATGAAGAGTCTGAGGTGTCAGAAAAAAAATCATGCTCCCCTTCTCCCACCCAGAGT
GAGATGTCCACCCCACTGCCCCCAGACACACAGACGGATAAAAGAGAGGCCCAGACTTCCTCAC
TCTCAGATGGTGAAAACAAGCCTCCTTCACCAAAGGAAATAAGAATTGAAGTTGATGAAAGGCT
TCACCTGGACAGTAACCCACTGAAGTGGAGTGTGGCCGACGTCGTGCGGTTCATCAGGTCCACC
GACTGCGCTCCGTTGGCAAGAATATTCCTTGATCAGGAAATTGATGGGCAGGCCCTCTTGCTCC
TTACCCTCCCCACTGTTCAAGAGTGCATGGACTTAAAGTTGGGCCCCGCCATCAAGCTCTGCCA
TCACATAGAGAGAATCAAGTTTGCGTTCTATGAGCAGTTTGCCAACTGAGAAGGACAAGCAGAC
TGAGCTGGGTCTTTGAAGCACAGTGCAGCAAGCCCTTTGCCCTGCTCTACGGGCAGCTGCAGTC
GTCCTGGGCTATCGGCCTGCAAGTGCTGGCTTGCTATCTTTGCACTTTCAGGGAAGGAGGGAGC
AAAAAGAGCACAAAATGGCTCTCCTGCAATGGAATTGTGGACTTCTGTTTAGAAGATTCCAGTT
TAAAAGTCGTGAGGAAGAAAAAAAACCCTTAAAAGTCTGAGTGACCATTAACGGGACCTGAAAT
CAAAGAATGACTGTGACAGCTGGACCACACCAATTTGGTTATTTTCATTCTGTTCCTTCCCTCT
GTAGATTGAACTCTGTTCTCTGCTTTCTCTTTGTTGAAAAAAGAGGACATAGCTTTAAGTCGGC
ACTGGCTTGGGATGGTGCCTAAGGCACGGCAGTGCCCCACTGTTGTTGTGTTTTTAAGCTTTTC
TAAATTAAAGCAGTTCATTTTGGGGATACAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006252658 ⟹ XP_006252720

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,896,686 - 6,016,311 (+)	NCBI
mRatBN7.2	16	5,889,046 - 6,009,860 (+)	NCBI
Rnor_6.0	16	6,775,648 - 6,896,155 (+)	NCBI
Rnor_5.0	16	6,705,856 - 6,825,699 (+)	NCBI

Sequence:

