Zfp318 (zinc finger protein 318) - Rat Genome Database

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Gene: Zfp318 (zinc finger protein 318) Rattus norvegicus
Analyze
Symbol: Zfp318
Name: zinc finger protein 318
RGD ID: 1583221
Description: Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in negative regulation of DNA-templated transcription and positive regulation of DNA-templated transcription. Predicted to be located in cytosol and nucleus. Predicted to be active in nucleoplasm. Orthologous to human ZNF318 (zinc finger protein 318); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC685082; similar to zinc finger protein 318 isoform 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,060,899 - 22,100,174 (-)NCBIGRCr8
mRatBN7.2914,562,958 - 14,601,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,563,313 - 14,601,409 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0916,947,818 - 16,979,131 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,942,359 - 16,979,044 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0915,844,861 - 15,875,058 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.499,957,525 - 10,163,321 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera912,318,142 - 12,383,177 (-)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp318Ratinfantile Refsum disease  ISOZNF318 (Homo sapiens)8554872ClinVar Annotator: match by term: ADRENOLEUKODYSTROPHY and AUTOSOMAL NEONATALClinVarPMID:19877282 more ...
Zfp318RatZellweger syndrome  ISOZNF318 (Homo sapiens)8554872ClinVar Annotator: match by term: Peroxisome biogenesis disorders and Zellweger syndrome spectrumClinVarPMID:19877282 more ...

1 to 20 of 61 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp318Rat1,2-dichloroethane decreases expressionISOZfp318 (Mus musculus)6480464ethylene dichloride results in decreased expression of ZFP318 mRNACTDPMID:28960355
Zfp318Rat1,2-dimethylhydrazine increases expressionISOZfp318 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of ZFP318 mRNACTDPMID:22206623
Zfp318Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of ZFP318 mRNACTDPMID:32145629
Zfp318Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOZfp318 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of ZFP318 mRNACTDPMID:21570461 and PMID:24680724
Zfp318Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of ZFP318 mRNACTDPMID:33387578
Zfp318Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of ZFP318 mRNACTDPMID:34747641
Zfp318Rat4,4'-sulfonyldiphenol decreases expressionISOZfp318 (Mus musculus)6480464bisphenol S results in decreased expression of ZFP318 mRNACTDPMID:39298647
Zfp318Ratacrylamide decreases expressionISOZfp318 (Mus musculus)6480464Acrylamide results in decreased expression of ZFP318 mRNACTDPMID:30807115
Zfp318Rataflatoxin B1 increases expressionISOZfp318 (Mus musculus)6480464Aflatoxin B1 results in increased expression of ZFP318 mRNACTDPMID:19770486
Zfp318Rataflatoxin B1 decreases expressionEXP 6480464Aflatoxin B1 results in decreased expression of ZFP318 mRNACTDPMID:33354967
Zfp318Ratamphetamine decreases expressionEXP 6480464Amphetamine results in decreased expression of ZFP318 mRNACTDPMID:30779732
Zfp318Ratantirheumatic drug increases expressionISOZNF318 (Homo sapiens)6480464Antirheumatic Agents results in increased expression of ZNF318 mRNACTDPMID:24449571
Zfp318Ratarsane multiple interactionsISOZNF318 (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of ZNF318 mRNACTDPMID:39836092
Zfp318Ratarsenic atom multiple interactionsISOZNF318 (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of ZNF318 mRNACTDPMID:39836092
Zfp318Ratarsenite(3-) multiple interactionsISOZNF318 (Homo sapiens)6480464arsenite inhibits the reaction [G3BP1 protein binds to ZNF318 mRNA]CTDPMID:32406909
Zfp318Ratbenzo[a]pyrene affects methylationISOZNF318 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of ZNF318 3' UTRCTDPMID:27901495
Zfp318Ratbis(2-ethylhexyl) phthalate decreases expressionISOZfp318 (Mus musculus)6480464Diethylhexyl Phthalate results in decreased expression of ZFP318 mRNACTDPMID:33754040
Zfp318Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of ZNF318 mRNACTDPMID:25181051
Zfp318Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of ZFP318 mRNACTDPMID:32145629
Zfp318Ratbutan-1-ol multiple interactionsISOZNF318 (Homo sapiens)6480464[[Gasoline co-treated with 1-Butanol] results in increased abundance of [Particulate Matter co-treated with Polycyclic Aromatic Hydrocarbons]] which results in decreased expression of ZNF318 mRNACTDPMID:29432896

1 to 20 of 61 rows

Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp318Ratcytosol located_inISOZNF318 (Homo sapiens) and UniProtKB:Q5VUA4-11624291 RGDGO_REF:0000052
Zfp318Ratcytosol located_inIEAUniProtKB:Q5VUA4 and ensembl:ENSP000003549641600115GO_REF:0000107EnsemblGO_REF:0000107
Zfp318Ratnucleoplasm located_inISOZNF318 (Homo sapiens) and UniProtKB:Q5VUA4-11624291 RGDGO_REF:0000052
Zfp318Ratnucleoplasm located_inIEAUniProtKB:Q5VUA4 and ensembl:ENSP000003549641600115GO_REF:0000107EnsemblGO_REF:0000107
Zfp318Ratnucleoplasm is_active_inIBAPANTHER:PTN004478950 and UniProtKB:Q5VUA41600115GO_REF:0000033GO_CentralGO_REF:0000033
Zfp318Ratnucleus located_inISOZfp318 (Mus musculus)1624291 PMID:12589823 and PMID:16446156RGDPMID:12589823 and PMID:16446156
Zfp318Ratnucleus located_inIEAUniProtKB:Q99PP2 and ensembl:ENSMUSP000001091091600115GO_REF:0000107EnsemblGO_REF:0000107
Zfp318Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044

Molecular Function

  


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12589823   PMID:16446156  



Zfp318
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,060,899 - 22,100,174 (-)NCBIGRCr8
mRatBN7.2914,562,958 - 14,601,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,563,313 - 14,601,409 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0916,947,818 - 16,979,131 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,942,359 - 16,979,044 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0915,844,861 - 15,875,058 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.499,957,525 - 10,163,321 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera912,318,142 - 12,383,177 (-)NCBICelera
Cytogenetic Map9q12NCBI
ZNF318
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,336,070 - 43,369,647 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,307,134 - 43,369,647 (-)EnsemblGRCh38hg38GRCh38
GRCh37643,303,808 - 43,337,385 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,411,786 - 43,445,159 (-)NCBINCBI36Build 36hg18NCBI36
Build 34643,411,785 - 43,445,159NCBI
Celera644,855,540 - 44,888,913 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,022,600 - 43,055,973 (-)NCBIHuRef
CHM1_1643,306,727 - 43,340,098 (-)NCBICHM1_1
T2T-CHM13v2.0643,164,983 - 43,198,559 (-)NCBIT2T-CHM13v2.0
Zfp318
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,694,444 - 46,731,846 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,694,657 - 46,731,846 (+)EnsemblGRCm39 Ensembl
GRCm381746,383,515 - 46,420,920 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,383,731 - 46,420,920 (+)EnsemblGRCm38mm10GRCm38
MGSCv371746,520,715 - 46,557,869 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,849,929 - 45,884,109 (+)NCBIMGSCv36mm8
Celera1749,818,603 - 49,855,874 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
Znf318
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,229,069 - 9,259,021 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,221,417 - 9,259,021 (-)NCBIChiLan1.0ChiLan1.0
ZNF318
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2557,836,162 - 57,869,651 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,706,000 - 53,739,592 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0642,928,050 - 42,961,639 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,219,827 - 44,252,553 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,219,827 - 44,252,610 (-)Ensemblpanpan1.1panPan2
ZNF318
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,812,317 - 11,842,584 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,813,346 - 11,842,618 (-)EnsemblCanFam3.1canFam3CanFam3.1
Znf318
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,301,133 - 47,333,726 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647616,626,389 - 16,659,074 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF318
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,359,505 - 38,388,730 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,343,372 - 38,388,883 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2743,859,098 - 43,889,239 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF318
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,782,941 - 28,818,010 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,787,018 - 28,821,406 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604443,374,970 - 43,432,054 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf318
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,219,041 - 16,256,288 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,219,095 - 16,263,365 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Zfp318
215 total Variants

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:46
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000025335, ENSRNOT00000073191
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 18 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat

1 to 10 of 18 rows
RH133362  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8921,745,163 - 21,745,356 (+)Marker Load Pipeline
mRatBN7.2914,247,553 - 14,247,747 (+)MAPPERmRatBN7.2
Rnor_6.0916,558,157 - 16,558,349NCBIRnor6.0
Rnor_5.0915,464,772 - 15,464,964UniSTSRnor5.0
RGSC_v3.4910,119,974 - 10,120,166UniSTSRGSC3.4
Celera911,996,006 - 11,996,198UniSTS
Cytogenetic Map9q12UniSTS
UniSTS:143850  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,300,349 - 14,300,580 (+)MAPPERmRatBN7.2
mRatBN7.21339,620,792 - 39,620,946 (+)MAPPERmRatBN7.2
Rnor_6.01344,837,513 - 44,837,666NCBIRnor6.0
Rnor_6.0916,610,379 - 16,610,609NCBIRnor6.0
Rnor_5.01349,922,685 - 49,922,838UniSTSRnor5.0
Rnor_5.0915,516,994 - 15,517,224UniSTSRnor5.0
RGSC_v3.41340,828,931 - 40,829,084UniSTSRGSC3.4
RGSC_v3.4910,053,825 - 10,054,055UniSTSRGSC3.4
Celera912,048,639 - 12,048,870UniSTS
Celera1339,994,958 - 39,995,111UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map13q12UniSTS
RH127795  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,350,702 - 14,350,904 (+)MAPPERmRatBN7.2
Rnor_6.0916,661,091 - 16,661,292NCBIRnor6.0
Rnor_5.0915,567,706 - 15,567,907UniSTSRnor5.0
RGSC_v3.4910,002,362 - 10,002,563UniSTSRGSC3.4
Celera912,098,500 - 12,098,701UniSTS
RH 3.4 Map958.3UniSTS
Cytogenetic Map9q12UniSTS
RH127839  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,300,319 - 14,300,530 (+)MAPPERmRatBN7.2
mRatBN7.21092,232,586 - 92,232,928 (+)MAPPERmRatBN7.2
Rnor_6.01095,502,312 - 95,502,653NCBIRnor6.0
Rnor_6.0916,610,349 - 16,610,559NCBIRnor6.0
Rnor_5.01095,237,195 - 95,237,536UniSTSRnor5.0
Rnor_5.0915,516,964 - 15,517,174UniSTSRnor5.0
RGSC_v3.41096,661,306 - 96,661,647UniSTSRGSC3.4
RGSC_v3.4910,053,875 - 10,054,085UniSTSRGSC3.4
Celera912,048,609 - 12,048,820UniSTS
Celera1090,898,167 - 90,898,508UniSTS
RH 3.4 Map953.1UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map10q32.1UniSTS
RH128497  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8921,831,711 - 21,832,186 (+)Marker Load Pipeline
mRatBN7.2914,334,110 - 14,334,585 (+)MAPPERmRatBN7.2
Rnor_6.0916,644,499 - 16,644,973NCBIRnor6.0
Rnor_5.0915,551,114 - 15,551,588UniSTSRnor5.0
RGSC_v3.4910,018,681 - 10,019,155UniSTSRGSC3.4
Celera912,081,965 - 12,082,439UniSTS
RH 3.4 Map960.4UniSTS
Cytogenetic Map9q12UniSTS
RH129717  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,300,100 - 14,300,315 (+)MAPPERmRatBN7.2
Rnor_6.0916,610,130 - 16,610,344NCBIRnor6.0
Rnor_5.0915,516,745 - 15,516,959UniSTSRnor5.0
RGSC_v3.4910,054,090 - 10,054,304UniSTSRGSC3.4
Celera912,048,390 - 12,048,604UniSTS
RH 3.4 Map955.0UniSTS
Cytogenetic Map9q12UniSTS
RH132300  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,371,237 - 14,371,431 (+)MAPPERmRatBN7.2
Rnor_6.0916,681,627 - 16,681,820NCBIRnor6.0
Rnor_5.0915,588,242 - 15,588,435UniSTSRnor5.0
RGSC_v3.499,981,536 - 9,981,729UniSTSRGSC3.4
Celera912,119,008 - 12,119,201UniSTS
RH 3.4 Map955.0UniSTS
Cytogenetic Map9q12UniSTS
RH132550  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,311,110 - 14,311,303 (+)MAPPERmRatBN7.2
Rnor_6.0916,621,140 - 16,621,332NCBIRnor6.0
Rnor_5.0915,527,755 - 15,527,947UniSTSRnor5.0
RGSC_v3.4910,043,290 - 10,043,482UniSTSRGSC3.4
Celera912,059,404 - 12,059,596UniSTS
RH 3.4 Map956.3UniSTS
Cytogenetic Map9q12UniSTS
RH144000  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8921,793,018 - 21,793,345 (+)Marker Load Pipeline
mRatBN7.2914,295,417 - 14,295,744 (-)MAPPERmRatBN7.2
mRatBN7.2914,295,417 - 14,295,744 (+)MAPPERmRatBN7.2
Rnor_6.0916,605,447 - 16,605,773NCBIRnor6.0
Rnor_6.09605,596 - 605,922NCBIRnor6.0
Rnor_5.09589,873 - 590,199UniSTSRnor5.0
Rnor_5.0915,512,062 - 15,512,388UniSTSRnor5.0
RGSC_v3.4910,058,661 - 10,058,987UniSTSRGSC3.4
Celera912,043,707 - 12,044,033UniSTS
Cytogenetic Map9q12UniSTS
RH135276  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,228,803 - 14,229,003 (+)MAPPERmRatBN7.2
Rnor_6.0916,539,041 - 16,539,240NCBIRnor6.0
Rnor_5.0915,445,656 - 15,445,855UniSTSRnor5.0
RGSC_v3.4910,101,015 - 10,101,214UniSTSRGSC3.4
Celera911,977,151 - 11,977,350UniSTS
RH 3.4 Map955.4UniSTS
Cytogenetic Map9q12UniSTS
RH137531  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,319,208 - 14,319,331 (+)MAPPERmRatBN7.2
Rnor_6.0916,629,598 - 16,629,720NCBIRnor6.0
Rnor_6.0916,346,636 - 16,346,758NCBIRnor6.0
Rnor_5.0915,262,343 - 15,262,465UniSTSRnor5.0
Rnor_5.0915,536,213 - 15,536,335UniSTSRnor5.0
RGSC_v3.4910,033,934 - 10,034,056UniSTSRGSC3.4
Celera912,067,077 - 12,067,199UniSTS
Cytogenetic Map9q12UniSTS
RH138719  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,598,156 - 14,598,300 (+)MAPPERmRatBN7.2
Rnor_6.0916,975,193 - 16,975,336NCBIRnor6.0
Rnor_5.0915,872,240 - 15,872,383UniSTSRnor5.0
RGSC_v3.4910,160,454 - 10,160,597UniSTSRGSC3.4
Celera912,345,020 - 12,345,163UniSTS
RH 3.4 Map90.0UniSTS
Cytogenetic Map9q12UniSTS
RH141056  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,308,506 - 14,308,687 (+)MAPPERmRatBN7.2
Rnor_6.0916,618,536 - 16,618,716NCBIRnor6.0
Rnor_5.0915,525,151 - 15,525,331UniSTSRnor5.0
RGSC_v3.4910,045,906 - 10,046,086UniSTSRGSC3.4
Celera912,056,798 - 12,056,978UniSTS
Cytogenetic Map9q12UniSTS
RH141872  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,571,898 - 14,572,100 (+)MAPPERmRatBN7.2
Rnor_6.0916,948,847 - 16,949,048NCBIRnor6.0
Rnor_5.0915,845,894 - 15,846,095UniSTSRnor5.0
RGSC_v3.499,958,549 - 9,958,750UniSTSRGSC3.4
Celera912,319,171 - 12,319,372UniSTS
RH 3.4 Map959.2UniSTS
Cytogenetic Map9q12UniSTS
BM383830  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8921,813,549 - 21,813,699 (+)Marker Load Pipeline
mRatBN7.2914,315,948 - 14,316,098 (+)MAPPERmRatBN7.2
Rnor_6.0916,626,338 - 16,626,487NCBIRnor6.0
Rnor_5.0915,532,953 - 15,533,102UniSTSRnor5.0
RGSC_v3.4910,037,167 - 10,037,316UniSTSRGSC3.4
RH 3.4 Map90.0UniSTS
Cytogenetic Map9q12UniSTS
RH124891  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,319,308 - 14,319,395 (+)MAPPERmRatBN7.2
Rnor_6.0916,629,698 - 16,629,784NCBIRnor6.0
Rnor_6.0916,346,736 - 16,346,822NCBIRnor6.0
Rnor_5.0915,262,443 - 15,262,529UniSTSRnor5.0
Rnor_5.0915,536,313 - 15,536,399UniSTSRnor5.0
RGSC_v3.4910,033,870 - 10,033,956UniSTSRGSC3.4
Celera912,067,177 - 12,067,263UniSTS
Cytogenetic Map9q12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000025335   ⟹   ENSRNOP00000025335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl914,570,859 - 14,601,409 (-)Ensembl
Rnor_6.0 Ensembl916,948,756 - 16,979,044 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000073191   ⟹   ENSRNOP00000067539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl914,563,313 - 14,601,409 (-)Ensembl
Rnor_6.0 Ensembl916,942,359 - 16,979,044 (-)Ensembl
RefSeq Acc Id: NM_001427716   ⟹   NP_001414645
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,060,908 - 22,099,142 (-)NCBI
RefSeq Acc Id: XM_039084820   ⟹   XP_038940748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,068,391 - 22,100,174 (-)NCBI
mRatBN7.2914,568,826 - 14,601,553 (-)NCBI
RefSeq Acc Id: XR_005489448
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,060,899 - 22,100,174 (-)NCBI
mRatBN7.2914,563,370 - 14,601,556 (-)NCBI
RefSeq Acc Id: XR_005489449
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,060,899 - 22,100,174 (-)NCBI
mRatBN7.2914,563,370 - 14,601,556 (-)NCBI
Protein RefSeqs NP_001414645 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940748 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025335
  ENSRNOP00000025335.5
  ENSRNOP00000067539
  ENSRNOP00000067539.3
Ensembl Acc Id: ENSRNOP00000067539   ⟸   ENSRNOT00000073191
Ensembl Acc Id: ENSRNOP00000025335   ⟸   ENSRNOT00000025335
RefSeq Acc Id: XP_038940748   ⟸   XM_039084820
- Peptide Label: isoform X1
- UniProtKB: F1M0H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414645   ⟸   NM_001427716
- UniProtKB: M0RD44 (UniProtKB/TrEMBL),   A6JIR2 (UniProtKB/TrEMBL)
U1-type

Name Modeler Protein Id AA Range Protein Structure
AF-F1M0H0-F1-model_v2 AlphaFold F1M0H0 1-2216 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696527
Promoter ID:EPDNEW_R7048
Type:single initiation site
Name:Zfp318_1
Description:zinc finger protein 318
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0916,979,114 - 16,979,174EPDNEW


1 to 17 of 17 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-28224 BioCyc
Ensembl Genes ENSRNOG00000018741 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025335 ENTREZGENE
  ENSRNOT00000025335.6 UniProtKB/TrEMBL
  ENSRNOT00000073191 ENTREZGENE
  ENSRNOT00000073191.4 UniProtKB/TrEMBL
InterPro Znf318-like UniProtKB/TrEMBL
  Znf_U1 UniProtKB/TrEMBL
NCBI Gene 685082 ENTREZGENE
PANTHER ZINC FINGER CONTAINING PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 318 UniProtKB/TrEMBL
PhenoGen Zfp318 PhenoGen
RatGTEx ENSRNOG00000018741 RatGTEx
SMART ZnF_U1 UniProtKB/TrEMBL
UniProt A6JIR2 ENTREZGENE, UniProtKB/TrEMBL
  F1M0H0 ENTREZGENE, UniProtKB/TrEMBL
  M0RD44 ENTREZGENE, UniProtKB/TrEMBL
1 to 17 of 17 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Zfp318  zinc finger protein 318  LOC685082  similar to zinc finger protein 318 isoform 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685082  similar to zinc finger protein 318 isoform 1  LOC683524  similar to zinc finger protein 318 isoform 1  Data merged from RGD:1585669 1643240 APPROVED
2006-11-19 LOC685082  similar to zinc finger protein 318 isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683524  similar to zinc finger protein 318 isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL