Advanced Search (OLGA)

Gene: Pcdhga1 (protocadherin gamma subfamily A, 1) Rattus norvegicus

Subscribe to Updates

Analyze

Symbol:

Pcdhga1 (Ensembl: Pcdhgc3)

Name:

protocadherin gamma subfamily A, 1 (Ensembl:protocadherin gamma subfamily C, 3)

RGD ID:

1590761

Description:

Predicted to enable calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Orthologous to several human genes including PCDHGA7 (protocadherin gamma subfamily A, 7); INTERACTS WITH amphetamine; bisphenol A; copper atom.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

protocadherin gamma a1; protocadherin gamma-A1

RGD Orthologs

Human

Mouse

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PCDHGA1 (protocadherin gamma subfamily A, 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pcdhga1 (protocadherin gamma subfamily A, 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PCDHGA1 (protocadherin gamma subfamily A, 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pcdhga1 (protocadherin gamma subfamily A, 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch73-233f7.1	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	pcdh1g30 (protocadherin 1 gamma 30)	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Cad96Cb	Alliance	DIOPT (InParanoid\|OMA)
Xenopus tropicalis (tropical clawed frog):	cenpv	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder)
Xenopus tropicalis (tropical clawed frog):	prodh	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	29,738,639 - 29,919,095 (+)	NCBI		GRCr8
mRatBN7.2	18	29,487,404 - 29,667,865 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	29,493,954 - 29,667,868 (+)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	18	29,487,482 - 29,492,857 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	29,591,744 - 29,772,190 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	30,353,755 - 30,534,170 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	29,689,080 - 29,869,511 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	30,808,404 - 30,971,113 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	30,808,404 - 30,810,824 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	30,502,814 - 30,662,065 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	30,568,805 - 30,754,205 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	18	29,133,935 - 29,311,954 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pcdhga1	Rat	autosomal dominant intellectual developmental disorder 31		ISO	RGD:1353144	8554872	ClinVar Annotator: match by term: NEURODEVELOPMENTAL DISORDER WITH NEONATAL RESPIRATORY INSUFFICIENCY, HYPOTONIA, AND FEEDING DIFFICULTIES	ClinVar	PMID:28492532
Pcdhga1	Rat	familial adenomatous polyposis 1		ISO	RGD:1353144	8554872	ClinVar Annotator: match by term: Familial adenomatous polyposis 1	ClinVar	PMID:17963004\|PMID:18487285\|PMID:19279422\|PMID:19409520\|PMID:20685668\|PMID:21643010\|PMID:28492532
Pcdhga1	Rat	genetic disease		ISO	RGD:1353144	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar
Pcdhga1	Rat	Hereditary Neoplastic Syndromes		ISO	RGD:1353144	8554872	ClinVar Annotator: match by term: Hereditary cancer-predisposing syndrome	ClinVar	PMID:17963004\|PMID:18487285\|PMID:19279422\|PMID:19409520\|PMID:20685668\|PMID:21643010\|PMID:28492532
Pcdhga1	Rat	NEURODEVELOPMENTAL DISORDER WITH POOR GROWTH AND SKELETAL ANOMALIES		ISO	RGD:1353144	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder with poor growth and skeletal anomalies	ClinVar	PMID:25741868\|PMID:34244665
Pcdhga1	Rat	Neurodevelopmental Disorders		ISO	RGD:1353144	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pcdhga1	Rat	1,2-dimethylhydrazine	decreases expression	ISO	RGD:1623076	6480464	1,2-Dimethylhydrazine results in decreased expression of PCDHGA1 mRNA	CTD	PMID:22206623
Pcdhga1	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	RGD:1353144	6480464	bisphenol S affects the methylation of PCDHGA1 gene	CTD	PMID:31601247
Pcdhga1	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	RGD:1623076	6480464	bisphenol S affects the methylation of PCDHGA1 gene	CTD	PMID:31683443
Pcdhga1	Rat	aflatoxin B1	decreases methylation	ISO	RGD:1353144	6480464	Aflatoxin B1 results in decreased methylation of PCDHGA1 gene	CTD	PMID:27153756
Pcdhga1	Rat	amphetamine	decreases expression	EXP		6480464	Amphetamine results in decreased expression of PCDHGA1 mRNA	CTD	PMID:30779732
Pcdhga1	Rat	benzo[a]pyrene	increases mutagenesis	ISO	RGD:1353144	6480464	Benzo(a)pyrene results in increased mutagenesis of PCDHGA1 gene	CTD	PMID:25435355
Pcdhga1	Rat	benzo[a]pyrene	increases methylation	ISO	RGD:1623076	6480464	Benzo(a)pyrene results in increased methylation of PCDHGA1 intron	CTD	PMID:27901495
Pcdhga1	Rat	benzo[a]pyrene	increases expression	ISO	RGD:1623076	6480464	Benzo(a)pyrene results in increased expression of PCDHGA1 mRNA	CTD	PMID:32417428
Pcdhga1	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1353144	6480464	Benzo(a)pyrene affects the methylation of PCDHGA1 exon; Benzo(a)pyrene affects the methylation of PCDHGA1 promoter	CTD	PMID:27901495
Pcdhga1	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of PCDHGA1 mRNA	CTD	PMID:25181051
Pcdhga1	Rat	bisphenol A	multiple interactions	ISO	RGD:1353144	6480464	[bisphenol A co-treated with Fulvestrant] affects the methylation of PCDHGA1 gene	CTD	PMID:31601247
Pcdhga1	Rat	bisphenol A	affects methylation	ISO	RGD:1353144	6480464	bisphenol A affects the methylation of PCDHGA1 gene	CTD	PMID:31601247
Pcdhga1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of PCDHGA1 mRNA	CTD	PMID:30816183\|PMID:32528016\|PMID:34947998
Pcdhga1	Rat	bisphenol F	multiple interactions	ISO	RGD:1353144	6480464	[bisphenol F co-treated with Fulvestrant] results in decreased methylation of PCDHGA1 gene	CTD	PMID:31601247
Pcdhga1	Rat	cocaine	increases expression	ISO	RGD:1353144	6480464	Cocaine results in increased expression of PCDHGA1 mRNA	CTD	PMID:18000554
Pcdhga1	Rat	copper atom	increases expression	EXP		6480464	Copper deficiency results in increased expression of PCDHGA1 mRNA	CTD	PMID:26033743
Pcdhga1	Rat	copper(0)	increases expression	EXP		6480464	Copper deficiency results in increased expression of PCDHGA1 mRNA	CTD	PMID:26033743
Pcdhga1	Rat	doxorubicin	affects methylation	EXP		6480464	Doxorubicin affects the methylation of PCDHGA1 gene	CTD	PMID:28962528
Pcdhga1	Rat	doxorubicin	decreases expression	ISO	RGD:1353144	6480464	Doxorubicin results in decreased expression of PCDHGA1 mRNA	CTD	PMID:29803840
Pcdhga1	Rat	ethanol	increases expression	ISO	RGD:1623076	6480464	Ethanol results in increased expression of PCDHGA1 mRNA	CTD	PMID:30319688
Pcdhga1	Rat	fulvestrant	multiple interactions	ISO	RGD:1353144	6480464	[bisphenol A co-treated with Fulvestrant] affects the methylation of PCDHGA1 gene; [bisphenol F co-treated with more ...	CTD	PMID:31601247
Pcdhga1	Rat	fulvestrant	increases methylation	ISO	RGD:1353144	6480464	Fulvestrant results in increased methylation of PCDHGA1 gene	CTD	PMID:31601247
Pcdhga1	Rat	Licochalcone B	decreases expression	ISO	RGD:1353144	6480464	licochalcone B results in decreased expression of PCDHGA1 mRNA	CTD	PMID:33647349
Pcdhga1	Rat	manganese(II) chloride	increases expression	EXP		6480464	manganese chloride results in increased expression of PCDHGA1 mRNA	CTD	PMID:28801915
Pcdhga1	Rat	potassium dichromate	increases expression	ISO	RGD:1623076	6480464	Potassium Dichromate results in increased expression of PCDHGA1 mRNA	CTD	PMID:23608068
Pcdhga1	Rat	progesterone	decreases expression	ISO	RGD:1353144	6480464	Progesterone results in decreased expression of PCDHGA1 mRNA	CTD	PMID:18070364
Pcdhga1	Rat	S-nitrosoglutathione	increases expression	ISO	RGD:1353144	6480464	S-Nitrosoglutathione results in increased expression of PCDHGA1 mRNA	CTD	PMID:38825487
Pcdhga1	Rat	valproic acid	increases methylation	ISO	RGD:1353144	6480464	Valproic Acid results in increased methylation of PCDHGA1 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pcdhga1	Rat	cell adhesion	involved_in	IEA	UniProtKB-KW:KW-0130	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pcdhga1	Rat	cell adhesion	involved_in	IEA	InterPro:IPR020894	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Pcdhga1	Rat	cell adhesion	involved_in	IBA	MGI:106671\|MGI:1298369\|MGI:1338042\|MGI:1855700\|MGI:2136740\|MGI:2684924\|PANTHER:PTN001932250\|RGD:620504\|UniProtKB:A0A8J1ME87\|UniProtKB:Q9HBB8\|ZFIN:ZDB-GENE-000607-1\|ZFIN:ZDB-GENE-030131-4218	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Pcdhga1	Rat	homophilic cell adhesion via plasma membrane adhesion molecules	involved_in	IEA	InterPro:IPR002126	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pcdhga1	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pcdhga1	Rat	membrane	located_in	IEA	InterPro:IPR002126\|InterPro:IPR015919	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Pcdhga1	Rat	membrane	located_in	ISO	RGD:1623076	1624291	PMID:15347688	RGD	PMID:15347688
Pcdhga1	Rat	plasma membrane	located_in	IEA	UniProtKB-KW:KW-1003	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pcdhga1	Rat	plasma membrane	located_in	IEA	UniProtKB-SubCell:SL-0039	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Pcdhga1	Rat	plasma membrane	located_in	IEA	InterPro:IPR020894	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Pcdhga1	Rat	plasma membrane	is_active_in	IBA	MGI:106671\|MGI:1298369\|MGI:1338042\|MGI:1891428\|MGI:2136740\|MGI:2136752\|MGI:2157782\|MGI:2684924\|PANTHER:PTN001932250\|RGD:1306348\|RGD:69350\|UniProtKB:O60245\|UniProtKB:Q9HBB8\|WB:WBGene00000395\|ZFIN:ZDB-GENE-000607-1\|ZFIN:ZDB-GENE-030131-4218	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pcdhga1	Rat	calcium ion binding	enables	IEA	UniRule:UR000413450	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Pcdhga1	Rat	calcium ion binding	enables	IEA	InterPro:IPR002126\|InterPro:IPR015919	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Pcdhga1	Rat	protein binding	enables	ISO	RGD:1623076	1624291	PR:O88689\|PR:Q91Y13 PMID:15347688	RGD	PMID:15347688

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:14672974	PMID:15347688	PMID:15744052	PMID:17110050

Pcdhga1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	29,738,639 - 29,919,095 (+)	NCBI		GRCr8
mRatBN7.2	18	29,487,404 - 29,667,865 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	29,493,954 - 29,667,868 (+)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	18	29,487,482 - 29,492,857 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	29,591,744 - 29,772,190 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	30,353,755 - 30,534,170 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	29,689,080 - 29,869,511 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	30,808,404 - 30,971,113 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	30,808,404 - 30,810,824 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	30,502,814 - 30,662,065 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	30,568,805 - 30,754,205 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	18	29,133,935 - 29,311,954 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

PCDHGA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	141,330,514 - 141,512,975 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	141,330,514 - 141,512,975 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	140,710,081 - 140,892,542 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	140,690,436 - 140,872,730 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	140,690,435 - 140,692,907	NCBI
Celera	5	136,787,078 - 136,969,282 (+)	NCBI		Celera
Cytogenetic Map	5	q31.3	NCBI
HuRef	5	135,855,319 - 136,037,386 (+)	NCBI		HuRef
CHM1_1	5	140,143,455 - 140,325,823 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	141,855,819 - 142,038,959 (+)	NCBI		T2T-CHM13v2.0

Pcdhga1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	37,794,828 - 37,974,923 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	37,794,846 - 37,974,926 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	37,661,775 - 37,841,870 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	37,661,793 - 37,841,873 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	37,821,599 - 38,001,524 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	37,787,919 - 37,967,844 (+)	NCBI		MGSCv36	mm8
Celera	18	38,994,463 - 39,185,349 (+)	NCBI		Celera
Cytogenetic Map	18	B3	NCBI
cM Map	18	19.54	NCBI

Variants in Pcdhga1
1173 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	78
Count of miRNA genes:	74
Interacting mature miRNAs:	75
Transcripts:	ENSRNOT00000060475
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	24796977	79788953	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	18234564	31359530	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26548082	46969551	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	21372893	83213037	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26548082	46969551	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26548082	46969551	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	22066242	52293055	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26548082	46969551	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
2300157	Bmd66	Bone mineral density QTL 66	13.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	18	28964853	73964853	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26548082	46969551	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	18007599	63571040	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26548082	46969551	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26548082	46969551	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
2293704	Bss35	Bone structure and strength QTL 35	4.59	0.0002	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	18	28964853	73964853	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	18234564	31359530	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25570985	70570985	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19278901	83218561	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
2300177	Bmd65	Bone mineral density QTL 65	19.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	18	28964853	73964853	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat

D18Rat100

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	29,607,001 - 29,607,214 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	30,928,541 - 30,928,753	NCBI	Rnor6.0
Rnor_5.0	18	30,622,699 - 30,622,911	UniSTS	Rnor5.0
RGSC_v3.4	18	30,688,754 - 30,688,967	RGD	RGSC3.4
RGSC_v3.4	18	30,688,755 - 30,688,967	UniSTS	RGSC3.4
RGSC_v3.1	18	30,715,400 - 30,715,613	RGD
Celera	18	29,253,446 - 29,253,658	UniSTS
SHRSP x BN Map	18	13.7599	RGD
SHRSP x BN Map	18	13.7599	UniSTS
Cytogenetic Map	18	p11	UniSTS

D18Wox21

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	29,666,368 - 29,666,447 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	30,969,617 - 30,969,695	NCBI	Rnor6.0
Rnor_5.0	18	30,660,569 - 30,660,647	UniSTS	Rnor5.0
RGSC_v3.4	18	30,752,709 - 30,752,787	UniSTS	RGSC3.4
Celera	18	29,310,458 - 29,310,536	UniSTS
Cytogenetic Map	18	p11	UniSTS

BF403187

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	29,507,758 - 29,507,879 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	30,828,762 - 30,828,882	NCBI	Rnor6.0
Rnor_5.0	18	30,522,989 - 30,523,109	UniSTS	Rnor5.0
RGSC_v3.4	18	30,588,912 - 30,589,032	UniSTS	RGSC3.4
Celera	18	29,154,255 - 29,154,375	UniSTS
RH 3.4 Map	18	428.1	UniSTS
Cytogenetic Map	18	p11	UniSTS

RH129840

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	29,632,404 - 29,632,572 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	30,953,941 - 30,954,108	NCBI	Rnor6.0
Rnor_5.0	18	30,648,099 - 30,648,266	UniSTS	Rnor5.0
RGSC_v3.4	18	30,713,933 - 30,714,100	UniSTS	RGSC3.4
Celera	18	29,279,250 - 29,279,417	UniSTS
Cytogenetic Map	18	p11	UniSTS

BF398325

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	29,579,114 - 29,579,264 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	30,900,106 - 30,900,255	NCBI	Rnor6.0
Rnor_5.0	18	30,594,333 - 30,594,482	UniSTS	Rnor5.0
RGSC_v3.4	18	30,660,266 - 30,660,415	UniSTS	RGSC3.4
Celera	18	29,225,604 - 29,225,753	UniSTS
RH 3.4 Map	8	610.9	UniSTS
Cytogenetic Map	18	p11	UniSTS

RH138098

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	29,586,544 - 29,586,696 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	30,907,536 - 30,907,687	NCBI	Rnor6.0
Rnor_5.0	18	30,601,763 - 30,601,914	UniSTS	Rnor5.0
RGSC_v3.4	18	30,667,696 - 30,667,847	UniSTS	RGSC3.4
Celera	18	29,233,034 - 29,233,185	UniSTS
RH 3.4 Map	18	426.4	UniSTS
Cytogenetic Map	18	p11	UniSTS

BQ192313

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	29,492,435 - 29,492,593 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	30,813,439 - 30,813,596	NCBI	Rnor6.0
Rnor_5.0	18	30,507,666 - 30,507,823	UniSTS	Rnor5.0
RGSC_v3.4	18	30,573,588 - 30,573,745	UniSTS	RGSC3.4
Celera	18	29,138,967 - 29,139,124	UniSTS
RH 3.4 Map	18	425.28	UniSTS
Cytogenetic Map	18	p11	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	84	83	52	25	52	6	211	97	93	45	60	31


RefSeq Transcripts	NM_001037140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY574008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000060475 ⟹ ENSRNOP00000057219

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	29,487,482 - 29,492,857 (-)	Ensembl
Rnor_6.0 Ensembl	18	30,808,404 - 30,810,824 (+)	Ensembl

RefSeq Acc Id:

NM_001037140 ⟹ NP_001032217

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	29,738,639 - 29,919,095 (+)	NCBI
mRatBN7.2	18	29,487,404 - 29,667,865 (+)	NCBI
Rnor_6.0	18	30,808,404 - 30,971,113 (+)	NCBI
Rnor_5.0	18	30,502,814 - 30,662,065 (+)	NCBI
RGSC_v3.4	18	30,568,805 - 30,754,205 (+)	RGD
Celera	18	29,133,935 - 29,311,954 (+)	RGD

Sequence:

show sequence

ATGGCGATTCCAGAGAAGCTAACCGGTTGGAGCCTGCTGATGCTGCTGTGCCTTTCTCTGGAGCTACTGTTGGAAGCTGGGGCTGGAAACATCCGATACTCCGTGCCAGAAGAAACCGACAAAGGCTC
CTTCGTGGGCAGCATCGCCAAGGACCTGGGACTGGAAACCCGGGAGCTGGCGGAGCGCAGGATCCGCATCGTCTCCAGAGGTAGGTCGCAGCTTTTCTCCCTGAACCCGCGAAGCGGCAGCTTGGTCA
CCGCGGGCAGGATAGACCGGGAAGAGCTGTGCGCTCAGAGCGTGCCGTGTGTCGTGAGCTTTAACATCCTTATGGAGGATAAAGTAAAGCTTGTCCCTATCGAAGTAGAGATAATTGATATCAATGAC
AACACTCCCCAATTCCAGTTAGAAGAGCTAGAATTAAAAATGAGTGAAATAACGACCCCAGGTACCAGGATCCCTTTGCCTCTCGGGCAAGACCTGGATGTGGGTATAAATTCACTTCAGAGCTACCA
GCTAAGCGCCAACCCTCACTTCTTCCTGGATGTGCAACAGGGACCTGATGGACCACAACAGCCGGAGATGGTACTGCAGAGACCTCTAGACAGAGAAAAAGATGCTGTTCATTACCTGATCCTCACTG
CCTCTGATGGGGGCAACCCAATACATTCAGGGACTTTGCAAATTCATGTTCAGGTGGTAGATGTGAACGACAACCCACCAGCATTTACTCAGGCAGAGTATCACGTGAGAGTCCCTGAGAACGTTCCA
TTAGGCACTCGGCTTCTCAAGGTGAATGCCTCTGACCCGGATGAGGGAGCTAATGGCAGAGTAACCTACTCCTTTCACAATGTAGACCACAGCGTGGTCCGGAAATTTCAGTTGGATTCTTACACAGG
AGAACTATCGAATAAAGAACCACTAGACTTTGAAGAATACAAAGTTTATCCAATGGAAATTCAAGCTCAGGATGGTGCTGGACTCATGGCCAGAGCGAAGGTGCTGGTCACTGTTTTGGATGTTAATG
ATAATGCCCCAGAAATTGGAGTCACGTCTGTAACTACCACAATACCAGAAAACTTTCCTCCTGGGACCATAGTTGCTCTCATCAGTGTGCATGATCAAGACGCTGATGACAATGGTCACACCACTTGT
TCCATTCCTGGCAACCTACCCTTTAAACTGGAAAAGTTAGTGGACAATTATTACCGCTTAGTAACAGAAAGAACACTGGACAGAGAACATAGCTCTAGGTACAACATCACAATAACAGCAACAGATCA
GGGAACTCCACCCCTATCTACCCAGGCTCACATCTCACTGCTAGTGACAGATATCAATGACAACCCTCCAGTTTTCGAACAGGACTCCTATTCTGTCTACATCCCTGAAAACAACCCCAGAGGGGCTT
CCATCTTCTCAGTAAAGGCCCAGGATGCTGACCACAATGAGAATGCTCTAGTGACTTACGCCCTGGTGGAAGACACTATTCAGGGAGTACCTTTGTCTTCTTATTTCTCCATCAACTCTGACACTGGA
GTTGTCTATGCACTGCAATCCTTTGACTATGAGCAGTTTCGAGATTTGCAGCTAAGAGTGATGGCCCGTGATAGTGGGAACCCACAACTCAGCAGCAATGTATCTCTGAGTCTATTCATGATAGATCA
GAATGACAACGCCCCAGAGATCCTGTACCCTGTCCTCCCCACTGATGGCTCCACTGGTGTGGAGCTAGCACCTCGATCTGCCGAGCCCGGTTACCTGGTGACCAAGGTAGTAGCAGTAGACAAAGACT
CAGGACAGAACTCCTGGCTGTCCTACCGTCTGCTCAAAGCCAGCGAGCCAGGGCTCTTCTCGGTGGGGCTGCACACAGGTGAGGTACGCACAGCTCGGGCCCTGCTGGACAGAGATGCTCTCAAACAG
AGCCTGGTGGTGGCTGTGCAGGACCACGGCCAGCCTCCTCTGTCCACCACAGTCACATTTACTATAGCAGTGGCTGACAACATCCCTGACCTCCTGGCTGACCTGGGCAGCATTGGGACCCCTGCTGA
CCCCCAGGATTCAGATCTCACACTCTACCTGGTGGTGGCAGTGGCCGTAGTCTCCTGCATCTTCCTAGCCTTTGTAATAGTGCTCTTGGTGCTCAAGCTGCGACATTGGCACTCCTCACGCTTGCTCC
AGACTGCAGCAAATGGACTGACTGACCTGCCCACCTCCAACTTTGTAGGTGTTGATGGGGTACATGCATTTCTACAGACCTATTCCCATGAGATCTCACTCACTGCTGACTCTCGTAAGAGCCACTTG
ATCTTCCCGCAACCCAACTACGCAGACACACTCATCAGCCAAGAGAGCTGTGAGAAAAAAGAATTTCTGTCAGCACCACAGTCTCTGCTTGAAGATAAAGAGGAAATATTTTCTCAGCAAGCCCCGCC
CAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCGGATCCCAAAATGGGGATGAAACCGGCACCTGGCCCAACAACCAGTTCGATACAGAGATGCTGCAAGCCATGATCTTGGCCT
CTGCCAGTGAAGCCGCTGATGGGAGCTCCACTCTGGGAGGGGGCACTGGCACTATGGGTTTGAGCGCTCGATATGGACCCCAGTTTACCCTGCAGCACGTGCCTGACTACCGCCAGAACGTGTACATC
CCTGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAACGAGATGGCAAGGCTCCGGCAGGCGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAAGAGAAGAAGTAATATGGAGGCCAGGCCTTGAG
CCACAGGGCAGCCTCCCTCCCCAGCCAGTCCAGCTTGTCCTTACTTGTACCCAGGCCTCAGAATTTCAGGGCTCACCCCAGGATTCTGGTAGGAGCCACAGCCAGGCCATGCTCCCCGTTGGGAAACA
GAAACAAGTGCCCAAGCCAACACCCCCTCTTTGTACCCTAGGGGGGTTGAATATGCAAAGAGAGTTCTGCTGGGACCCCCTATCCAATCAGTGATTGTACCCACATAGGTAGCAGGGTTAGTGTGGAT
ACACACACACACACACACACACACACACACACACACACAAACACCATGCCACACTCCCCTAGTTACAGCTGAACTCCCCATCTTCCAACCCAGTCAGGCTCATTCATCTCCAGCCTCCCTCTCCCCAC
CCCACCCTTTCAGTCAACACCCTCTCTTTGAGCCAGGTAGTTGGGCTGTTGGGGTGACAGGTGAGCTAAGGGGGCTCCTAGTTCTGAACAGGTGGGAGAGTATTACAATCCTTTGGCCTCTCCTTCAG
TTCAGCTGTCCCCCAAAGCATGGTTTGGTACCAGTCTTCTCATTTCCTCCTAGAGCCTGAGACCAATGCTTAAGTTTTGGGGAACAGTCACCATGCCCCTGGTACTGATGATGCTTGCTGGATTTTTG
GGAAGGCATTTTGCTACTAAGCCTCTTTTCAATGCCTGGGGACTACCAGTCTTCTGTTCTCCATTGTTTGATGTTCCCACTGCATGCTGTGACTTCCTACTCCTCAAAGAAGAGACTCCTTTGCATGT
CTGGAGACAGTAGGGGGTGGTAAACTAAAGGGAAGCTGAGTGTATACTGCTGGGAGTGGGGGCAGTGGACAAAACAGCCTGTTAATAGGGTCTTGCAAGGGGCTCTGTACGTACCCAGGGTACTGGCT
CAATCCTCAAATTCTAGCCATAGACAAACATCAGGCCAGACCCCTCCCTCCTGGTTCAGCCTGGGCAGCTTGGGCTGAGCCACCAGGACCAATGGATTTAAGCTGACATTTCAGTCCAAGAAGACTTC
TAAGTGAGTTTAAGACCAGAGAGGAAAGAGGGGCCTCTGTGGGTGCTGGGTACTCCAGAGGTGCCCTTGGTGGGAGGGTCAGTGGTCCTAGCAGGAAGGGAGCCCAGCAAGGTCATTCTTGGACCCTG
GGTCTAGTCCGGTAGCTAGAACAAGGGACCAAGTGGCTATAAAGTCTCAGCCAATGATGAGGCTTTTCCCCTGGGCCTCTGGGCCCCTGTATTCCTCAAGCCCCTGGCCTCCACCTTACCAGGTGCCA
TTTCTCAGAAGGCCACTGCCCAGGCCCCCAGGCCGCCCCCTCGTGGCCACAGACCGGTTAAAGCCCCCCAGTGCCTCCTTGTGCATAGAACTTCCTCTGCCCGAGCCCTTACAGTAGTGTAGAAGCCC
CCTTCCTCCTCCCGCTGGTGTAGAATAGCCAATAGTATAGTGTGGTGTGCTTTTACGTGATGGCGAGTGGGCAGCGGGCGGTGGGCTGTGCGCAGCCGTCTGTCCTTTGAATCTCAATCTGCCTGCGC
GGCCAGTGCTGTGTTTTGTGCTGTGTCCACACGCTGCGGCGACCCCTCCCTGTACTGACTTCTCTATAAAAGCTTCTCTTCGCATAGTCACGTAGCTCCTGCCCATCCCCCTTCCGATATCTCTCGCA
AGTTTTATACTCTAATATTTATATGGCTTTTTTCTTCGAAAATTAAAAATAAAAAATGGTTTCTTCTG

hide sequence


Protein RefSeqs	NP_001032217	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAT77590	(Get FASTA)	NCBI Sequence Viewer
	EDL76365	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000081574.1
	ENSRNOP00000088474.1

RefSeq Acc Id:	NP_001032217 ⟸ NM_001037140
- Peptide Label:	precursor
- UniProtKB:	I6LBW6 (UniProtKB/TrEMBL), A6J383 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAIPEKLTGWSLLMLLCLSLELLLEAGAGNIRYSVPEETDKGSFVGSIAKDLGLETRELAERRIRIVSRGRSQLFSLNPRSGSLVTAGRIDREELCAQSVPCVVSFNILMEDKVKLVPIEVEIIDIND NTPQFQLEELELKMSEITTPGTRIPLPLGQDLDVGINSLQSYQLSANPHFFLDVQQGPDGPQQPEMVLQRPLDREKDAVHYLILTASDGGNPIHSGTLQIHVQVVDVNDNPPAFTQAEYHVRVPENVP LGTRLLKVNASDPDEGANGRVTYSFHNVDHSVVRKFQLDSYTGELSNKEPLDFEEYKVYPMEIQAQDGAGLMARAKVLVTVLDVNDNAPEIGVTSVTTTIPENFPPGTIVALISVHDQDADDNGHTTC SIPGNLPFKLEKLVDNYYRLVTERTLDREHSSRYNITITATDQGTPPLSTQAHISLLVTDINDNPPVFEQDSYSVYIPENNPRGASIFSVKAQDADHNENALVTYALVEDTIQGVPLSSYFSINSDTG VVYALQSFDYEQFRDLQLRVMARDSGNPQLSSNVSLSLFMIDQNDNAPEILYPVLPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNSWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQ SLVVAVQDHGQPPLSTTVTFTIAVADNIPDLLADLGSIGTPADPQDSDLTLYLVVAVAVVSCIFLAFVIVLLVLKLRHWHSSRLLQTAANGLTDLPTSNFVGVDGVHAFLQTYSHEISLTADSRKSHL IFPQPNYADTLISQESCEKKEFLSAPQSLLEDKEEIFSQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYI PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK hide sequence

Ensembl Acc Id:

ENSRNOP00000057219 ⟸ ENSRNOT00000060475

Protein Domains

Cadherin

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ACT6-F1-model_v2	AlphaFold	D4ACT6	1-807	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-7812	BioCyc
Ensembl Genes	ENSRNOG00000039463	Ensembl
	ENSRNOG00000063070	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000114228.1	UniProtKB/TrEMBL
	ENSRNOT00000117926.1	UniProtKB/TrEMBL
Gene3D-CATH	Cadherins	UniProtKB/TrEMBL
InterPro	Cadherin	UniProtKB/TrEMBL
	Cadherin-like	UniProtKB/TrEMBL
	Cadherin_C	UniProtKB/TrEMBL
	Cadherin_CBD	UniProtKB/TrEMBL
	Cadherin_CS	UniProtKB/TrEMBL
	Cadherin_N	UniProtKB/TrEMBL
	Protocadherin/Cadherin-CA	UniProtKB/TrEMBL
KEGG Report	rno:553129	UniProtKB/TrEMBL
NCBI Gene	553129	ENTREZGENE
PANTHER	CADHERIN-87A	UniProtKB/TrEMBL
	PROTOCADHERIN GAMMA-A6	UniProtKB/TrEMBL
	PROTOCADHERIN GAMMA-B3-RELATED	UniProtKB/TrEMBL
	PTHR24028:SF108	UniProtKB/TrEMBL
Pfam	Cadherin	UniProtKB/TrEMBL
	Cadherin_2	UniProtKB/TrEMBL
	Cadherin_C_2	UniProtKB/TrEMBL
	Cadherin_tail	UniProtKB/TrEMBL
PhenoGen	Pcdhga1	PhenoGen
PRINTS	CADHERIN	UniProtKB/TrEMBL
PROSITE	CADHERIN_1	UniProtKB/TrEMBL
	CADHERIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000039463	RatGTEx
	ENSRNOG00000063070	RatGTEx
RNAcentral	URS00022AEDA9	RNACentral
SMART	SM00112	UniProtKB/TrEMBL
Superfamily-SCOP	Cadherin	UniProtKB/TrEMBL
UniProt	A0A8I5ZRY5_RAT	UniProtKB/TrEMBL
	A0A8I6A862_RAT	UniProtKB/TrEMBL
	A6J383	ENTREZGENE, UniProtKB/TrEMBL
	I6LBW6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Pcdhga1	protocadherin gamma subfamily A, 1	Pcdhga1	protocadherin gamma a1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	Pcdhga1	protocadherin gamma a1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

Imported Disease Annotations - ClinVar