Gorab (golgin, RAB6-interacting) - Rat Genome Database

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Gene: Gorab (golgin, RAB6-interacting) Rattus norvegicus
Analyze
Symbol: Gorab
Name: golgin, RAB6-interacting
RGD ID: 1564990
Description: Predicted to be involved in non-motile cilium assembly. Predicted to act upstream of or within hair follicle morphogenesis and positive regulation of smoothened signaling pathway. Predicted to be located in Golgi apparatus; cytosol; and nuclear lumen. Human ortholog(s) of this gene implicated in geroderma osteodysplasticum. Orthologous to human GORAB (golgin, RAB6 interacting); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC304923; N-terminal kinase-like-binding protein 1; NTKL-binding protein 1; NTKL-BP1; RAB6-interacting golgin; SCY1-like 1 binding protein 1; SCY1-like 1-binding protein 1; SCYL1-binding protein 1; SCYL1-BP1; Scyl1bp1; similar to hypothetical protein FLJ11752
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81378,278,868 - 78,295,490 (-)NCBIGRCr8
mRatBN7.21375,745,678 - 75,762,307 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1375,745,680 - 75,762,298 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1378,363,751 - 78,380,371 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01379,664,246 - 79,680,877 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01376,918,785 - 76,935,416 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01381,682,207 - 81,698,827 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1381,682,018 - 81,698,833 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01386,562,602 - 86,579,222 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41379,103,916 - 79,120,536 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1375,485,051 - 75,501,671 (-)NCBICelera
Cytogenetic Map13q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (IEA,ISO)
Golgi apparatus  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:12783284   PMID:23051735   PMID:23479292   PMID:26572638   PMID:26967474  


Genomics

Comparative Map Data
Gorab
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81378,278,868 - 78,295,490 (-)NCBIGRCr8
mRatBN7.21375,745,678 - 75,762,307 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1375,745,680 - 75,762,298 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1378,363,751 - 78,380,371 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01379,664,246 - 79,680,877 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01376,918,785 - 76,935,416 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01381,682,207 - 81,698,827 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1381,682,018 - 81,698,833 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01386,562,602 - 86,579,222 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41379,103,916 - 79,120,536 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1375,485,051 - 75,501,671 (-)NCBICelera
Cytogenetic Map13q22NCBI
GORAB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381170,532,166 - 170,553,834 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1170,531,819 - 170,553,834 (+)EnsemblGRCh38hg38GRCh38
GRCh371170,501,307 - 170,522,975 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361168,767,894 - 168,789,208 (+)NCBINCBI36Build 36hg18NCBI36
Celera1143,610,894 - 143,632,608 (+)NCBICelera
Cytogenetic Map1q24.2NCBI
HuRef1141,724,791 - 141,746,499 (+)NCBIHuRef
CHM1_11171,923,563 - 171,945,276 (+)NCBICHM1_1
T2T-CHM13v2.01169,888,121 - 169,909,783 (+)NCBIT2T-CHM13v2.0
Gorab
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391163,212,472 - 163,231,238 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1163,212,477 - 163,231,238 (-)EnsemblGRCm39 Ensembl
GRCm381163,384,903 - 163,403,669 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1163,384,908 - 163,403,669 (-)EnsemblGRCm38mm10GRCm38
MGSCv371165,315,040 - 165,333,772 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361165,221,584 - 165,240,316 (-)NCBIMGSCv36mm8
Celera1165,826,170 - 165,844,932 (-)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map170.67NCBI
Gorab
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554626,807,707 - 6,825,935 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554626,807,618 - 6,824,296 (+)NCBIChiLan1.0ChiLan1.0
GORAB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2179,208,756 - 79,230,510 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1178,882,311 - 78,904,217 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01146,020,446 - 146,042,334 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11149,736,635 - 149,758,010 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1149,736,641 - 149,758,010 (+)Ensemblpanpan1.1panPan2
GORAB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1728,220,679 - 28,241,035 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl728,221,064 - 28,241,012 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha727,753,086 - 27,773,387 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0728,022,896 - 28,043,202 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl728,023,804 - 28,043,192 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1727,872,147 - 27,892,433 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0727,907,063 - 27,927,320 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0728,143,266 - 28,163,571 (-)NCBIUU_Cfam_GSD_1.0
Gorab
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934498,485,687 - 98,504,070 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648116,332,439 - 16,350,825 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648116,332,442 - 16,350,822 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GORAB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl480,568,859 - 80,590,679 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1480,568,535 - 80,590,709 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2488,159,921 - 88,173,830 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GORAB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12558,528,062 - 58,549,981 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2558,527,947 - 58,549,891 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605560,184,599 - 60,206,611 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gorab
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248268,230,740 - 8,250,918 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248268,230,545 - 8,250,519 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gorab
78 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:106
Interacting mature miRNAs:124
Transcripts:ENSRNOT00000005148
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)135949252277046890Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)137486211785581182Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)136906051986800898Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)136906051977046890Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)137402391880753406Rat

Markers in Region
D13Got233  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21375,758,288 - 75,758,375 (+)MAPPERmRatBN7.2
Rnor_6.01381,694,818 - 81,694,904NCBIRnor6.0
Rnor_5.01386,575,213 - 86,575,299UniSTSRnor5.0
RGSC_v3.41379,116,527 - 79,116,613UniSTSRGSC3.4
Celera1375,497,662 - 75,497,748UniSTS
Cytogenetic Map13q22UniSTS
RH137718  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21375,746,053 - 75,746,176 (+)MAPPERmRatBN7.2
Rnor_6.01381,682,583 - 81,682,705NCBIRnor6.0
Rnor_5.01386,562,978 - 86,563,100UniSTSRnor5.0
RGSC_v3.41379,104,292 - 79,104,414UniSTSRGSC3.4
Celera1375,485,427 - 75,485,549UniSTS
RH 3.4 Map13473.3UniSTS
Cytogenetic Map13q22UniSTS
RH137979  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21375,749,255 - 75,749,474 (+)MAPPERmRatBN7.2
Rnor_6.01381,685,785 - 81,686,003NCBIRnor6.0
Rnor_5.01386,566,180 - 86,566,398UniSTSRnor5.0
RGSC_v3.41379,107,494 - 79,107,712UniSTSRGSC3.4
Celera1375,488,629 - 75,488,847UniSTS
RH 3.4 Map13472.4UniSTS
Cytogenetic Map13q22UniSTS
UniSTS:234254  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21375,745,718 - 75,746,081 (+)MAPPERmRatBN7.2
Rnor_6.01381,682,248 - 81,682,610NCBIRnor6.0
Rnor_5.01386,562,643 - 86,563,005UniSTSRnor5.0
RGSC_v3.41379,103,957 - 79,104,319UniSTSRGSC3.4
Celera1375,485,092 - 75,485,454UniSTS
Cytogenetic Map13q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 4 8 4 2 4 74 21 34 10
Low 1 39 49 37 17 37 8 11 14 7 1 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005148   ⟹   ENSRNOP00000005148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1375,745,681 - 75,762,298 (-)Ensembl
Rnor_6.0 Ensembl1381,682,018 - 81,698,833 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106402   ⟹   ENSRNOP00000091408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1375,745,680 - 75,758,271 (-)Ensembl
RefSeq Acc Id: NM_001100563   ⟹   NP_001094033
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81378,278,868 - 78,295,488 (-)NCBI
mRatBN7.21375,745,678 - 75,762,298 (-)NCBI
Rnor_6.01381,682,207 - 81,698,827 (-)NCBI
Rnor_5.01386,562,602 - 86,579,222 (-)NCBI
RGSC_v3.41379,103,916 - 79,120,536 (-)RGD
Celera1375,485,051 - 75,501,671 (-)RGD
Sequence:
RefSeq Acc Id: XM_017598824   ⟹   XP_017454313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81378,278,868 - 78,289,959 (-)NCBI
mRatBN7.21375,745,678 - 75,756,765 (-)NCBI
Rnor_6.01381,682,207 - 81,693,246 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063272360   ⟹   XP_063128430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81378,278,868 - 78,295,490 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001094033   ⟸   NM_001100563
- UniProtKB: Q5RK15 (UniProtKB/Swiss-Prot),   B1H222 (UniProtKB/Swiss-Prot),   A6IDC1 (UniProtKB/TrEMBL),   A0A8I6AFD7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454313   ⟸   XM_017598824
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000005148   ⟸   ENSRNOT00000005148
RefSeq Acc Id: ENSRNOP00000091408   ⟸   ENSRNOT00000106402
RefSeq Acc Id: XP_063128430   ⟸   XM_063272360
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1H222-F1-model_v2 AlphaFold B1H222 1-368 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698948
Promoter ID:EPDNEW_R9473
Type:initiation region
Name:Gorab_1
Description:golgin, RAB6-interacting
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01381,698,814 - 81,698,874EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564990 AgrOrtholog
BioCyc Gene G2FUF-17623 BioCyc
Ensembl Genes ENSRNOG00000003861 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055017545 UniProtKB/Swiss-Prot
  ENSRNOG00060009053 UniProtKB/Swiss-Prot
  ENSRNOG00065020477 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000005148 ENTREZGENE
  ENSRNOT00000005148.8 UniProtKB/Swiss-Prot
  ENSRNOT00000106402.1 UniProtKB/TrEMBL
  ENSRNOT00055029679 UniProtKB/Swiss-Prot
  ENSRNOT00060015179 UniProtKB/Swiss-Prot
  ENSRNOT00065034613 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7131809 IMAGE-MGC_LOAD
  IMAGE:7443998 IMAGE-MGC_LOAD
InterPro GORAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:304923 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105883 IMAGE-MGC_LOAD
  MGC:187509 IMAGE-MGC_LOAD
NCBI Gene 304923 ENTREZGENE
PANTHER PTHR21470 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAB6-INTERACTING GOLGIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Transcrip_act UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gorab PhenoGen
RatGTEx ENSRNOG00000003861 RatGTEx
  ENSRNOG00055017545 RatGTEx
  ENSRNOG00060009053 RatGTEx
  ENSRNOG00065020477 RatGTEx
UniProt A0A8I6AFD7 ENTREZGENE, UniProtKB/TrEMBL
  A6IDC1 ENTREZGENE, UniProtKB/TrEMBL
  B1H222 ENTREZGENE, UniProtKB/Swiss-Prot
  Q5RK15 ENTREZGENE
UniProt Secondary Q5RK15 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-05 Gorab  golgin, RAB6-interacting  Scyl1bp1  SCY1-like 1 binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Scyl1bp1  SCY1-like 1 binding protein 1  LOC304923  similar to hypothetical protein FLJ11752  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC304923  similar to hypothetical protein FLJ11752      Symbol and Name status set to provisional 70820 PROVISIONAL