Tnp1 (transition protein 1) - Rat Genome Database

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Gene: Tnp1 (transition protein 1) Rattus norvegicus
Analyze
Symbol: Tnp1
Name: transition protein 1
RGD ID: 3884
Description: Predicted to enable DNA binding activity. Predicted to be involved in several processes, including nucleosome disassembly; regulation of gene expression; and spermatid nucleus differentiation. Predicted to act upstream of or within spermatogenesis. Located in male germ cell nucleus. Orthologous to human TNP1 (transition protein 1); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; allethrin; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: spermatid nuclear transition protein 1; STP-1; testis-specific basic protein; TP-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8982,043,669 - 82,044,278 (-)NCBIGRCr8
mRatBN7.2974,594,463 - 74,595,072 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl974,594,466 - 74,595,274 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx983,049,184 - 83,049,793 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0988,178,079 - 88,178,688 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0986,564,825 - 86,565,434 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0980,294,837 - 80,295,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl980,294,840 - 80,295,446 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0980,066,299 - 80,066,908 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4972,397,750 - 72,398,359 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1972,544,732 - 72,545,341 (-)NCBI
Celera972,188,091 - 72,188,700 (-)NCBICelera
Cytogenetic Map9q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tnp1RatNeurodevelopmental Disorders  ISOTNP1 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868

1 to 20 of 33 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tnp1Rat17alpha-ethynylestradiol multiple interactionsISOTnp1 (Mus musculus)6480464[Ibuprofen co-treated with hydroxyibuprofen co-treated with Diclofenac co-treated with Ethinyl Estradiol] results in decreased expression of TNP1 mRNACTDPMID:37844793
Tnp1Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:28712647
Tnp1Rat3,3',4,4'-tetrachlorobiphenyl affects expressionISOTNP1 (Homo sapiens)64804643 more ...CTDPMID:20638727
Tnp1Rataflatoxin B1 increases methylationISOTNP1 (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of TNP1 geneCTDPMID:27153756
Tnp1Ratallethrin multiple interactionsEXP 6480464[Allethrins co-treated with cyhalothrin co-treated with cypermethrin co-treated with decamethrin co-treated with fenvalerate] results in decreased expression of TNP1 mRNA and [cypermethrin co-treated with decamethrin co-treated with fenvalerate co-treated with cyhalothrin co-treated with Allethrins] results in decreased expression of TNP1 mRNACTDPMID:33051911 and PMID:33396045
Tnp1Ratammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of TNP1 mRNACTDPMID:16483693
Tnp1Ratbenzene-1,2,4-triol decreases expressionISOTNP1 (Homo sapiens)6480464hydroxyhydroquinone results in decreased expression of TNP1 mRNACTDPMID:39245080
Tnp1Ratbenzo[a]pyrene increases methylationISOTNP1 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of TNP1 promoterCTDPMID:27901495
Tnp1Ratbis(2-ethylhexyl) phthalate decreases expressionISOTnp1 (Mus musculus)6480464Diethylhexyl Phthalate results in decreased expression of TNP1 mRNACTDPMID:33162236
Tnp1Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of TNP1 mRNA and bisphenol A results in decreased expression of TNP1 proteinCTDPMID:23528252 and PMID:25181051
Tnp1Ratbisphenol A decreases expressionISOTnp1 (Mus musculus)6480464bisphenol A results in decreased expression of TNP1 proteinCTDPMID:36347119
Tnp1Ratcarbendazim increases expressionEXP 6480464carbendazim results in increased expression of TNP1 mRNACTDPMID:28576679
Tnp1RatCGP 52608 multiple interactionsISOTNP1 (Homo sapiens)6480464CGP 52608 promotes the reaction [RORA protein binds to TNP1 gene]CTDPMID:28238834
Tnp1Ratcyhalothrin multiple interactionsEXP 6480464[Allethrins co-treated with cyhalothrin co-treated with cypermethrin co-treated with decamethrin co-treated with fenvalerate] results in decreased expression of TNP1 mRNA and [cypermethrin co-treated with decamethrin co-treated with fenvalerate co-treated with cyhalothrin co-treated with Allethrins] results in decreased expression of TNP1 mRNACTDPMID:33051911 and PMID:33396045
Tnp1Ratcypermethrin multiple interactionsEXP 6480464[Allethrins co-treated with cyhalothrin co-treated with cypermethrin co-treated with decamethrin co-treated with fenvalerate] results in decreased expression of TNP1 mRNA and [cypermethrin co-treated with decamethrin co-treated with fenvalerate co-treated with cyhalothrin co-treated with Allethrins] results in decreased expression of TNP1 mRNACTDPMID:33051911 and PMID:33396045
Tnp1Ratdelta-tocotrienol multiple interactionsISOTnp1 (Mus musculus)6480464tocotrienol and delta inhibits the reaction [Lipopolysaccharides results in decreased expression of TNP1 mRNA]CTDPMID:22185406
Tnp1Ratdelta-tocotrienol decreases expressionISOTnp1 (Mus musculus)6480464tocotrienol and delta results in decreased expression of TNP1 mRNACTDPMID:22185406
Tnp1Ratdexamethasone decreases expressionISOTnp1 (Mus musculus)6480464Dexamethasone results in decreased expression of TNP1 mRNACTDPMID:22185406
Tnp1Ratdexamethasone multiple interactionsISOTnp1 (Mus musculus)6480464Dexamethasone inhibits the reaction [Lipopolysaccharides results in decreased expression of TNP1 mRNA]CTDPMID:22185406
Tnp1Ratdiclofenac multiple interactionsISOTnp1 (Mus musculus)6480464[Ibuprofen co-treated with hydroxyibuprofen co-treated with Diclofenac co-treated with Ethinyl Estradiol] results in decreased expression of TNP1 mRNACTDPMID:37844793

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Biological Process
1 to 20 of 40 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tnp1Ratcell differentiation involved_inIEAUniProtKB-KW:KW-02211600115GO_REF:0000043UniProtGO_REF:0000043
Tnp1Ratchromatin remodeling involved_inISSUniProtKB:P094301600115GO_REF:0000024UniProtGO_REF:0000024
Tnp1Ratchromatin remodeling involved_inIEAUniProtKB:P09430 and ensembl:ENSP000002369791600115GO_REF:0000107EnsemblGO_REF:0000107
Tnp1Ratchromatin remodeling involved_inIBAPANTHER:PTN000426028 and UniProtKB:P094301600115GO_REF:0000033GO_CentralGO_REF:0000033
Tnp1Ratchromatin remodeling involved_inISOTNP1 (Homo sapiens)1624291 PMID:12743712RGDPMID:12743712
Tnp1Ratflagellated sperm motility involved_inISOTNP1 (Homo sapiens)1624291 PMID:10781074RGDPMID:10781074
Tnp1Ratflagellated sperm motility involved_inIEAUniProtKB:P09430 and ensembl:ENSP000002369791600115GO_REF:0000107EnsemblGO_REF:0000107
Tnp1Ratflagellated sperm motility involved_inISSUniProtKB:P094301600115GO_REF:0000024UniProtGO_REF:0000024
Tnp1Ratheterochromatin formation involved_inISSUniProtKB:P094301600115GO_REF:0000024UniProtGO_REF:0000024
Tnp1Ratheterochromatin formation involved_inIEAUniProtKB:P09430 and ensembl:ENSP000002369791600115GO_REF:0000107EnsemblGO_REF:0000107
Tnp1Ratheterochromatin formation involved_inISOTNP1 (Homo sapiens)1624291 PMID:11315969RGDPMID:11315969
Tnp1Ratnegative regulation of DNA-templated transcription involved_inISSUniProtKB:P094301600115GO_REF:0000024UniProtGO_REF:0000024
Tnp1Ratnegative regulation of DNA-templated transcription involved_inIEAUniProtKB:P09430 and ensembl:ENSP000002369791600115GO_REF:0000107EnsemblGO_REF:0000107
Tnp1Ratnegative regulation of DNA-templated transcription involved_inISOTNP1 (Homo sapiens)1624291 PMID:12743712RGDPMID:12743712
Tnp1Ratnucleosome disassembly involved_inISSUniProtKB:P094301600115GO_REF:0000024UniProtGO_REF:0000024
Tnp1Ratnucleosome disassembly involved_inIEAUniProtKB:P09430 and ensembl:ENSP000002369791600115GO_REF:0000107EnsemblGO_REF:0000107
Tnp1Ratnucleosome disassembly involved_inISOTNP1 (Homo sapiens)1624291 PMID:10781074RGDPMID:10781074
Tnp1Ratpositive regulation of protein processing involved_inISSUniProtKB:P108561600115GO_REF:0000024UniProtGO_REF:0000024
Tnp1Ratpositive regulation of protein processing involved_inIEAUniProtKB:P10856 and ensembl:ENSMUSP000000273741600115GO_REF:0000107EnsemblGO_REF:0000107
Tnp1Ratpositive regulation of protein processing involved_inISOTnp1 (Mus musculus)1624291 PMID:28366643RGDPMID:28366643
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Cellular Component
1 to 19 of 19 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tnp1Ratchromosome located_inIEAUniProtKB-SubCell:SL-04681600115GO_REF:0000044UniProtGO_REF:0000044
Tnp1Ratchromosome located_inIEAUniProtKB-KW:KW-01581600115GO_REF:0000043UniProtGO_REF:0000043
Tnp1Ratmale germ cell nucleus  IDA 729972 RGD 
Tnp1Ratmale germ cell nucleus is_active_inIBAPANTHER:PTN000426028 and Tnp1 (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
Tnp1Ratnucleosome part_ofISSUniProtKB:P094301600115GO_REF:0000024UniProtGO_REF:0000024
Tnp1Ratnucleosome part_ofIEAUniProtKB:P09430 and ensembl:ENSP000002369791600115GO_REF:0000107EnsemblGO_REF:0000107
Tnp1Ratnucleosome part_ofISOTnp1 (Mus musculus)1624291 PMID:28366643RGDPMID:28366643
Tnp1Ratnucleosome part_ofIBAMGI:98784 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Tnp1Ratnucleosome part_ofIEAUniProtKB:P10856 and ensembl:ENSMUSP000000273741600115GO_REF:0000107EnsemblGO_REF:0000107
Tnp1Ratnucleosome part_ofIEAInterPro:IPR001319 and InterPro:IPR0200621600115GO_REF:0000002InterProGO_REF:0000002
Tnp1Ratnucleosome part_ofIEAUniProtKB-KW:KW-05441600115GO_REF:0000043UniProtGO_REF:0000043
Tnp1Ratnucleosome part_ofISOTNP1 (Homo sapiens)1624291 PMID:12743712RGDPMID:12743712
Tnp1Ratnucleosome part_ofISSUniProtKB:P108561600115GO_REF:0000024UniProtGO_REF:0000024
Tnp1Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Tnp1Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Tnp1Ratnucleus located_inISOTnp1 (Mus musculus)1624291 PMID:15163613 and PMID:17261847RGDPMID:15163613 and PMID:17261847
Tnp1Ratnucleus located_inIEAUniProtKB:P10856 and ensembl:ENSMUSP000000273741600115GO_REF:0000107EnsemblGO_REF:0000107
Tnp1Ratnucleus located_inIEAInterPro:IPR001319 and InterPro:IPR0200621600115GO_REF:0000002InterProGO_REF:0000002
Tnp1Ratnucleus located_inISOTNP1 (Sus scrofa)1624291 PMID:1627265RGDPMID:1627265
1 to 19 of 19 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tnp1RatDNA binding enablesISSUniProtKB:P094301600115GO_REF:0000024UniProtGO_REF:0000024
Tnp1RatDNA binding enablesIEAInterPro:IPR001319 and InterPro:IPR0200621600115GO_REF:0000002InterProGO_REF:0000002
Tnp1RatDNA binding enablesIBAPANTHER:PTN000426028 and UniProtKB:P094301600115GO_REF:0000033GO_CentralGO_REF:0000033
Tnp1RatDNA binding enablesIEAUniProtKB:P09430 and ensembl:ENSP000002369791600115GO_REF:0000107EnsemblGO_REF:0000107
Tnp1RatDNA binding enablesIEAUniProtKB-KW:KW-02381600115GO_REF:0000043UniProtGO_REF:0000043
Tnp1RatDNA binding enablesISOTNP1 (Homo sapiens)1624291 PMID:12743712RGDPMID:12743712
Tnp1Ratprotein binding enablesISOTNP1 (Homo sapiens)1624291UniProtKB:Q92997 more ...RGDPMID:25416956 more ...


1 to 9 of 9 rows
#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Isolation of a cDNA clone for transition protein 1 (TP1), a major chromosomal protein of mammalian spermatids. Heidaran MA and Kistler WS, Gene 1987;54(2-3):281-4.
4. Nucleotide sequence of the Stp-1 gene coding for rat spermatid nuclear transition protein 1 (TP1): homology with protamine P1 and assignment of the mouse Stp-1 gene to chromosome 1. Heidaran MA, etal., Gene 1989 Jan 30;75(1):39-46.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
1 to 9 of 9 rows
PMID:1112834   PMID:1627265   PMID:4829397   PMID:10781074   PMID:11315969   PMID:12573823   PMID:12743712   PMID:15083521   PMID:15163613   PMID:15189834   PMID:15489334   PMID:17261847  
PMID:19506090   PMID:28366643  



Tnp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8982,043,669 - 82,044,278 (-)NCBIGRCr8
mRatBN7.2974,594,463 - 74,595,072 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl974,594,466 - 74,595,274 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx983,049,184 - 83,049,793 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0988,178,079 - 88,178,688 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0986,564,825 - 86,565,434 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0980,294,837 - 80,295,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl980,294,840 - 80,295,446 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0980,066,299 - 80,066,908 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4972,397,750 - 72,398,359 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1972,544,732 - 72,545,341 (-)NCBI
Celera972,188,091 - 72,188,700 (-)NCBICelera
Cytogenetic Map9q33NCBI
TNP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382216,859,458 - 216,860,064 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2216,859,458 - 216,860,064 (-)EnsemblGRCh38hg38GRCh38
GRCh372217,724,181 - 217,724,787 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362217,432,426 - 217,433,027 (-)NCBINCBI36Build 36hg18NCBI36
Build 342217,549,689 - 217,550,288NCBI
Celera2211,492,069 - 211,492,670 (-)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2209,578,223 - 209,578,824 (-)NCBIHuRef
CHM1_12217,730,235 - 217,730,836 (-)NCBICHM1_1
T2T-CHM13v2.02217,341,898 - 217,342,504 (-)NCBIT2T-CHM13v2.0
Tnp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39173,054,233 - 73,055,058 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl173,054,233 - 73,055,068 (-)EnsemblGRCm39 Ensembl
GRCm38173,015,074 - 73,015,899 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl173,015,074 - 73,015,909 (-)EnsemblGRCm38mm10GRCm38
MGSCv37173,061,648 - 73,062,473 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36172,948,284 - 72,949,079 (-)NCBIMGSCv36mm8
Celera173,589,038 - 73,589,863 (-)NCBICelera
Cytogenetic Map1C3NCBI
cM Map136.94NCBI
Tnp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545316,387,527 - 16,388,890 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545316,387,897 - 16,388,513 (+)NCBIChiLan1.0ChiLan1.0
TNP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213119,489,569 - 119,490,175 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B119,504,535 - 119,505,141 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B104,122,748 - 104,123,349 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B222,723,606 - 222,724,212 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B222,723,606 - 222,724,212 (-)Ensemblpanpan1.1panPan2
TNP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13723,742,875 - 23,743,417 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3723,727,538 - 23,743,365 (-)EnsemblCanFam3.1canFam3CanFam3.1
Tnp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303172,120,406 - 172,121,032 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936586504,864 - 505,447 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936586504,864 - 505,447 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15119,037,496 - 119,038,105 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115119,037,492 - 119,038,099 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215131,800,371 - 131,801,028 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110102,703,116 - 102,703,747 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10102,703,325 - 102,703,691 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604096,709,921 - 96,711,971 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248238,269,758 - 8,270,134 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Tnp1
2 total Variants

Predicted Target Of
Summary Value
Count of predictions:16
Count of miRNA genes:16
Interacting mature miRNAs:16
Transcripts:ENSRNOT00000023769
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 28 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat

1 to 10 of 28 rows
PMC141152P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2974,594,689 - 74,595,055 (+)MAPPERmRatBN7.2
Rnor_6.0980,295,064 - 80,295,429NCBIRnor6.0
Rnor_5.0980,066,526 - 80,066,891UniSTSRnor5.0
RGSC_v3.4972,397,977 - 72,398,342UniSTSRGSC3.4
Celera972,188,318 - 72,188,683UniSTS
Cytogenetic Map9q33UniSTS
Tnp1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2974,594,689 - 74,595,055 (+)MAPPERmRatBN7.2
Rnor_6.0980,295,064 - 80,295,429NCBIRnor6.0
Rnor_5.0980,066,526 - 80,066,891UniSTSRnor5.0
RGSC_v3.4972,397,977 - 72,398,342UniSTSRGSC3.4
Celera972,188,318 - 72,188,683UniSTS
Cytogenetic Map9q33UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
1 8 7 24 27 31 14 13 14 2 58 27 17 10 37 17



Ensembl Acc Id: ENSRNOT00000023769   ⟹   ENSRNOP00000023769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl974,594,466 - 74,595,274 (-)Ensembl
Rnor_6.0 Ensembl980,294,840 - 80,295,446 (-)Ensembl
RefSeq Acc Id: NM_017056   ⟹   NP_058752
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8982,043,669 - 82,044,278 (-)NCBI
mRatBN7.2974,594,463 - 74,595,072 (-)NCBI
Rnor_6.0980,294,837 - 80,295,446 (-)NCBI
Rnor_5.0980,066,299 - 80,066,908 (-)NCBI
RGSC_v3.4972,397,750 - 72,398,359 (-)RGD
Celera972,188,091 - 72,188,700 (-)RGD
Sequence:
Protein RefSeqs NP_058752 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA42260 (Get FASTA)   NCBI Sequence Viewer  
  AAH78850 (Get FASTA)   NCBI Sequence Viewer  
  CAA30264 (Get FASTA)   NCBI Sequence Viewer  
  EDL75321 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000023769
GenBank Protein P02317 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_058752   ⟸   NM_017056
- UniProtKB: P02317 (UniProtKB/Swiss-Prot),   A6JVR3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023769   ⟸   ENSRNOT00000023769

Name Modeler Protein Id AA Range Protein Structure
AF-P02317-F1-model_v2 AlphaFold P02317 1-55 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696741
Promoter ID:EPDNEW_R7266
Type:multiple initiation site
Name:Tnp1_1
Description:transition protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0980,295,458 - 80,295,518EPDNEW


1 to 18 of 18 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-27187 BioCyc
Ensembl Genes ENSRNOG00000017611 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000023769 ENTREZGENE
IMAGE_CLONE IMAGE:7131725 IMAGE-MGC_LOAD
InterPro Nuclear_transition_prot1 UniProtKB/Swiss-Prot
  Nuclear_transition_prot1_CS UniProtKB/Swiss-Prot
KEGG Report rno:24839 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93498 IMAGE-MGC_LOAD
NCBI Gene 24839 ENTREZGENE
PANTHER PTHR17486 UniProtKB/Swiss-Prot
  SPERMATID NUCLEAR TRANSITION PROTEIN 1 UniProtKB/Swiss-Prot
Pfam TP1 UniProtKB/Swiss-Prot
PhenoGen Tnp1 PhenoGen
PROSITE TP1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000017611 RatGTEx
UniProt A0A8L2QC99_RAT UniProtKB/TrEMBL
  A6JVR3 ENTREZGENE, UniProtKB/TrEMBL
  P02317 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 18 of 18 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Tnp1  Transition protein 1      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_protein protein contains 54 aa residues 729972