TNP1 (transition protein 1) - Rat Genome Database

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Gene: TNP1 (transition protein 1) Pan paniscus
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Symbol: TNP1
Name: transition protein 1
RGD ID: 11862966
Description: ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); chromatin silencing (ortholog); flagellated sperm motility (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN male germ cell nucleus (ortholog); nucleosome (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: spermatid nuclear transition protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B222,723,606 - 222,724,212 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B222,723,606 - 222,724,212 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B104,122,748 - 104,123,349 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TNP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B222,723,606 - 222,724,212 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B222,723,606 - 222,724,212 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B104,122,748 - 104,123,349 (-)NCBIMhudiblu_PPA_v0panPan3
TNP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2216,859,458 - 216,860,064 (-)EnsemblGRCh38hg38GRCh38
GRCh382216,859,458 - 216,860,064 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372217,724,181 - 217,724,787 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362217,432,426 - 217,433,027 (-)NCBINCBI36hg18NCBI36
Build 342217,549,689 - 217,550,288NCBI
Celera2211,492,069 - 211,492,670 (-)NCBI
Cytogenetic Map2q35NCBI
HuRef2209,578,223 - 209,578,824 (-)NCBIHuRef
CHM1_12217,730,235 - 217,730,836 (-)NCBICHM1_1
Tnp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39173,054,233 - 73,055,058 (-)NCBIGRCm39mm39
GRCm39 Ensembl173,054,233 - 73,055,068 (-)Ensembl
GRCm38173,015,074 - 73,015,899 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl173,015,074 - 73,015,909 (-)EnsemblGRCm38mm10GRCm38
MGSCv37173,061,648 - 73,062,473 (-)NCBIGRCm37mm9NCBIm37
MGSCv36172,948,284 - 72,949,079 (-)NCBImm8
Celera173,589,038 - 73,589,863 (-)NCBICelera
Cytogenetic Map1C3NCBI
cM Map136.94NCBI
Tnp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2974,594,463 - 74,595,072 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl980,294,840 - 80,295,446 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0980,294,837 - 80,295,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0980,066,299 - 80,066,908 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4972,397,750 - 72,398,359 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1972,544,732 - 72,545,341 (-)NCBI
Celera972,188,091 - 72,188,700 (-)NCBICelera
Cytogenetic Map9q33NCBI
Tnp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545316,387,527 - 16,388,890 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545316,387,897 - 16,388,513 (+)NCBIChiLan1.0ChiLan1.0
TNP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13723,742,875 - 23,743,417 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3723,727,538 - 23,743,365 (-)EnsemblCanFam3.1canFam3CanFam3.1
Tnp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303172,120,406 - 172,121,032 (-)NCBI
SpeTri2.0NW_004936586504,864 - 505,447 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15119,037,496 - 119,038,105 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115119,037,492 - 119,038,099 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215131,800,371 - 131,801,028 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110102,703,116 - 102,703,747 (-)NCBI
ChlSab1.1 Ensembl10102,703,325 - 102,703,691 (-)Ensembl
Vero_WHO_p1.0NW_02366604096,709,921 - 96,711,971 (+)NCBI
Tnp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248238,269,758 - 8,270,134 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003818591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000029209   ⟹   ENSPPAP00000007136
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B222,723,606 - 222,724,212 (-)Ensembl
RefSeq Acc Id: XM_003818591   ⟹   XP_003818639
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12B222,723,606 - 222,724,212 (-)NCBI
Mhudiblu_PPA_v02B104,122,748 - 104,123,349 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003818639 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003818639   ⟸   XM_003818591
- Sequence:
RefSeq Acc Id: ENSPPAP00000007136   ⟸   ENSPPAT00000029209


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000026261 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000007136 ENTREZGENE
NCBI Gene TNP1 ENTREZGENE