show sequence

TATTTATTTACTTATTTGGGTTTTTTTTTTTTTTTGAGACTGGGTTTTACAGTGTAGTCTTGGC
AGTCTAGAAAACACTCTGTTGACCAGCGATCTGCCTACCTCTGACTCCTAAATACTGGGATTAA
AGGGATTTGTTTAAAAAAAACATGAGTGTTGGTGTCTGAGGCACTGTATTCCCTGGAGCTCAAG
TACAGGCAGTAGTGAACTCCATGTAGGCACTGGGAATTGAACCTGGGTCTCCTGCAAGGGCAGT
ATGCACGGGTAACTGCTGAGCTGTCTCCCCAGCCCTGAAACCAATGCTCTTCTCCCTTATATAA
TTATCCGAGAATGTGTATGGGCATGTAAACCCTATTTAAAAAACAAGTTTTCATGGTAGAAATC
GACCCTTGTGAGATGTGAAAACTATTTCAAAGAACCGACAGTTATAACCATACAGTGTTTGCTG
AAATCAAGGTCTGCTGGAGGAACTGGATGATTCTGAAACACACAAGCCAAAAGCAAAGGTAGCA
AAAAAGTAGGTTTTGCTAAGCAAAGACCAAGGGGAGAATTATTTAATAAATGGTGACTGCATAA
ACAATAACCATTGTAATAGAGGAGGAAAACTGGGTCTACATTTTTTATCTATTTACTCCAAAAC
AGCAGAAATAAAATTGGACAGGTGATCATAGAATAAAATATGCAAAGAAATTATCCAAGTAGAC
AGGTGCATGAAAGCTCATTTTGTTAGCATTTGACAATGAAAACATTCCACAATGAAAACAAAAA
CAAAAACATCCAGAGGACTAGAATGACAGGTGAACTGTAAACTAAAACAAAAGAGTATCAGTTA
GGGGCAACATTCCCATAATAACAAAAGTGAAAGAGTATCAGTTAGGGGCAACATTCCCATAATA
ACAAAAGTGAAAGAGTATCAGTTAGGGGCAACATTCCCATAATAACAAAAGTGAAAGAGTATCA
GTTAGGGGCAACATTCCCATAATAACAAAAGTGAAAGAGTATCAGTTAGGGGCAACATTCCCAT
AATAACAAAAGTGAAAGATCTTTTAAAGGTTTTTTTTTTTTTTTTTTTTTTACATGAGAAGAGA
TTCAACTCAAGACAATGGATATGAACAACAGGTTATGTACAGAAGGGGAAATACAGAGAGCAAA
TGGGGAAATTTTGAATGTTTAGTCATCCAAGAATTGCCAAATAAGGTAACTTCAAACCATCACT
AGGCATCATTAATGTCGGGGAGAAAAGATGTCACTCGGTGTTTAGAAATGTGCATTACATTCCT
TACACTGTTCCCTGCTGGTGAAAGAACTGGGGCGACAGGCCATTCACAGTTTCCCACCTGAAAA
CTTTCCCACTCCTAGAAACTCATCTCGACTGTGGACCGCCTGGATGTGTTAGCAGATAACTGCA
ATGAAATTAAACACCCCCCAAGTAGGAACCGTATATCTTAAAAAAAAGATCATGCAAACAAAAC
ATGTTAGTTAAAGTATCAAAAACAGAAAATGTGTGCTTGCAAGCACGTCAAGGTAAGTATCTAT
GTAGAAGTTTTTTTGGGGGGGGGACTCAAATTGTGTAGCAATCATTGAATATTCTTTTTACATT
CCTTTTTTCCTGTTACTTTGTCTTTTCAATGGTGCTTACACTTACAAAAAGAAAAATTATCTGG
AGTTTGTAATGTGCATATTTCCCAGGGTTGCCCCAAAACAAGAGAAAGATGCCTAATGTGAACA
CCCCAAGACATTGGTGTGTGTGTTTGTGTGGGGGCGCCTCCTCTTCTCTCAAAGACAGGAGCCT
TCCTTTAGTAGAAGCCATGACTGAGGGCATCTTAGGCTGGAGAGTCTGGCCTCATTGGCGCTCC
CGGGTCCCACTGGCGCTGGGATCTTCTTCTGCGGGAACTTTCCGGAGCAGGTGGGTGTGCATCC
TATTGACACCTGTGCGTGCTGAAGAAGGGAGGAGTCGCCAAAGGTAGCTGCCCGCGGGCACCTT
CGGATTCGAGGCTGATTCACAGCATTTTTGAGCTTCTCTTCTTCTCTTTGAAGTTCTTAGGTCA
CCCTTTGCAGCAAGAAGACGGATTTACAAAGCGCCTCTCCGAAGGCGTTCGAGTCCGACGCAGT
AGACGGGCACTAGAGTGCTTTGCTAGATGTCAAAAGACGTGAAGGATTCGCGACGTGGCCCGGC
CGGCGGGCGCAGCTCCTTCGGCAGCAGCACGCGCCCTTTAGGGACCTGCAGGGCTGCTGCCTCT
CTGCTAATACCATCTTGCTCGAGGTGGTCACGTGCGGGCTACAGTGGCGCGCTTCGCCCGGGAC
GGATGGATCAGGGACTTAGCCGGGTTCCGAGCCGCTCTGTCCAGAAGCCGAGGTCCTTGGGTGC
CACTGGGTAGAAACGTGACACTTCAGGTCATCTGTGTATCGCAGCAGAGCCCTCAGCCTGCTCA
TCACTCGGGGAAGAGAACACCCATGTGCTGTGGAGATGAACGGCGAGCAGCAGCTTGATGCAGA
TCTCGGGTCTGGTGTAGAAGTAGAGGAGTTCAGCTGGGAAGATTATCTGGAAGAGACAGGCGCC
ACCACAGCTCCCTATGCATCGTTTAAACATGTGGATATATGTTTGCAAAGTGGGTTTGCCCCTG
GGATGAAGCTGGAGGTGGCTCTGAGGAAGGACCCTGAAACTTACTGGGTGGCCACCGTCATTAC
GGCCTGTGAGCAGCTGCTCCTGCTCCGCTACGAAGGCTATGGGGAGGACCGGAAGGCAGACTTC
TGGTGCGACATCAGGAGAGCTGGCCTCTACCCCATCGGCTGGTGTCAGCAGAACAAGAAGACCC
TCGAAGCTCCCGAAGGCATCAGAGATAAAGTGTCTGACTGGAGTGCATTCCTACAGCGGACCCT
GACAGGAGCCTGTGGTCCCCCTGTGGCTCTGCTAGAGGGCCTCCGTAACGGAAGGAATCCTTTA
GATCTCATTGCTCCGGGATCCAGACTAGAATGCCAAGATTTTCGGGACTCTGTAAGCACGTGGA
TAGTTACTGTTGTGGAGAACATTGGAGGACGGTTGAAGCTGCAGTATGAAGGACTTGAAAGGCA
TGATGGTTTTGAACACTGGCTATATTACTTAGATCCGTTTCTTCATCACATTGGCTGGGCTGCT
CAGCAAGGATACGAACTCCAGCCCCCATTAGCCATCAGGCATCTGAAAAATGAAGCTGACTGGC
AAGAGATTTTGGCCAGAGTGAAAGAGGAGGAGCCATTACCCTCTTACTTATTTAAGGATAAGCA
AGTTATTAGAACCCATGAGTTTTCTATAAACATGAAGTTGGAAGCTGTGGACCCATGGTCTCCT
TTTGGGATTTCTCCTGCTACAATTGCTAAGGTTTTTGATGATAAGTACTTTCTAGTGGAAATAG
ATGACCTTCGACCAGAAGACCACGCAAGGCGGTCATTTGTGTGCCATGCTAACAGTCCTGGCAT
CTTTCCTGTGCAGTGGAGTCTAAAGAATGGTTTACACATCAACCCTCCTCCAGGCTTCCGGAGC
CAGGACTTTGACTGGGCCGACTACCTCAAGCAGTGTGGTGCTGAAGCCGCTCCCCAGAAGTGCT
TCCCGCAGTCAGTGTCTGAGCACCAGTTCAAGGAGAACATGAAGCTGGAGGCAGTGAACCCTCT
CTTCCCTGAAGAAGTGAGCATAGCCACCGTGACTGCAGTGAGAGGCTCTTACCTGTGGCTCCAG
CTGGAAGGTTCTAAGAAGCCTGTACCCGAGTTTATTGTAAGTGTGGAGTCGATGAATATATTTC
CTTTGGGCTGGTGTGAAACCAATGGCCATCCTCTCAGTACTCCTCGCCGGGCACGAGGGCATAA
ACTGAGGAAAATTGCAGTGGTTCAACCCGAAAAACAAATACTGTCTTCAAGAACTGTCCATGAA
GGCCTGAAGAATCAGCTGAACTCCCCCCACTCAGTGATGATCAATGGAAAATACTGTTGTCCAA
AGATATACTTCAACCACCGTTGCTTCTCAGGGCCGTATCTTAATAAAGGAAGAATTGCTGAGCT
GCCTCAGTGTGTAGGACCTGGGAACTGTGTTCTGGTCCTTAGAGAGGTCCTTACTTTGCTTATC
AACGCAGCATACAAGCCCAGCCGTGTCCTCCGAGAGCTCCAGCTGGACAAAGACTCTGTGTGGC
ATGGGTGTGGAGAAGTCCTGAAGGCCAAATATAAAGGGAAGAGCTACCGAGCTACTGTTGAGAT
AGTGAGAACAGCGGACCGAGTGACGGAATTCTGCCGGCAAACATGTATCAAACTGGAATGCTGT
CCCAACCTCTTTGGTCCACGCATGGTTCTGGACACATGCTCTGAGAACTGCTCTGTCCTGACGA
AGACCAAATACACACACTATTATGGAAAGAAGAAAAATAAAAGAATTGGGAGACCACCCGGTGG
GCATAGTAATTTATCTTGTGCCCTGAAAAAAACCAGTAAGAGGAGAAAAAGGCGGAAAAATATT
TTTGTTCATAAGAAGAAACGCTCTTCTGCATCTGTTGACAATACCCCAGTGGGCTCACCCCAGG
GAAGCGGGGGTGAGGATGAGGATGATGCCGATGACGGAGATGATGATTCGCTCACTGAGGGCAG
TACATCTGAGCAACAGGACGAGTTACATGAAGAGTCTGAGGTGTCAGAAAAAAAATCATGCTCC
CCTTCTCCCACCCAGAGTGAGATGTCCACCCCACTGCCCCCAGACACACAGACGGATAAAAGAG
AGGCCCAGACTTCCTCACTCTCAGATGGTGAAAACAAGCCTCCTTCACCAAAGGAAATAAGAAT
TGAAGTTGATGAAAGGCTTCACCTGGACAGTAACCCACTGAAGTGGAGTGTGGCCGACGTCGTG
CGGTTCATCAGGTCCACCGACTGCGCTCCGTTGGCAAGAATATTCCTTGATCAGGAAATTGATG
GGCAGGCCCTCTTGCTCCTTACCCTCCCCACTGTTCAAGAGTGCATGGACTTAAAGTTGGGCCC
CGCCATCAAGCTCTGCCATCACATAGAGAGAATCAAGTTTGCGTTCTATGAGCAGTTTGCCAAC
TGAGAAGGACAAGCAGACTGAGCTGGGTCTTTGAAGCACAGTGCAGCAAGCCCTTTGCCCTGCT
CTACGGGCAGCTGCAGTCGTCCTGGGCTATCGGCCTGCAAGTGCTGGCTTGCTATCTTTGCACT
TTCAGGGAAGGAGGGAGCAAAAAGAGCACAAAATGGCTCTCCTGCAATGGAATTGTGGACTTCT
GTTTAGAAGATTCCAGTTTAAAAGTCGTGAGGAAGAAAAAAAACCCTTAAAAGTCTGAGTGACC
ATTAACGGGACCTGAAATCAAAGAATGACTGTGACAGCTGGACCACACCAATTTGGTTATTTTC
ATTCTGTTCCTTCCCTCTGTAGATTGAACTCTGTTCTCTGCTTTCTCTTTGTTGAAAAAAGAGG
ACATAGCTTTAAGTCGGCACTGGCTTGGGATGGTGCCTAAGGCACGGCAGTGCCCCACTGTTGT
TGTGTTTTTAAGCTTTTCTAAATTAAAGCAGTTCATTTTGGGGATACTGAAGTGGCTCTAGGGT
TTTGAATGTATAGTCACACTTCGATCCATTTTAAAATCTGTCTTAGGAGTTCCTTTGTTTACTA
CCTCTGTTGATGACTGCGCTTACAGCCATGAGTGACATTTTTTGTACGATGCCATTTTTAAGCT
GAATGCTAAAACTATGACAGAAATTAGAGACGGCACTGCCTGCTTTTTTAAAGGTATCGTGTCA
GCACCTACACCCCAGCCCCTTCACCAGCTGTCCTAGGAATTCCACTCTTGTGTCCTCCATTGTC
ACCCAGTTTTGGCCACCGCTGTTAAGTGGCTTTACAAAGTATTTCAGTCTTCACTCCCCCCCCC
CCACCCGTTATTTCTGAAAGGTATTTAAGTGGCTTTGGTTTTATGCTTAGTTTTCTGTAGAGTT
GTTTAACTACCTCTGTTTAATTTCTGGAATTTCTACTCTCAGTGAAAATGAGTGTGTGTTCTTT
GGACCCACTGTCGAGCCCATTTTTCTGGTTTTCTGGGTATGTCCAAGTAGACACATGGCAGAGA
AATGTGTCTTTGGGGATGGCACAAAGTATGAAGTTTGTTAACAGTGTCCTCGGTTGTGAGTACT
GAGAGGTAGTTAAGAGTCTATGACCACGCTACCCGAAATGTCCCCATCTTCTCTCCTCTGGAAA
GCTAAGCAGGGCCTGGTTGGTACTTGGATGGGAGATGTGGTTAAGAAGTCTAGAAATCTCTGTC
TAGCCACGGTTATGCCTGTCTTCAGTTAAGCCAATTTAAATTGAATGTCATTACAGTCTGAAGA
TTCCCACTCAGTAGCTCATTCTTTTGAAGTTTTTCTTTTTCTTTTTAATTAAACTCAAGTTGAC
ATGAA

hide sequence

RefSeq Acc Id:

XM_008771006 ⟹ XP_008769228

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,897,276 - 6,016,311 (+)	NCBI
mRatBN7.2	16	5,918,129 - 6,009,860 (+)	NCBI
Rnor_6.0	16	6,806,169 - 6,896,155 (+)	NCBI

Sequence:

show sequence

GAAGATCTAGGACCAGCTCTTGAACTTCTAAGGATCAGCGTTTGCTCAGTATCCTCACTTTGGC
TTCAGTTGTCATCCAGACTTACTTGGCTGTGTCTGTCTCCTGCCCTCGTCCAGGGCCAGCTATT
TCAGAGAGAGCAGGTCTCCAGGAACAGTTCCCGGAGAACCACCTTTCTGTCTTGAGTCTCTGAA
ACTGACTACTCTTGTTACTCCATACGTCACCCTTGTTGGTTTCCAGTCTTATTTCGTGATCTTC
TTGGCGGCAGTCATTCCTGTTCCTATCCCGTGTGCACCCAGCAGAGCTTGTGCGTCCTTGGGTG
CCACTGGGTAGAAACGTGACACTTCAGGTCATCTGTGTATCGCAGCAGAGCCCTCAGCCTGCTC
ATCACTCGGGGAAGAGAACACCCATGTGCTGTGGAGATGAACGGCGAGCAGCAGCTTGATGCAG
ATCTCGGGTCTGGTGTAGAAGTAGAGGAGTTCAGCTGGGAAGATTATCTGGAAGAGACAGGCGC
CACCACAGCTCCCTATGCATCGTTTAAACATGTGGATATATGTTTGCAAAGTGGGTTTGCCCCT
GGGATGAAGCTGGAGGTGGCTCTGAGGAAGGACCCTGAAACTTACTGGGTGGCCACCGTCATTA
CGGCCTGTGAGCAGCTGCTCCTGCTCCGCTACGAAGGCTATGGGGAGGACCGGAAGGCAGACTT
CTGGTGCGACATCAGGAGAGCTGGCCTCTACCCCATCGGCTGGTGTCAGCAGAACAAGAAGACC
CTCGAAGCTCCCGAAGGCATCAGAGATAAAGTGTCTGACTGGAGTGCATTCCTACAGCGGACCC
TGACAGGAGCCTGTGGTCCCCCTGTGGCTCTGCTAGAGGGCCTCCGTAACGGAAGGAATCCTTT
AGATCTCATTGCTCCGGGATCCAGACTAGAATGCCAAGATTTTCGGGACTCTGTAAGCACGTGG
ATAGTTACTGTTGTGGAGAACATTGGAGGACGGTTGAAGCTGCAGTATGAAGGACTTGAAAGGC
ATGATGGTTTTGAACACTGGCTATATTACTTAGATCCGTTTCTTCATCACATTGGCTGGGCTGC
TCAGCAAGGATACGAACTCCAGCCCCCATTAGCCATCAGGCATCTGAAAAATGAAGCTGACTGG
CAAGAGATTTTGGCCAGAGTGAAAGAGGAGGAGCCATTACCCTCTTACTTATTTAAGGATAAGC
AAGTTATTAGAACCCATGAGTTTTCTATAAACATGAAGTTGGAAGCTGTGGACCCATGGTCTCC
TTTTGGGATTTCTCCTGCTACAATTGCTAAGGTTTTTGATGATAAGTACTTTCTAGTGGAAATA
GATGACCTTCGACCAGAAGACCACGCAAGGCGGTCATTTGTGTGCCATGCTAACAGTCCTGGCA
TCTTTCCTGTGCAGTGGAGTCTAAAGAATGGTTTACACATCAACCCTCCTCCAGGCTTCCGGAG
CCAGGACTTTGACTGGGCCGACTACCTCAAGCAGTGTGGTGCTGAAGCCGCTCCCCAGAAGTGC
TTCCCGCAGTCAGTGTCTGAGCACCAGTTCAAGGAGAACATGAAGCTGGAGGCAGTGAACCCTC
TCTTCCCTGAAGAAGTGAGCATAGCCACCGTGACTGCAGTGAGAGGCTCTTACCTGTGGCTCCA
GCTGGAAGGTTCTAAGAAGCCTGTACCCGAGTTTATTGTAAGTGTGGAGTCGATGAATATATTT
CCTTTGGGCTGGTGTGAAACCAATGGCCATCCTCTCAGTACTCCTCGCCGGGCACGAGGGCATA
AACTGAGGAAAATTGCAGTGGTTCAACCCGAAAAACAAATACTGTCTTCAAGAACTGTCCATGA
AGGCCTGAAGAATCAGCTGAACTCCCCCCACTCAGTGATGATCAATGGAAAATACTGTTGTCCA
AAGATATACTTCAACCACCGTTGCTTCTCAGGGCCGTATCTTAATAAAGGAAGAATTGCTGAGC
TGCCTCAGTGTGTAGGACCTGGGAACTGTGTTCTGGTCCTTAGAGAGGTCCTTACTTTGCTTAT
CAACGCAGCATACAAGCCCAGCCGTGTCCTCCGAGAGCTCCAGCTGGACAAAGACTCTGTGTGG
CATGGGTGTGGAGAAGTCCTGAAGGCCAAATATAAAGGGAAGAGCTACCGAGCTACTGTTGAGA
TAGTGAGAACAGCGGACCGAGTGACGGAATTCTGCCGGCAAACATGTATCAAACTGGAATGCTG
TCCCAACCTCTTTGGTCCACGCATGGTTCTGGACACATGCTCTGAGAACTGCTCTGTCCTGACG
AAGACCAAATACACACACTATTATGGAAAGAAGAAAAATAAAAGAATTGGGAGACCACCCGGTG
GGCATAGTAATTTATCTTGTGCCCTGAAAAAAACCAGTAAGAGGAGAAAAAGGCGGAAAAATAT
TTTTGTTCATAAGAAGAAACGCTCTTCTGCATCTGTTGACAATACCCCAGTGGGCTCACCCCAG
GGAAGCGGGGGTGAGGATGAGGATGATGCCGATGACGGAGATGATGATTCGCTCACTGAGGGCA
GTACATCTGAGCAACAGGACGAGTTACATGAAGAGTCTGAGGTGTCAGAAAAAAAATCATGCTC
CCCTTCTCCCACCCAGAGTGAGATGTCCACCCCACTGCCCCCAGACACACAGACGGATAAAAGA
GAGGCCCAGACTTCCTCACTCTCAGATGGTGAAAACAAGCCTCCTTCACCAAAGGAAATAAGAA
TTGAAGTTGATGAAAGGCTTCACCTGGACAGTAACCCACTGAAGTGGAGTGTGGCCGACGTCGT
GCGGTTCATCAGGTCCACCGACTGCGCTCCGTTGGCAAGAATATTCCTTGATCAGGAAATTGAT
GGGCAGGCCCTCTTGCTCCTTACCCTCCCCACTGTTCAAGAGTGCATGGACTTAAAGTTGGGCC
CCGCCATCAAGCTCTGCCATCACATAGAGAGAATCAAGTTTGCGTTCTATGAGCAGTTTGCCAA
CTGAGAAGGACAAGCAGACTGAGCTGGGTCTTTGAAGCACAGTGCAGCAAGCCCTTTGCCCTGC
TCTACGGGCAGCTGCAGTCGTCCTGGGCTATCGGCCTGCAAGTGCTGGCTTGCTATCTTTGCAC
TTTCAGGGAAGGAGGGAGCAAAAAGAGCACAAAATGGCTCTCCTGCAATGGAATTGTGGACTTC
TGTTTAGAAGATTCCAGTTTAAAAGTCGTGAGGAAGAAAAAAAACCCTTAAAAGTCTGAGTGAC
CATTAACGGGACCTGAAATCAAAGAATGACTGTGACAGCTGGACCACACCAATTTGGTTATTTT
CATTCTGTTCCTTCCCTCTGTAGATTGAACTCTGTTCTCTGCTTTCTCTTTGTTGAAAAAAGAG
GACATAGCTTTAAGTCGGCACTGGCTTGGGATGGTGCCTAAGGCACGGCAGTGCCCCACTGTTG
TTGTGTTTTTAAGCTTTTCTAAATTAAAGCAGTTCATTTTGGGGATACTGAAGTGGCTCTAGGG
TTTTGAATGTATAGTCACACTTCGATCCATTTTAAAATCTGTCTTAGGAGTTCCTTTGTTTACT
ACCTCTGTTGATGACTGCGCTTACAGCCATGAGTGACATTTTTTGTACGATGCCATTTTTAAGC
TGAATGCTAAAACTATGACAGAAATTAGAGACGGCACTGCCTGCTTTTTTAAAGGTATCGTGTC
AGCACCTACACCCCAGCCCCTTCACCAGCTGTCCTAGGAATTCCACTCTTGTGTCCTCCATTGT
CACCCAGTTTTGGCCACCGCTGTTAAGTGGCTTTACAAAGTATTTCAGTCTTCACTCCCCCCCC
CCCACCCGTTATTTCTGAAAGGTATTTAAGTGGCTTTGGTTTTATGCTTAGTTTTCTGTAGAGT
TGTTTAACTACCTCTGTTTAATTTCTGGAATTTCTACTCTCAGTGAAAATGAGTGTGTGTTCTT
TGGACCCACTGTCGAGCCCATTTTTCTGGTTTTCTGGGTATGTCCAAGTAGACACATGGCAGAG
AAATGTGTCTTTGGGGATGGCACAAAGTATGAAGTTTGTTAACAGTGTCCTCGGTTGTGAGTAC
TGAGAGGTAGTTAAGAGTCTATGACCACGCTACCCGAAATGTCCCCATCTTCTCTCCTCTGGAA
AGCTAAGCAGGGCCTGGTTGGTACTTGGATGGGAGATGTGGTTAAGAAGTCTAGAAATCTCTGT
CTAGCCACGGTTATGCCTGTCTTCAGTTAAGCCAATTTAAATTGAATGTCATTACAGTCTGAAG
ATTCCCACTCAGTAGCTCATTCTTTTGAAGTTTTTCTTTTTCTTTTTAATTAAACTCAAGTTGA
CATGAA

hide sequence

RefSeq Acc Id:

XM_039094800 ⟹ XP_038950728

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,897,794 - 6,016,311 (+)	NCBI
mRatBN7.2	16	5,891,213 - 6,009,860 (+)	NCBI

RefSeq Acc Id:

XM_039094801 ⟹ XP_038950729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,897,276 - 6,016,311 (+)	NCBI
mRatBN7.2	16	5,918,129 - 6,009,860 (+)	NCBI

RefSeq Acc Id:

XM_039094802 ⟹ XP_038950730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,897,794 - 6,016,311 (+)	NCBI
mRatBN7.2	16	5,891,213 - 6,009,860 (+)	NCBI

RefSeq Acc Id:

XM_063275675 ⟹ XP_063131745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,897,794 - 6,016,311 (+)	NCBI

RefSeq Acc Id:

XM_063275676 ⟹ XP_063131746

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,897,276 - 6,016,311 (+)	NCBI

RefSeq Acc Id:

XM_063275677 ⟹ XP_063131747

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,897,277 - 6,016,311 (+)	NCBI

RefSeq Acc Id:

XM_063275678 ⟹ XP_063131748

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,897,794 - 6,016,311 (+)	NCBI

RefSeq Acc Id:

XM_063275680 ⟹ XP_063131750

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,897,278 - 6,016,311 (+)	NCBI

RefSeq Acc Id:

XM_063275681 ⟹ XP_063131751

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,923,912 - 6,016,311 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_113835	(Get FASTA)	NCBI Sequence Viewer
	XP_006252720	(Get FASTA)	NCBI Sequence Viewer
	XP_008769228	(Get FASTA)	NCBI Sequence Viewer
	XP_038950728	(Get FASTA)	NCBI Sequence Viewer
	XP_038950729	(Get FASTA)	NCBI Sequence Viewer
	XP_038950730	(Get FASTA)	NCBI Sequence Viewer
	XP_063131745	(Get FASTA)	NCBI Sequence Viewer
	XP_063131746	(Get FASTA)	NCBI Sequence Viewer
	XP_063131747	(Get FASTA)	NCBI Sequence Viewer
	XP_063131748	(Get FASTA)	NCBI Sequence Viewer
	XP_063131750	(Get FASTA)	NCBI Sequence Viewer
	XP_063131751	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81770	(Get FASTA)	NCBI Sequence Viewer
	BAA96304	(Get FASTA)	NCBI Sequence Viewer
	EDL88983	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022865.4
	ENSRNOP00000074701.2
	ENSRNOP00000082833.1
	ENSRNOP00055029272
	ENSRNOP00060018789
	ENSRNOP00065019485
GenBank Protein	Q9JMD2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_113835 ⟸ NM_031647

- UniProtKB:

Q66HN3 (UniProtKB/Swiss-Prot), Q9JMD2 (UniProtKB/Swiss-Prot), A6KG26 (UniProtKB/TrEMBL), A0A8I5ZVZ3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNGEQQLDADLGSGVEVEEFSWEDYLEETGATTAPYASFKHVDICLQSGFAPGMKLEVALRKDP
ETYWVATVITACEQLLLLRYEGYGEDRKADFWCDIRRAGLYPIGWCQQNKKTLEAPEGIRDKVS
DWSAFLQRTLTGACGPPVALLEGLRNGRNPLDLIAPGSRLECQDFRDSVSTWIVTVVENIGGRL
KLQYEGLERHDGFEHWLYYLDPFLHHIGWAAQQGYELQPPLAIRHLKNEADWQEILARVKEEEP
LPSYLFKDKQVIRTHEFSINMKLEAVDPWSPFGISPATIAKVFDDKYFLVEIDDLRPEDHARRS
FVCHANSPGIFPVQWSLKNGLHINPPPGFRSQDFDWADYLKQCGAEAAPQKCFPQSVSEHQFKE
NMKLEAVNPLFPEEVSIATVTAVRGSYLWLQLEGSKKPVPEFIVSVESMNIFPLGWCETNGHPL
STPRRARGHKLRKIAVVQPEKQILSSRTVHEGLKNQLNSPHSVMINGKYCCPKIYFNHRCFSGP
YLNKGRIAELPQCVGPGNCVLVLREVLTLLINAAYKPSRVLRELQLDKDSVWHGCGEVLKAKYK
GKSYRATVEIVRTADRVTEFCRQTCIKLECCPNLFGPRMVLDTCSENCSVLTKTKYTHYYGKKK
NKRIGRPPGGHSNLSCALKKTSKRRKRRKNIFVHKKKRSSASVDNTPVGSPQGSGGEDEDDADD
GDDDSLTEGSTSEQQDELHEESEVSEKKSCSPSPTQSEMSTPLPPDTQTDKREAQTSSLSDGEN
KPPSPKEIRIEVDERLHLDSNPLKWSVADVVRFIRSTDCAPLARIFLDQEIDGQALLLLTLPTV
QECMDLKLGPAIKLCHHIERIKFAFYEQFAN

hide sequence

RefSeq Acc Id:	XP_006252720 ⟸ XM_006252658
- Peptide Label:	isoform X1
- UniProtKB:	Q66HN3 (UniProtKB/Swiss-Prot), Q9JMD2 (UniProtKB/Swiss-Prot), A6KG26 (UniProtKB/TrEMBL), A0A8I5ZVZ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNGEQQLDADLGSGVEVEEFSWEDYLEETGATTAPYASFKHVDICLQSGFAPGMKLEVALRKDP ETYWVATVITACEQLLLLRYEGYGEDRKADFWCDIRRAGLYPIGWCQQNKKTLEAPEGIRDKVS DWSAFLQRTLTGACGPPVALLEGLRNGRNPLDLIAPGSRLECQDFRDSVSTWIVTVVENIGGRL KLQYEGLERHDGFEHWLYYLDPFLHHIGWAAQQGYELQPPLAIRHLKNEADWQEILARVKEEEP LPSYLFKDKQVIRTHEFSINMKLEAVDPWSPFGISPATIAKVFDDKYFLVEIDDLRPEDHARRS FVCHANSPGIFPVQWSLKNGLHINPPPGFRSQDFDWADYLKQCGAEAAPQKCFPQSVSEHQFKE NMKLEAVNPLFPEEVSIATVTAVRGSYLWLQLEGSKKPVPEFIVSVESMNIFPLGWCETNGHPL STPRRARGHKLRKIAVVQPEKQILSSRTVHEGLKNQLNSPHSVMINGKYCCPKIYFNHRCFSGP YLNKGRIAELPQCVGPGNCVLVLREVLTLLINAAYKPSRVLRELQLDKDSVWHGCGEVLKAKYK GKSYRATVEIVRTADRVTEFCRQTCIKLECCPNLFGPRMVLDTCSENCSVLTKTKYTHYYGKKK NKRIGRPPGGHSNLSCALKKTSKRRKRRKNIFVHKKKRSSASVDNTPVGSPQGSGGEDEDDADD GDDDSLTEGSTSEQQDELHEESEVSEKKSCSPSPTQSEMSTPLPPDTQTDKREAQTSSLSDGEN KPPSPKEIRIEVDERLHLDSNPLKWSVADVVRFIRSTDCAPLARIFLDQEIDGQALLLLTLPTV QECMDLKLGPAIKLCHHIERIKFAFYEQFAN hide sequence

RefSeq Acc Id:	XP_008769228 ⟸ XM_008771006
- Peptide Label:	isoform X1
- UniProtKB:	Q66HN3 (UniProtKB/Swiss-Prot), Q9JMD2 (UniProtKB/Swiss-Prot), A6KG26 (UniProtKB/TrEMBL), A0A8I5ZVZ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNGEQQLDADLGSGVEVEEFSWEDYLEETGATTAPYASFKHVDICLQSGFAPGMKLEVALRKDP ETYWVATVITACEQLLLLRYEGYGEDRKADFWCDIRRAGLYPIGWCQQNKKTLEAPEGIRDKVS DWSAFLQRTLTGACGPPVALLEGLRNGRNPLDLIAPGSRLECQDFRDSVSTWIVTVVENIGGRL KLQYEGLERHDGFEHWLYYLDPFLHHIGWAAQQGYELQPPLAIRHLKNEADWQEILARVKEEEP LPSYLFKDKQVIRTHEFSINMKLEAVDPWSPFGISPATIAKVFDDKYFLVEIDDLRPEDHARRS FVCHANSPGIFPVQWSLKNGLHINPPPGFRSQDFDWADYLKQCGAEAAPQKCFPQSVSEHQFKE NMKLEAVNPLFPEEVSIATVTAVRGSYLWLQLEGSKKPVPEFIVSVESMNIFPLGWCETNGHPL STPRRARGHKLRKIAVVQPEKQILSSRTVHEGLKNQLNSPHSVMINGKYCCPKIYFNHRCFSGP YLNKGRIAELPQCVGPGNCVLVLREVLTLLINAAYKPSRVLRELQLDKDSVWHGCGEVLKAKYK GKSYRATVEIVRTADRVTEFCRQTCIKLECCPNLFGPRMVLDTCSENCSVLTKTKYTHYYGKKK NKRIGRPPGGHSNLSCALKKTSKRRKRRKNIFVHKKKRSSASVDNTPVGSPQGSGGEDEDDADD GDDDSLTEGSTSEQQDELHEESEVSEKKSCSPSPTQSEMSTPLPPDTQTDKREAQTSSLSDGEN KPPSPKEIRIEVDERLHLDSNPLKWSVADVVRFIRSTDCAPLARIFLDQEIDGQALLLLTLPTV QECMDLKLGPAIKLCHHIERIKFAFYEQFAN hide sequence

Ensembl Acc Id:

ENSRNOP00000074701 ⟸ ENSRNOT00000084713

Ensembl Acc Id:

ENSRNOP00000022865 ⟸ ENSRNOT00000022865

RefSeq Acc Id:	XP_038950728 ⟸ XM_039094800
- Peptide Label:	isoform X1
- UniProtKB:	Q9JMD2 (UniProtKB/Swiss-Prot), Q66HN3 (UniProtKB/Swiss-Prot), A6KG26 (UniProtKB/TrEMBL), A0A8I5ZVZ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950730 ⟸ XM_039094802
- Peptide Label:	isoform X1
- UniProtKB:	Q9JMD2 (UniProtKB/Swiss-Prot), Q66HN3 (UniProtKB/Swiss-Prot), A6KG26 (UniProtKB/TrEMBL), A0A8I5ZVZ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950729 ⟸ XM_039094801
- Peptide Label:	isoform X1
- UniProtKB:	Q9JMD2 (UniProtKB/Swiss-Prot), Q66HN3 (UniProtKB/Swiss-Prot), A6KG26 (UniProtKB/TrEMBL), A0A8I5ZVZ3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000082833 ⟸ ENSRNOT00000105144

RefSeq Acc Id:	XP_063131746 ⟸ XM_063275676
- Peptide Label:	isoform X1
- UniProtKB:	Q9JMD2 (UniProtKB/Swiss-Prot), Q66HN3 (UniProtKB/Swiss-Prot), A6KG26 (UniProtKB/TrEMBL), A0A8I5ZVZ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131747 ⟸ XM_063275677
- Peptide Label:	isoform X1
- UniProtKB:	Q9JMD2 (UniProtKB/Swiss-Prot), Q66HN3 (UniProtKB/Swiss-Prot), A6KG26 (UniProtKB/TrEMBL), A0A8I5ZVZ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131750 ⟸ XM_063275680
- Peptide Label:	isoform X1
- UniProtKB:	Q9JMD2 (UniProtKB/Swiss-Prot), Q66HN3 (UniProtKB/Swiss-Prot), A6KG26 (UniProtKB/TrEMBL), A0A8I5ZVZ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131748 ⟸ XM_063275678
- Peptide Label:	isoform X1
- UniProtKB:	Q9JMD2 (UniProtKB/Swiss-Prot), Q66HN3 (UniProtKB/Swiss-Prot), A6KG26 (UniProtKB/TrEMBL), A0A8I5ZVZ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131745 ⟸ XM_063275675
- Peptide Label:	isoform X1
- UniProtKB:	Q9JMD2 (UniProtKB/Swiss-Prot), Q66HN3 (UniProtKB/Swiss-Prot), A6KG26 (UniProtKB/TrEMBL), A0A8I5ZVZ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131751 ⟸ XM_063275681
- Peptide Label:	isoform X1
- UniProtKB:	Q9JMD2 (UniProtKB/Swiss-Prot), Q66HN3 (UniProtKB/Swiss-Prot), A6KG26 (UniProtKB/TrEMBL), A0A8I5ZVZ3 (UniProtKB/TrEMBL)

Protein Domains

SAM SLED

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JMD2-F1-model_v2	AlphaFold	Q9JMD2	1-863	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699911

Promoter ID:

EPDNEW_R10435

Type:

initiation region

Name:

Sfmbt1_1

Description:

Scm-like with four mbt domains 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	6,779,262 - 6,779,322	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:61999	AgrOrtholog
BioCyc Gene	G2FUF-12183	BioCyc
Ensembl Genes	ENSRNOG00000016645	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055021093	UniProtKB/Swiss-Prot
	ENSRNOG00060013815	UniProtKB/Swiss-Prot
	ENSRNOG00065015014	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000022865.6	UniProtKB/Swiss-Prot
	ENSRNOT00000084713.2	UniProtKB/TrEMBL
	ENSRNOT00000105144.1	UniProtKB/TrEMBL
	ENSRNOT00055036060	UniProtKB/Swiss-Prot
	ENSRNOT00060023637	UniProtKB/Swiss-Prot
	ENSRNOT00065024911	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.150.50	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.30.30.140	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.90.1150.190	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7132495	IMAGE-MGC_LOAD
InterPro	Mbt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MBT_SFMBT1_rpt2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MBT_SFMBT1_rpt3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PcG_chromatin_remod_factors	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAM/pointed_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Scm-like-4MBT1/2_SAM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SLED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SLED_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:58967	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:93349	IMAGE-MGC_LOAD
NCBI Gene	58967	ENTREZGENE
PANTHER	POLYCOMB GROUP PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SCM-LIKE WITH FOUR MBT DOMAINS PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	MBT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAM_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SLED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Sfmbt1	PhenoGen
PROSITE	MBT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016645	RatGTEx
	ENSRNOG00055021093	RatGTEx
	ENSRNOG00060013815	RatGTEx
	ENSRNOG00065015014	RatGTEx
SMART	MBT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF47769	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Tudor/PWWP/MBT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR	TC219843
UniProt	A0A8I5ZVZ3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UR87_RAT	UniProtKB/TrEMBL
	A6KG26	ENTREZGENE, UniProtKB/TrEMBL
	Q66HN3	ENTREZGENE
	Q9JMD2	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q66HN3	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-29	Sfmbt1	Scm-like with four mbt domains 1	LOC680626	similar to farnesyl diphosphate synthetase	Data merged from RGD:1589450	737654	PROVISIONAL
2006-11-19	LOC680626	similar to farnesyl diphosphate synthetase			Symbol and Name status set to provisional	70820	PROVISIONAL
2004-09-10	Sfmbt1	Scm-like with four mbt domains 1	Sfmbt	Scm-related gene containing four mbt domains	Symbol and Name updated	1299863	APPROVED
2002-06-10	Sfmbt	Scm-related gene containing four mbt domains			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains the SPM domain and mbt repeats	61748

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar