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Gene: Zfp318 (zinc finger protein 318) Rattus norvegicus

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Symbol:

Zfp318

Name:

zinc finger protein 318

RGD ID:

1583221

Description:

Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in negative regulation of DNA-templated transcription and positive regulation of DNA-templated transcription. Predicted to be located in cytosol and nucleus. Predicted to be active in nucleoplasm. Orthologous to human ZNF318 (zinc finger protein 318); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC685082; similar to zinc finger protein 318 isoform 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF318 (zinc finger protein 318)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Zfp318 (zinc finger protein 318)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf318 (zinc finger protein 318)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF318 (zinc finger protein 318)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF318 (zinc finger protein 318)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf318 (zinc finger protein 318)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF318 (zinc finger protein 318)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF318 (zinc finger protein 318)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf318 (zinc finger protein 318)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZNF318 (zinc finger protein 318)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp318 (zinc finger protein 318)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf318 (zinc finger protein 318)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9776	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	D1044.6	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	znf318	Alliance	DIOPT (OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,060,899 - 22,100,174 (-)	NCBI		GRCr8
mRatBN7.2	9	14,562,958 - 14,601,557 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,563,313 - 14,601,409 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	9	16,947,818 - 16,979,131 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	16,942,359 - 16,979,044 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	15,844,861 - 15,875,058 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	9,957,525 - 10,163,321 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	12,318,142 - 12,383,177 (-)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

infantile Refsum disease (ISO)

Zellweger syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

acrylamide (ISO)

aflatoxin B1 (EXP,ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butan-1-ol (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclophosphamide (EXP)

cyclosporin A (ISO)

deguelin (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

leflunomide (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

pentane-2,3-dione (EXP)

phenobarbital (ISO)

propiconazole (ISO)

quercetin (ISO)

ritodrine (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

temozolomide (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of DNA-templated transcription (IBA,ISO)

positive regulation of DNA-templated transcription (IBA,ISO)

Cellular Component

cytosol (IEA,ISO)

nucleoplasm (IBA,ISO)

nucleus (ISO)

Molecular Function

nucleic acid binding (IEA)

protein binding (ISO)

protein heterodimerization activity (ISO)

protein homodimerization activity (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12589823	PMID:16446156

Genomics

Comparative Map Data

Zfp318
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,060,899 - 22,100,174 (-)	NCBI		GRCr8
mRatBN7.2	9	14,562,958 - 14,601,557 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,563,313 - 14,601,409 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	9	16,947,818 - 16,979,131 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	16,942,359 - 16,979,044 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	15,844,861 - 15,875,058 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	9,957,525 - 10,163,321 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	12,318,142 - 12,383,177 (-)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

ZNF318
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	43,336,070 - 43,369,647 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	43,307,134 - 43,369,647 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	43,303,808 - 43,337,385 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	43,411,786 - 43,445,159 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	43,411,785 - 43,445,159	NCBI
Celera	6	44,855,540 - 44,888,913 (-)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	43,022,600 - 43,055,973 (-)	NCBI		HuRef
CHM1_1	6	43,306,727 - 43,340,098 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	43,164,983 - 43,198,559 (-)	NCBI		T2T-CHM13v2.0

Zfp318
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	46,694,444 - 46,731,846 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	46,694,657 - 46,731,846 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	46,383,515 - 46,420,920 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	46,383,731 - 46,420,920 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	46,520,715 - 46,557,869 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	45,849,929 - 45,884,109 (+)	NCBI		MGSCv36	mm8
Celera	17	49,818,603 - 49,855,874 (+)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	22.9	NCBI

Znf318
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	9,229,069 - 9,259,021 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	9,221,417 - 9,259,021 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF318
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	57,836,162 - 57,869,651 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	53,706,000 - 53,739,592 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	42,928,050 - 42,961,639 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	44,219,827 - 44,252,553 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	44,219,827 - 44,252,610 (-)	Ensembl	panpan1.1		panPan2

ZNF318
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	11,812,317 - 11,842,584 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	11,813,346 - 11,842,618 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1

Znf318
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	47,301,133 - 47,333,726 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936476	16,626,389 - 16,659,074 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF318
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	38,359,505 - 38,388,730 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	38,343,372 - 38,388,883 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	43,859,098 - 43,889,239 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF318
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	28,782,941 - 28,818,010 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	28,787,018 - 28,821,406 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	43,374,970 - 43,432,054 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf318
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	16,219,041 - 16,256,288 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	16,219,095 - 16,263,365 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	50
Count of miRNA genes:	46
Interacting mature miRNAs:	46
Transcripts:	ENSRNOT00000025335, ENSRNOT00000073191
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5346479	50346479	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	1	31250552	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	496645	45496645	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	6214995	51214995	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	41763315	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5346479	50416711	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	6714888	29567695	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	496645	45496645	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	21031430	49025574	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	496645	45496645	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	6214995	51214995	Rat

Markers in Region

RH133362

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	9	21,745,163 - 21,745,356 (+)	Marker Load Pipeline
mRatBN7.2	9	14,247,553 - 14,247,747 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,558,157 - 16,558,349	NCBI	Rnor6.0
Rnor_5.0	9	15,464,772 - 15,464,964	UniSTS	Rnor5.0
RGSC_v3.4	9	10,119,974 - 10,120,166	UniSTS	RGSC3.4
Celera	9	11,996,006 - 11,996,198	UniSTS
Cytogenetic Map	9	q12	UniSTS

UniSTS:143850

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,300,349 - 14,300,580 (+)	MAPPER	mRatBN7.2
mRatBN7.2	13	39,620,792 - 39,620,946 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	44,837,513 - 44,837,666	NCBI	Rnor6.0
Rnor_6.0	9	16,610,379 - 16,610,609	NCBI	Rnor6.0
Rnor_5.0	13	49,922,685 - 49,922,838	UniSTS	Rnor5.0
Rnor_5.0	9	15,516,994 - 15,517,224	UniSTS	Rnor5.0
RGSC_v3.4	13	40,828,931 - 40,829,084	UniSTS	RGSC3.4
RGSC_v3.4	9	10,053,825 - 10,054,055	UniSTS	RGSC3.4
Celera	9	12,048,639 - 12,048,870	UniSTS
Celera	13	39,994,958 - 39,995,111	UniSTS
Cytogenetic Map	9	q12	UniSTS
Cytogenetic Map	13	q12	UniSTS

RH127795

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,350,702 - 14,350,904 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,661,091 - 16,661,292	NCBI	Rnor6.0
Rnor_5.0	9	15,567,706 - 15,567,907	UniSTS	Rnor5.0
RGSC_v3.4	9	10,002,362 - 10,002,563	UniSTS	RGSC3.4
Celera	9	12,098,500 - 12,098,701	UniSTS
RH 3.4 Map	9	58.3	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH127839

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,300,319 - 14,300,530 (+)	MAPPER	mRatBN7.2
mRatBN7.2	10	92,232,586 - 92,232,928 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	95,502,312 - 95,502,653	NCBI	Rnor6.0
Rnor_6.0	9	16,610,349 - 16,610,559	NCBI	Rnor6.0
Rnor_5.0	10	95,237,195 - 95,237,536	UniSTS	Rnor5.0
Rnor_5.0	9	15,516,964 - 15,517,174	UniSTS	Rnor5.0
RGSC_v3.4	10	96,661,306 - 96,661,647	UniSTS	RGSC3.4
RGSC_v3.4	9	10,053,875 - 10,054,085	UniSTS	RGSC3.4
Celera	9	12,048,609 - 12,048,820	UniSTS
Celera	10	90,898,167 - 90,898,508	UniSTS
RH 3.4 Map	9	53.1	UniSTS
Cytogenetic Map	9	q12	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

RH128497

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	9	21,831,711 - 21,832,186 (+)	Marker Load Pipeline
mRatBN7.2	9	14,334,110 - 14,334,585 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,644,499 - 16,644,973	NCBI	Rnor6.0
Rnor_5.0	9	15,551,114 - 15,551,588	UniSTS	Rnor5.0
RGSC_v3.4	9	10,018,681 - 10,019,155	UniSTS	RGSC3.4
Celera	9	12,081,965 - 12,082,439	UniSTS
RH 3.4 Map	9	60.4	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH129717

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,300,100 - 14,300,315 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,610,130 - 16,610,344	NCBI	Rnor6.0
Rnor_5.0	9	15,516,745 - 15,516,959	UniSTS	Rnor5.0
RGSC_v3.4	9	10,054,090 - 10,054,304	UniSTS	RGSC3.4
Celera	9	12,048,390 - 12,048,604	UniSTS
RH 3.4 Map	9	55.0	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH132300

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,371,237 - 14,371,431 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,681,627 - 16,681,820	NCBI	Rnor6.0
Rnor_5.0	9	15,588,242 - 15,588,435	UniSTS	Rnor5.0
RGSC_v3.4	9	9,981,536 - 9,981,729	UniSTS	RGSC3.4
Celera	9	12,119,008 - 12,119,201	UniSTS
RH 3.4 Map	9	55.0	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH132550

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,311,110 - 14,311,303 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,621,140 - 16,621,332	NCBI	Rnor6.0
Rnor_5.0	9	15,527,755 - 15,527,947	UniSTS	Rnor5.0
RGSC_v3.4	9	10,043,290 - 10,043,482	UniSTS	RGSC3.4
Celera	9	12,059,404 - 12,059,596	UniSTS
RH 3.4 Map	9	56.3	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH144000

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	9	21,793,018 - 21,793,345 (+)	Marker Load Pipeline
mRatBN7.2	9	14,295,417 - 14,295,744 (-)	MAPPER	mRatBN7.2
mRatBN7.2	9	14,295,417 - 14,295,744 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,605,447 - 16,605,773	NCBI	Rnor6.0
Rnor_6.0	9	605,596 - 605,922	NCBI	Rnor6.0
Rnor_5.0	9	589,873 - 590,199	UniSTS	Rnor5.0
Rnor_5.0	9	15,512,062 - 15,512,388	UniSTS	Rnor5.0
RGSC_v3.4	9	10,058,661 - 10,058,987	UniSTS	RGSC3.4
Celera	9	12,043,707 - 12,044,033	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH135276

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,228,803 - 14,229,003 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,539,041 - 16,539,240	NCBI	Rnor6.0
Rnor_5.0	9	15,445,656 - 15,445,855	UniSTS	Rnor5.0
RGSC_v3.4	9	10,101,015 - 10,101,214	UniSTS	RGSC3.4
Celera	9	11,977,151 - 11,977,350	UniSTS
RH 3.4 Map	9	55.4	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH137531

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,319,208 - 14,319,331 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,629,598 - 16,629,720	NCBI	Rnor6.0
Rnor_6.0	9	16,346,636 - 16,346,758	NCBI	Rnor6.0
Rnor_5.0	9	15,262,343 - 15,262,465	UniSTS	Rnor5.0
Rnor_5.0	9	15,536,213 - 15,536,335	UniSTS	Rnor5.0
RGSC_v3.4	9	10,033,934 - 10,034,056	UniSTS	RGSC3.4
Celera	9	12,067,077 - 12,067,199	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH138719

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,598,156 - 14,598,300 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,975,193 - 16,975,336	NCBI	Rnor6.0
Rnor_5.0	9	15,872,240 - 15,872,383	UniSTS	Rnor5.0
RGSC_v3.4	9	10,160,454 - 10,160,597	UniSTS	RGSC3.4
Celera	9	12,345,020 - 12,345,163	UniSTS
RH 3.4 Map	9	0.0	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH141056

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,308,506 - 14,308,687 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,618,536 - 16,618,716	NCBI	Rnor6.0
Rnor_5.0	9	15,525,151 - 15,525,331	UniSTS	Rnor5.0
RGSC_v3.4	9	10,045,906 - 10,046,086	UniSTS	RGSC3.4
Celera	9	12,056,798 - 12,056,978	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH141872

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,571,898 - 14,572,100 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,948,847 - 16,949,048	NCBI	Rnor6.0
Rnor_5.0	9	15,845,894 - 15,846,095	UniSTS	Rnor5.0
RGSC_v3.4	9	9,958,549 - 9,958,750	UniSTS	RGSC3.4
Celera	9	12,319,171 - 12,319,372	UniSTS
RH 3.4 Map	9	59.2	UniSTS
Cytogenetic Map	9	q12	UniSTS

BM383830

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	9	21,813,549 - 21,813,699 (+)	Marker Load Pipeline
mRatBN7.2	9	14,315,948 - 14,316,098 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,626,338 - 16,626,487	NCBI	Rnor6.0
Rnor_5.0	9	15,532,953 - 15,533,102	UniSTS	Rnor5.0
RGSC_v3.4	9	10,037,167 - 10,037,316	UniSTS	RGSC3.4
RH 3.4 Map	9	0.0	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH124891

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,319,308 - 14,319,395 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,629,698 - 16,629,784	NCBI	Rnor6.0
Rnor_6.0	9	16,346,736 - 16,346,822	NCBI	Rnor6.0
Rnor_5.0	9	15,262,443 - 15,262,529	UniSTS	Rnor5.0
Rnor_5.0	9	15,536,313 - 15,536,399	UniSTS	Rnor5.0
RGSC_v3.4	9	10,033,870 - 10,033,956	UniSTS	RGSC3.4
Celera	9	12,067,177 - 12,067,263	UniSTS
Cytogenetic Map	9	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008757966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	FQ233201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025335 ⟹ ENSRNOP00000025335

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	14,570,859 - 14,601,409 (-)	Ensembl
Rnor_6.0 Ensembl	9	16,948,756 - 16,979,044 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000073191 ⟹ ENSRNOP00000067539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	14,563,313 - 14,601,409 (-)	Ensembl
Rnor_6.0 Ensembl	9	16,942,359 - 16,979,044 (-)	Ensembl

RefSeq Acc Id:

NM_001427716 ⟹ NP_001414645

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,060,908 - 22,099,142 (-)	NCBI

RefSeq Acc Id:

XM_039084820 ⟹ XP_038940748

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,068,391 - 22,100,174 (-)	NCBI
mRatBN7.2	9	14,568,826 - 14,601,553 (-)	NCBI

RefSeq Acc Id:

XR_005489448

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,060,899 - 22,100,174 (-)	NCBI
mRatBN7.2	9	14,563,370 - 14,601,556 (-)	NCBI

RefSeq Acc Id:

XR_005489449

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	22,060,899 - 22,100,174 (-)	NCBI
mRatBN7.2	9	14,563,370 - 14,601,556 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414645	(Get FASTA)	NCBI Sequence Viewer
	XP_038940748	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025335.5
	ENSRNOP00000067539.3

Ensembl Acc Id:

ENSRNOP00000067539 ⟸ ENSRNOT00000073191

Ensembl Acc Id:

ENSRNOP00000025335 ⟸ ENSRNOT00000025335

RefSeq Acc Id:	XP_038940748 ⟸ XM_039084820
- Peptide Label:	isoform X1
- UniProtKB:	F1M0H0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414645 ⟸ NM_001427716
- UniProtKB:	A6JIR2 (UniProtKB/TrEMBL), M0RD44 (UniProtKB/TrEMBL)

Protein Domains

U1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M0H0-F1-model_v2	AlphaFold	F1M0H0	1-2216	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696527

Promoter ID:

EPDNEW_R7048

Type:

single initiation site

Name:

Zfp318_1

Description:

zinc finger protein 318

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	16,979,114 - 16,979,174	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1583221	AgrOrtholog
BioCyc Gene	G2FUF-28224	BioCyc
Ensembl Genes	ENSRNOG00000018741	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025335.6	UniProtKB/TrEMBL
	ENSRNOT00000073191.4	UniProtKB/TrEMBL
InterPro	Znf_U1	UniProtKB/TrEMBL
NCBI Gene	685082	ENTREZGENE
PANTHER	ZINC FINGER CONTAINING PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 318	UniProtKB/TrEMBL
PhenoGen	Zfp318	PhenoGen
RatGTEx	ENSRNOG00000018741	RatGTEx
SMART	ZnF_U1	UniProtKB/TrEMBL
UniProt	A6JIR2	ENTREZGENE, UniProtKB/TrEMBL
	F1M0H0	ENTREZGENE, UniProtKB/TrEMBL
	M0RD44	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Zfp318	zinc finger protein 318	LOC685082	similar to zinc finger protein 318 isoform 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC685082	similar to zinc finger protein 318 isoform 1	LOC683524	similar to zinc finger protein 318 isoform 1	Data merged from RGD:1585669	1643240	APPROVED
2006-11-19	LOC685082	similar to zinc finger protein 318 isoform 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC683524	similar to zinc finger protein 318 isoform 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar