Zfp318 (zinc finger protein 318) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Zfp318 (zinc finger protein 318) Rattus norvegicus
Analyze
Symbol: Zfp318
Name: zinc finger protein 318
RGD ID: 1583221
Description: Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in negative regulation of DNA-templated transcription and positive regulation of DNA-templated transcription. Predicted to be located in cytosol and nucleus. Predicted to be active in nucleoplasm. Orthologous to human ZNF318 (zinc finger protein 318); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC685082; similar to zinc finger protein 318 isoform 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,060,899 - 22,100,174 (-)NCBIGRCr8
mRatBN7.2914,562,958 - 14,601,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,563,313 - 14,601,409 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0916,947,818 - 16,979,131 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,942,359 - 16,979,044 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0915,844,861 - 15,875,058 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.499,957,525 - 10,163,321 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera912,318,142 - 12,383,177 (-)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
nucleoplasm  (IBA,ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12589823   PMID:16446156  


Genomics

Comparative Map Data
Zfp318
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,060,899 - 22,100,174 (-)NCBIGRCr8
mRatBN7.2914,562,958 - 14,601,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,563,313 - 14,601,409 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0916,947,818 - 16,979,131 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,942,359 - 16,979,044 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0915,844,861 - 15,875,058 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.499,957,525 - 10,163,321 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera912,318,142 - 12,383,177 (-)NCBICelera
Cytogenetic Map9q12NCBI
ZNF318
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,336,070 - 43,369,647 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,307,134 - 43,369,647 (-)EnsemblGRCh38hg38GRCh38
GRCh37643,303,808 - 43,337,385 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,411,786 - 43,445,159 (-)NCBINCBI36Build 36hg18NCBI36
Build 34643,411,785 - 43,445,159NCBI
Celera644,855,540 - 44,888,913 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,022,600 - 43,055,973 (-)NCBIHuRef
CHM1_1643,306,727 - 43,340,098 (-)NCBICHM1_1
T2T-CHM13v2.0643,164,983 - 43,198,559 (-)NCBIT2T-CHM13v2.0
Zfp318
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,694,444 - 46,731,846 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,694,657 - 46,731,846 (+)EnsemblGRCm39 Ensembl
GRCm381746,383,515 - 46,420,920 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,383,731 - 46,420,920 (+)EnsemblGRCm38mm10GRCm38
MGSCv371746,520,715 - 46,557,869 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,849,929 - 45,884,109 (+)NCBIMGSCv36mm8
Celera1749,818,603 - 49,855,874 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
Znf318
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,229,069 - 9,259,021 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,221,417 - 9,259,021 (-)NCBIChiLan1.0ChiLan1.0
ZNF318
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2557,836,162 - 57,869,651 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,706,000 - 53,739,592 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0642,928,050 - 42,961,639 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,219,827 - 44,252,553 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,219,827 - 44,252,610 (-)Ensemblpanpan1.1panPan2
ZNF318
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,812,317 - 11,842,584 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,813,346 - 11,842,618 (-)EnsemblCanFam3.1canFam3CanFam3.1
Znf318
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,301,133 - 47,333,726 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647616,626,389 - 16,659,074 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF318
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,359,505 - 38,388,730 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,343,372 - 38,388,883 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2743,859,098 - 43,889,239 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF318
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,782,941 - 28,818,010 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,787,018 - 28,821,406 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604443,374,970 - 43,432,054 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf318
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,219,041 - 16,256,288 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,219,095 - 16,263,365 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp318
214 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:46
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000025335, ENSRNOT00000073191
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat

Markers in Region
RH133362  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,247,553 - 14,247,747 (+)MAPPERmRatBN7.2
Rnor_6.0916,558,157 - 16,558,349NCBIRnor6.0
Rnor_5.0915,464,772 - 15,464,964UniSTSRnor5.0
RGSC_v3.4910,119,974 - 10,120,166UniSTSRGSC3.4
Celera911,996,006 - 11,996,198UniSTS
Cytogenetic Map9q12UniSTS
UniSTS:143850  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,300,349 - 14,300,580 (+)MAPPERmRatBN7.2
mRatBN7.21339,620,792 - 39,620,946 (+)MAPPERmRatBN7.2
Rnor_6.01344,837,513 - 44,837,666NCBIRnor6.0
Rnor_6.0916,610,379 - 16,610,609NCBIRnor6.0
Rnor_5.01349,922,685 - 49,922,838UniSTSRnor5.0
Rnor_5.0915,516,994 - 15,517,224UniSTSRnor5.0
RGSC_v3.41340,828,931 - 40,829,084UniSTSRGSC3.4
RGSC_v3.4910,053,825 - 10,054,055UniSTSRGSC3.4
Celera912,048,639 - 12,048,870UniSTS
Celera1339,994,958 - 39,995,111UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map13q12UniSTS
RH127795  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,350,702 - 14,350,904 (+)MAPPERmRatBN7.2
Rnor_6.0916,661,091 - 16,661,292NCBIRnor6.0
Rnor_5.0915,567,706 - 15,567,907UniSTSRnor5.0
RGSC_v3.4910,002,362 - 10,002,563UniSTSRGSC3.4
Celera912,098,500 - 12,098,701UniSTS
RH 3.4 Map958.3UniSTS
Cytogenetic Map9q12UniSTS
RH127839  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,300,319 - 14,300,530 (+)MAPPERmRatBN7.2
mRatBN7.21092,232,586 - 92,232,928 (+)MAPPERmRatBN7.2
Rnor_6.01095,502,312 - 95,502,653NCBIRnor6.0
Rnor_6.0916,610,349 - 16,610,559NCBIRnor6.0
Rnor_5.01095,237,195 - 95,237,536UniSTSRnor5.0
Rnor_5.0915,516,964 - 15,517,174UniSTSRnor5.0
RGSC_v3.41096,661,306 - 96,661,647UniSTSRGSC3.4
RGSC_v3.4910,053,875 - 10,054,085UniSTSRGSC3.4
Celera912,048,609 - 12,048,820UniSTS
Celera1090,898,167 - 90,898,508UniSTS
RH 3.4 Map953.1UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map10q32.1UniSTS
RH128497  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,334,110 - 14,334,585 (+)MAPPERmRatBN7.2
Rnor_6.0916,644,499 - 16,644,973NCBIRnor6.0
Rnor_5.0915,551,114 - 15,551,588UniSTSRnor5.0
RGSC_v3.4910,018,681 - 10,019,155UniSTSRGSC3.4
Celera912,081,965 - 12,082,439UniSTS
RH 3.4 Map960.4UniSTS
Cytogenetic Map9q12UniSTS
RH129717  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,300,100 - 14,300,315 (+)MAPPERmRatBN7.2
Rnor_6.0916,610,130 - 16,610,344NCBIRnor6.0
Rnor_5.0915,516,745 - 15,516,959UniSTSRnor5.0
RGSC_v3.4910,054,090 - 10,054,304UniSTSRGSC3.4
Celera912,048,390 - 12,048,604UniSTS
RH 3.4 Map955.0UniSTS
Cytogenetic Map9q12UniSTS
RH132300  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,371,237 - 14,371,431 (+)MAPPERmRatBN7.2
Rnor_6.0916,681,627 - 16,681,820NCBIRnor6.0
Rnor_5.0915,588,242 - 15,588,435UniSTSRnor5.0
RGSC_v3.499,981,536 - 9,981,729UniSTSRGSC3.4
Celera912,119,008 - 12,119,201UniSTS
RH 3.4 Map955.0UniSTS
Cytogenetic Map9q12UniSTS
RH132550  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,311,110 - 14,311,303 (+)MAPPERmRatBN7.2
Rnor_6.0916,621,140 - 16,621,332NCBIRnor6.0
Rnor_5.0915,527,755 - 15,527,947UniSTSRnor5.0
RGSC_v3.4910,043,290 - 10,043,482UniSTSRGSC3.4
Celera912,059,404 - 12,059,596UniSTS
RH 3.4 Map956.3UniSTS
Cytogenetic Map9q12UniSTS
RH144000  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,295,417 - 14,295,744 (-)MAPPERmRatBN7.2
mRatBN7.2914,295,417 - 14,295,744 (+)MAPPERmRatBN7.2
Rnor_6.09605,596 - 605,922NCBIRnor6.0
Rnor_6.0916,605,447 - 16,605,773NCBIRnor6.0
Rnor_5.09589,873 - 590,199UniSTSRnor5.0
Rnor_5.0915,512,062 - 15,512,388UniSTSRnor5.0
RGSC_v3.4910,058,661 - 10,058,987UniSTSRGSC3.4
Celera912,043,707 - 12,044,033UniSTS
Cytogenetic Map9q12UniSTS
RH135276  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,228,803 - 14,229,003 (+)MAPPERmRatBN7.2
Rnor_6.0916,539,041 - 16,539,240NCBIRnor6.0
Rnor_5.0915,445,656 - 15,445,855UniSTSRnor5.0
RGSC_v3.4910,101,015 - 10,101,214UniSTSRGSC3.4
Celera911,977,151 - 11,977,350UniSTS
RH 3.4 Map955.4UniSTS
Cytogenetic Map9q12UniSTS
RH137531  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,319,208 - 14,319,331 (+)MAPPERmRatBN7.2
Rnor_6.0916,629,598 - 16,629,720NCBIRnor6.0
Rnor_6.0916,346,636 - 16,346,758NCBIRnor6.0
Rnor_5.0915,262,343 - 15,262,465UniSTSRnor5.0
Rnor_5.0915,536,213 - 15,536,335UniSTSRnor5.0
RGSC_v3.4910,033,934 - 10,034,056UniSTSRGSC3.4
Celera912,067,077 - 12,067,199UniSTS
Cytogenetic Map9q12UniSTS
RH138719  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,598,156 - 14,598,300 (+)MAPPERmRatBN7.2
Rnor_6.0916,975,193 - 16,975,336NCBIRnor6.0
Rnor_5.0915,872,240 - 15,872,383UniSTSRnor5.0
RGSC_v3.4910,160,454 - 10,160,597UniSTSRGSC3.4
Celera912,345,020 - 12,345,163UniSTS
RH 3.4 Map90.0UniSTS
Cytogenetic Map9q12UniSTS
RH141056  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,308,506 - 14,308,687 (+)MAPPERmRatBN7.2
Rnor_6.0916,618,536 - 16,618,716NCBIRnor6.0
Rnor_5.0915,525,151 - 15,525,331UniSTSRnor5.0
RGSC_v3.4910,045,906 - 10,046,086UniSTSRGSC3.4
Celera912,056,798 - 12,056,978UniSTS
Cytogenetic Map9q12UniSTS
RH141872  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,571,898 - 14,572,100 (+)MAPPERmRatBN7.2
Rnor_6.0916,948,847 - 16,949,048NCBIRnor6.0
Rnor_5.0915,845,894 - 15,846,095UniSTSRnor5.0
RGSC_v3.499,958,549 - 9,958,750UniSTSRGSC3.4
Celera912,319,171 - 12,319,372UniSTS
RH 3.4 Map959.2UniSTS
Cytogenetic Map9q12UniSTS
BM383830  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,315,948 - 14,316,098 (+)MAPPERmRatBN7.2
Rnor_6.0916,626,338 - 16,626,487NCBIRnor6.0
Rnor_5.0915,532,953 - 15,533,102UniSTSRnor5.0
RGSC_v3.4910,037,167 - 10,037,316UniSTSRGSC3.4
RH 3.4 Map90.0UniSTS
Cytogenetic Map9q12UniSTS
RH124891  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,319,308 - 14,319,395 (+)MAPPERmRatBN7.2
Rnor_6.0916,629,698 - 16,629,784NCBIRnor6.0
Rnor_6.0916,346,736 - 16,346,822NCBIRnor6.0
Rnor_5.0915,262,443 - 15,262,529UniSTSRnor5.0
Rnor_5.0915,536,313 - 15,536,399UniSTSRnor5.0
RGSC_v3.4910,033,870 - 10,033,956UniSTSRGSC3.4
Celera912,067,177 - 12,067,263UniSTS
Cytogenetic Map9q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 66 24 18 43 18 228 69 140 39
Low 15 75 203 129 26 129 36 45 46 5 24
Below cutoff

Sequence


Ensembl Acc Id: ENSRNOT00000025335   ⟹   ENSRNOP00000025335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl914,570,859 - 14,601,409 (-)Ensembl
Rnor_6.0 Ensembl916,948,756 - 16,979,044 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000073191   ⟹   ENSRNOP00000067539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl914,563,313 - 14,601,409 (-)Ensembl
Rnor_6.0 Ensembl916,942,359 - 16,979,044 (-)Ensembl
RefSeq Acc Id: NM_001427716   ⟹   NP_001414645
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,060,908 - 22,099,142 (-)NCBI
RefSeq Acc Id: XM_039084820   ⟹   XP_038940748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,068,391 - 22,100,174 (-)NCBI
mRatBN7.2914,568,826 - 14,601,553 (-)NCBI
RefSeq Acc Id: XR_005489448
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,060,899 - 22,100,174 (-)NCBI
mRatBN7.2914,563,370 - 14,601,556 (-)NCBI
RefSeq Acc Id: XR_005489449
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,060,899 - 22,100,174 (-)NCBI
mRatBN7.2914,563,370 - 14,601,556 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001414645 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940748 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025335.5
  ENSRNOP00000067539.3
Ensembl Acc Id: ENSRNOP00000067539   ⟸   ENSRNOT00000073191
Ensembl Acc Id: ENSRNOP00000025335   ⟸   ENSRNOT00000025335
RefSeq Acc Id: XP_038940748   ⟸   XM_039084820
- Peptide Label: isoform X1
- UniProtKB: F1M0H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414645   ⟸   NM_001427716
- UniProtKB: A6JIR2 (UniProtKB/TrEMBL),   M0RD44 (UniProtKB/TrEMBL)
Protein Domains
U1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M0H0-F1-model_v2 AlphaFold F1M0H0 1-2216 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696527
Promoter ID:EPDNEW_R7048
Type:single initiation site
Name:Zfp318_1
Description:zinc finger protein 318
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0916,979,114 - 16,979,174EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1583221 AgrOrtholog
BioCyc Gene G2FUF-28224 BioCyc
Ensembl Genes ENSRNOG00000018741 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025335.6 UniProtKB/TrEMBL
  ENSRNOT00000073191.4 UniProtKB/TrEMBL
InterPro Znf_U1 UniProtKB/TrEMBL
NCBI Gene 685082 ENTREZGENE
PANTHER ZINC FINGER CONTAINING PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 318 UniProtKB/TrEMBL
PhenoGen Zfp318 PhenoGen
RatGTEx ENSRNOG00000018741 RatGTEx
SMART ZnF_U1 UniProtKB/TrEMBL
UniProt A6JIR2 ENTREZGENE, UniProtKB/TrEMBL
  F1M0H0 ENTREZGENE, UniProtKB/TrEMBL
  M0RD44 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Zfp318  zinc finger protein 318  LOC685082  similar to zinc finger protein 318 isoform 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685082  similar to zinc finger protein 318 isoform 1  LOC683524  similar to zinc finger protein 318 isoform 1  Data merged from RGD:1585669 1643240 APPROVED
2006-11-19 LOC685082  similar to zinc finger protein 318 isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683524  similar to zinc finger protein 318 isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL