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Gene: Ddx6 (DEAD-box helicase 6) Rattus norvegicus

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Symbol:

Ddx6

Name:

DEAD-box helicase 6

RGD ID:

1564560

Description:

Predicted to enable mRNA binding activity and protein domain specific binding activity. Involved in spermatid differentiation. Located in several cellular components, including chromatoid body; concave side of sperm head; and sperm flagellum. Orthologous to human DDX6 (DEAD-box helicase 6); PARTICIPATES IN microRNA pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

DEAD (Asp-Glu-Ala-Asp) box helicase 6; DEAD (Asp-Glu-Ala-Asp) box polypeptide 6; hypothetical protein LOC500988; LOC500988; probable ATP-dependent RNA helicase DDX6; RGD1564560; similar to RCK

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DDX6 (DEAD-box helicase 6)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Ddx6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ddx6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DDX6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DDX6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ddx6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DDX6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DDX6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ddx6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ddx6 (DEAD-box helicase 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	DDX6 (DEAD-box helicase 6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ddx6 (DEAD (Asp-Glu-Ala-Asp) box helicase 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ddx61 (DEAD (Asp-Glu-Ala-Asp) box helicase 61)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	DHH1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cgh-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	me31B	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ddx6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	53,827,661 - 53,864,538 (+)	NCBI		GRCr8
mRatBN7.2	8	44,931,127 - 44,967,773 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	22,204,317 - 22,205,824 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	8	44,931,974 - 44,964,405 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	50,426,881 - 50,459,302 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	48,705,602 - 48,738,020 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	46,576,050 - 46,608,655 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	48,924,768 - 48,961,394 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,925,604 - 48,958,026 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	47,573,536 - 47,605,957 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	44,516,910 - 44,549,312 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx6	Rat	CD3epsilon deficiency		ISO	DDX6 (Homo sapiens)	8554872	ClinVar Annotator: match by term: CD3epsilon deficiency	ClinVar	PMID:14602880 more ...
Ddx6	Rat	chromosome 11 partial duplication syndrome		ISO	DDX6 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Distal trisomy 11q	ClinVar	PMID:25741868
Ddx6	Rat	Dwarfism		ISO	DDX6 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Short stature	ClinVar	PMID:32581362
Ddx6	Rat	Familial Atrial Fibrillation 14		ISO	DDX6 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Atrial fibrillation more ...	ClinVar	PMID:28492532
Ddx6	Rat	genetic disease		ISO	DDX6 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:25741868
Ddx6	Rat	glycogen storage disease Ib		ISO	DDX6 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Glucose-6-phosphate transport defect	ClinVar	PMID:28492532
Ddx6	Rat	immunodeficiency 17		ISO	DDX6 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:14602880 more ...
Ddx6	Rat	immunodeficiency 18		ISO	DDX6 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Immunodeficiency 18	ClinVar	PMID:14602880 more ...
Ddx6	Rat	immunodeficiency 19		ISO	DDX6 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Immunodeficiency 19	ClinVar	PMID:14602880 more ...
Ddx6	Rat	inflammatory bowel disease 28		ISO	DDX6 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inflammatory bowel disease 28	ClinVar	PMID:14602880 more ...
Ddx6	Rat	INTELLECTUAL DEVELOPMENTAL DISORDER WITH IMPAIRED LANGUAGE AND DYSMORPHIC FACIES		ISO	DDX6 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...
Ddx6	Rat	isolated microphthalmia 5		ISO	DDX6 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Isolated microphthalmia 5	ClinVar	PMID:28492532
Ddx6	Rat	long QT syndrome 10		ISO	DDX6 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Long QT syndrome 10	ClinVar	PMID:28492532
Ddx6	Rat	RASopathy		ISO	DDX6 (Homo sapiens)	8554872	ClinVar Annotator: match by term: RASopathy	ClinVar	PMID:28492532
Ddx6	Rat	teratoma		ISO	DDX6 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Teratoma	ClinVar

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx6	Rat	rheumatoid arthritis		ISO	DDX6 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:23143596

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx6	Rat	INTELLECTUAL DEVELOPMENTAL DISORDER WITH IMPAIRED LANGUAGE AND DYSMORPHIC FACIES		ISO	DDX6 (Homo sapiens)	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx6	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Ddx6 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of DDX6 mRNA	CTD	PMID:36331819
Ddx6	Rat	17alpha-ethynylestradiol	multiple interactions	ISO	Ddx6 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of DDX6 mRNA	CTD	PMID:17942748
Ddx6	Rat	17alpha-ethynylestradiol	increases expression	ISO	Ddx6 (Mus musculus)	6480464	Ethinyl Estradiol results in increased expression of DDX6 mRNA	CTD	PMID:17942748
Ddx6	Rat	17beta-estradiol	increases expression	ISO	DDX6 (Homo sapiens)	6480464	Estradiol results in increased expression of DDX6 mRNA	CTD	PMID:23019147
Ddx6	Rat	17beta-estradiol	affects expression	EXP		6480464	Estradiol affects the expression of DDX6 mRNA	CTD	PMID:32145629
Ddx6	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Ddx6 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of DDX6 mRNA	CTD	PMID:21570461
Ddx6	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of DDX6 mRNA	CTD	PMID:34747641
Ddx6	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Ddx6 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of DDX6 mRNA and Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to DDX6 promoter]	CTD	PMID:17942748 and PMID:19654925
Ddx6	Rat	2,6-dimethoxyphenol	multiple interactions	ISO	DDX6 (Homo sapiens)	6480464	[Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in increased expression of and affects the localization of DDX6 protein	CTD	PMID:38598786
Ddx6	Rat	3,4-methylenedioxymethamphetamine	increases expression	ISO	Ddx6 (Mus musculus)	6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of DDX6 mRNA	CTD	PMID:20188158
Ddx6	Rat	3,4-methylenedioxymethamphetamine	decreases expression	EXP		6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of DDX6 mRNA	CTD	PMID:30071829
Ddx6	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	DDX6 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of DDX6 mRNA	CTD	PMID:28628672
Ddx6	Rat	4,4'-diaminodiphenylmethane	increases expression	ISO	Ddx6 (Mus musculus)	6480464	4 and 4'-diaminodiphenylmethane results in increased expression of DDX6 mRNA	CTD	PMID:18648102
Ddx6	Rat	4,4'-sulfonyldiphenol	affects expression	ISO	DDX6 (Homo sapiens)	6480464	bisphenol S affects the expression of DDX6 protein	CTD	PMID:31945527
Ddx6	Rat	acetamide	decreases expression	EXP		6480464	acetamide results in decreased expression of DDX6 mRNA	CTD	PMID:31881176
Ddx6	Rat	acetazolamide	increases expression	ISO	Ddx6 (Mus musculus)	6480464	Acetazolamide results in increased expression of DDX6 mRNA	CTD	PMID:19274763
Ddx6	Rat	acrylamide	decreases expression	EXP		6480464	Acrylamide results in decreased expression of DDX6 mRNA	CTD	PMID:28959563
Ddx6	Rat	aflatoxin B1	increases expression	ISO	Ddx6 (Mus musculus)	6480464	Aflatoxin B1 results in increased expression of DDX6 mRNA	CTD	PMID:19770486
Ddx6	Rat	all-trans-retinoic acid	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Tretinoin results in decreased expression of DDX6 mRNA	CTD	PMID:16788091
Ddx6	Rat	aristolochic acid A	decreases expression	ISO	DDX6 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of DDX6 mRNA	CTD	PMID:33212167
Ddx6	Rat	Aroclor 1254	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Chlorodiphenyl (54% Chlorine) results in decreased expression of DDX6 mRNA	CTD	PMID:23650126
Ddx6	Rat	arsenite(3-)	affects methylation	ISO	DDX6 (Homo sapiens)	6480464	arsenite affects the methylation of DDX6 promoter	CTD	PMID:23974009
Ddx6	Rat	benzo[a]pyrene	multiple interactions	ISO	Ddx6 (Mus musculus)	6480464	Benzo(a)pyrene promotes the reaction [AHR protein binds to DDX6 promoter]	CTD	PMID:19654925
Ddx6	Rat	benzo[a]pyrene diol epoxide I	decreases expression	ISO	DDX6 (Homo sapiens)	6480464	7 more ...	CTD	PMID:20382639
Ddx6	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Diethylhexyl Phthalate results in decreased expression of DDX6 mRNA	CTD	PMID:33754040
Ddx6	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of DDX6 mRNA	CTD	PMID:30816183 and PMID:33296240
Ddx6	Rat	bisphenol A	decreases expression	ISO	DDX6 (Homo sapiens)	6480464	bisphenol A results in decreased expression of DDX6 protein	CTD	PMID:37567409
Ddx6	Rat	bisphenol A	increases expression	ISO	Ddx6 (Mus musculus)	6480464	bisphenol A results in increased expression of DDX6 mRNA	CTD	PMID:33221593
Ddx6	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of DDX6 mRNA	CTD	PMID:32145629
Ddx6	Rat	bisphenol AF	increases expression	ISO	DDX6 (Homo sapiens)	6480464	bisphenol AF results in increased expression of DDX6 protein	CTD	PMID:34186270
Ddx6	Rat	Bisphenol B	increases expression	ISO	DDX6 (Homo sapiens)	6480464	bisphenol B results in increased expression of DDX6 protein	CTD	PMID:34186270
Ddx6	Rat	bisphenol F	multiple interactions	ISO	DDX6 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of DDX6 mRNA	CTD	PMID:28628672
Ddx6	Rat	bisphenol F	increases expression	ISO	DDX6 (Homo sapiens)	6480464	bisphenol F results in increased expression of DDX6 protein	CTD	PMID:34186270
Ddx6	Rat	bisphenol F	increases expression	ISO	Ddx6 (Mus musculus)	6480464	bisphenol F results in increased expression of DDX6 mRNA	CTD	PMID:38685157
Ddx6	Rat	Brodifacoum	decreases expression	EXP		6480464	bromfenacoum results in decreased expression of DDX6 protein	CTD	PMID:28903499
Ddx6	Rat	carbon nanotube	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681
Ddx6	Rat	cefaloridine	decreases expression	EXP		6480464	Cephaloridine results in decreased expression of DDX6 mRNA	CTD	PMID:18500788
Ddx6	Rat	chloroprene	increases expression	EXP		6480464	Chloroprene results in increased expression of DDX6 mRNA	CTD	PMID:23125180
Ddx6	Rat	chlorpyrifos	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Chlorpyrifos results in decreased expression of DDX6 mRNA	CTD	PMID:37019170
Ddx6	Rat	cocaine	increases expression	EXP		6480464	Cocaine results in increased expression of DDX6 mRNA	CTD	PMID:17898221
Ddx6	Rat	copper(II) sulfate	increases expression	ISO	DDX6 (Homo sapiens)	6480464	Copper Sulfate results in increased expression of DDX6 mRNA	CTD	PMID:19549813
Ddx6	Rat	crocidolite asbestos	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Asbestos and Crocidolite results in decreased expression of DDX6 mRNA	CTD	PMID:29279043
Ddx6	Rat	cyproconazole	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	cyproconazole results in decreased expression of DDX6 mRNA	CTD	PMID:22334560 and PMID:23970803
Ddx6	Rat	dexamethasone	multiple interactions	ISO	DDX6 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of DDX6 mRNA	CTD	PMID:28628672
Ddx6	Rat	dioxygen	multiple interactions	ISO	Ddx6 (Mus musculus)	6480464	[NFE2L2 protein affects the susceptibility to Oxygen] which affects the expression of DDX6 mRNA	CTD	PMID:30529165
Ddx6	Rat	dorsomorphin	multiple interactions	ISO	DDX6 (Homo sapiens)	6480464	[NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of DDX6 mRNA	CTD	PMID:27188386
Ddx6	Rat	doxorubicin	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Doxorubicin results in decreased expression of DDX6 mRNA	CTD	PMID:19277126
Ddx6	Rat	doxorubicin	decreases expression	ISO	DDX6 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of DDX6 mRNA	CTD	PMID:29803840
Ddx6	Rat	enzyme inhibitor	multiple interactions	ISO	DDX6 (Homo sapiens)	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of DDX6 protein	CTD	PMID:23301498
Ddx6	Rat	epoxiconazole	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	epoxiconazole results in decreased expression of DDX6 mRNA	CTD	PMID:22334560
Ddx6	Rat	fenthion	increases expression	ISO	Ddx6 (Mus musculus)	6480464	Fenthion results in increased expression of DDX6 mRNA	CTD	PMID:34813904
Ddx6	Rat	folic acid	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Folic Acid results in decreased expression of DDX6 mRNA	CTD	PMID:25629700
Ddx6	Rat	furfural	multiple interactions	ISO	DDX6 (Homo sapiens)	6480464	[Sodium Chloride co-treated with Furaldehyde] results in decreased expression of and affects the localization of DDX6 protein	CTD	PMID:38598786
Ddx6	Rat	geldanamycin	increases expression	ISO	DDX6 (Homo sapiens)	6480464	geldanamycin results in increased expression of DDX6 mRNA	CTD	PMID:26705709
Ddx6	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of DDX6 mRNA	CTD	PMID:22061828
Ddx6	Rat	glyphosate	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Glyphosate results in decreased expression of DDX6 protein	CTD	PMID:37208198
Ddx6	Rat	indometacin	multiple interactions	ISO	DDX6 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of DDX6 mRNA	CTD	PMID:28628672
Ddx6	Rat	ivermectin	decreases expression	ISO	DDX6 (Homo sapiens)	6480464	Ivermectin results in decreased expression of DDX6 protein	CTD	PMID:32959892
Ddx6	Rat	leflunomide	decreases expression	ISO	DDX6 (Homo sapiens)	6480464	leflunomide results in decreased expression of DDX6 mRNA	CTD	PMID:28988120
Ddx6	Rat	methidathion	affects expression	ISO	Ddx6 (Mus musculus)	6480464	methidathion affects the expression of DDX6 mRNA	CTD	PMID:34813904
Ddx6	Rat	methoxychlor	affects methylation	EXP		6480464	Methoxychlor affects the methylation of DDX6 gene	CTD	PMID:35440735
Ddx6	Rat	methylmercury chloride	decreases expression	ISO	DDX6 (Homo sapiens)	6480464	methylmercuric chloride results in decreased expression of DDX6 mRNA	CTD	PMID:28001369
Ddx6	Rat	oxaliplatin	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in increased expression of DDX6 mRNA	CTD	PMID:25729387
Ddx6	Rat	paracetamol	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Acetaminophen results in decreased expression of DDX6 mRNA	CTD	PMID:17585979
Ddx6	Rat	paracetamol	increases expression	ISO	Ddx6 (Mus musculus)	6480464	Acetaminophen results in increased expression of DDX6 mRNA	CTD	PMID:11264010
Ddx6	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Ddx6 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of DDX6 mRNA and [perfluorooctane sulfonic acid co-treated with Pectins] results in decreased expression of DDX6 mRNA	CTD	PMID:36331819
Ddx6	Rat	phenobarbital	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Phenobarbital results in decreased expression of DDX6 mRNA	CTD	PMID:23091169
Ddx6	Rat	pirinixic acid	multiple interactions	ISO	DDX6 (Homo sapiens)	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in decreased expression of DDX6 mRNA	CTD	PMID:19710929
Ddx6	Rat	progesterone	affects expression	ISO	Ddx6 (Mus musculus)	6480464	Progesterone affects the expression of DDX6 mRNA	CTD	PMID:17251523
Ddx6	Rat	propiconazole	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	propiconazole results in decreased expression of DDX6 mRNA	CTD	PMID:21278054 and PMID:22334560
Ddx6	Rat	SB 431542	multiple interactions	ISO	DDX6 (Homo sapiens)	6480464	[NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of DDX6 mRNA	CTD	PMID:27188386
Ddx6	Rat	silicon dioxide	increases expression	ISO	DDX6 (Homo sapiens)	6480464	Silicon Dioxide analog results in increased expression of DDX6 mRNA	CTD	PMID:25895662
Ddx6	Rat	silicon dioxide	increases expression	ISO	Ddx6 (Mus musculus)	6480464	Silicon Dioxide results in increased expression of DDX6 mRNA	CTD	PMID:19073995
Ddx6	Rat	silver atom	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Silver results in decreased expression of DDX6 mRNA	CTD	PMID:27131904
Ddx6	Rat	silver(0)	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Silver results in decreased expression of DDX6 mRNA	CTD	PMID:27131904
Ddx6	Rat	sodium arsenate	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	sodium arsenate results in decreased expression of DDX6 mRNA	CTD	PMID:21795629
Ddx6	Rat	sodium arsenate	increases expression	ISO	Ddx6 (Mus musculus)	6480464	sodium arsenate results in increased expression of DDX6 mRNA	CTD	PMID:21795629
Ddx6	Rat	sodium arsenite	increases expression	ISO	DDX6 (Homo sapiens)	6480464	sodium arsenite results in increased expression of DDX6 mRNA	CTD	PMID:38568856
Ddx6	Rat	sodium chloride	multiple interactions	ISO	DDX6 (Homo sapiens)	6480464	[Sodium Chloride co-treated with Furaldehyde] results in decreased expression of and affects the localization of DDX6 protein more ...	CTD	PMID:38598786
Ddx6	Rat	tert-butyl hydroperoxide	increases expression	ISO	Ddx6 (Mus musculus)	6480464	tert-Butylhydroperoxide results in increased expression of DDX6 mRNA	CTD	PMID:15003993
Ddx6	Rat	thimerosal	decreases expression	ISO	DDX6 (Homo sapiens)	6480464	Thimerosal results in decreased expression of DDX6 mRNA	CTD	PMID:27188386
Ddx6	Rat	titanium dioxide	increases expression	ISO	Ddx6 (Mus musculus)	6480464	titanium dioxide results in increased expression of DDX6 mRNA	CTD	PMID:23557971
Ddx6	Rat	titanium dioxide	decreases methylation	ISO	Ddx6 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of DDX6 promoter	CTD	PMID:35295148
Ddx6	Rat	titanium dioxide	increases methylation	ISO	Ddx6 (Mus musculus)	6480464	titanium dioxide results in increased methylation of DDX6 gene	CTD	PMID:35295148
Ddx6	Rat	titanium dioxide	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	titanium dioxide results in decreased expression of DDX6 mRNA	CTD	PMID:23557971
Ddx6	Rat	topotecan	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in increased expression of DDX6 mRNA	CTD	PMID:25729387
Ddx6	Rat	trichloroethene	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Trichloroethylene results in decreased expression of DDX6 mRNA	CTD	PMID:19448997
Ddx6	Rat	trichostatin A	decreases expression	ISO	DDX6 (Homo sapiens)	6480464	trichostatin A results in decreased expression of DDX6 mRNA	CTD	PMID:24935251 and PMID:26272509
Ddx6	Rat	trichostatin A	multiple interactions	ISO	DDX6 (Homo sapiens)	6480464	[NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of DDX6 mRNA	CTD	PMID:27188386
Ddx6	Rat	triphenyl phosphate	affects expression	EXP		6480464	triphenyl phosphate affects the expression of DDX6 mRNA	CTD	PMID:30589522
Ddx6	Rat	triphenyl phosphate	affects expression	ISO	DDX6 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of DDX6 mRNA	CTD	PMID:37042841
Ddx6	Rat	troglitazone	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	troglitazone results in decreased expression of DDX6 mRNA	CTD	PMID:28973697
Ddx6	Rat	trovafloxacin	increases expression	ISO	Ddx6 (Mus musculus)	6480464	trovafloxacin results in increased expression of DDX6 mRNA	CTD	PMID:35537566
Ddx6	Rat	tungsten	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Tungsten results in decreased expression of DDX6 mRNA	CTD	PMID:30912803
Ddx6	Rat	valproic acid	decreases expression	ISO	Ddx6 (Mus musculus)	6480464	Valproic Acid results in decreased expression of DDX6 mRNA	CTD	PMID:21427059
Ddx6	Rat	valproic acid	decreases expression	ISO	DDX6 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of DDX6 mRNA	CTD	PMID:23179753 more ...
Ddx6	Rat	vinclozolin	affects expression	EXP		6480464	vinclozolin affects the expression of DDX6 mRNA	CTD	PMID:19015723
Ddx6	Rat	vorinostat	decreases expression	ISO	DDX6 (Homo sapiens)	6480464	vorinostat results in decreased expression of DDX6 mRNA	CTD	PMID:27188386
Ddx6	Rat	zinc atom	multiple interactions	ISO	Ddx6 (Mus musculus)	6480464	[Zinc deficiency promotes the reaction [TRP53 gene mutant form results in increased susceptibility to nitrosobenzylmethylamine]] which results in increased expression of DDX6 mRNA	CTD	PMID:12517797
Ddx6	Rat	zinc(0)	multiple interactions	ISO	Ddx6 (Mus musculus)	6480464	[Zinc deficiency promotes the reaction [TRP53 gene mutant form results in increased susceptibility to nitrosobenzylmethylamine]] which results in increased expression of DDX6 mRNA	CTD	PMID:12517797

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx6	Rat	miRNA-mediated gene silencing by inhibition of translation	acts_upstream_of_positive_effect	ISO	DDX6 (Homo sapiens)	1624291	PMID:27342281	RGD	PMID:27342281
Ddx6	Rat	miRNA-mediated gene silencing by inhibition of translation	acts_upstream_of_positive_effect	IEA	UniProtKB:P26196 and ensembl:ENSP00000442266	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	negative regulation of neuron differentiation	acts_upstream_of_or_within	ISO	Ddx6 (Mus musculus)	1624291	PMID:25456498	RGD	PMID:25456498
Ddx6	Rat	negative regulation of neuron differentiation	acts_upstream_of_or_within	IEA	UniProtKB:P54823 and ensembl:ENSMUSP00000128421	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	negative regulation of translation	involved_in	ISO	DDX6 (Homo sapiens)	1624291	PMID:27342281	RGD	PMID:27342281
Ddx6	Rat	negative regulation of translation	involved_in	IEA	UniProtKB:P26196 and ensembl:ENSP00000442266	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	negative regulation of translation	involved_in	IBA	FB:FBgn0004419 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ddx6	Rat	neuron differentiation	acts_upstream_of	IEA	UniProtKB:P54823 and ensembl:ENSMUSP00000128421	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	neuron differentiation	acts_upstream_of	ISO	Ddx6 (Mus musculus)	1624291	PMID:25456498	RGD	PMID:25456498
Ddx6	Rat	P-body assembly	involved_in	ISO	DDX6 (Homo sapiens)	1624291	PMID:25995375 more ...	RGD	PMID:25995375 more ...
Ddx6	Rat	P-body assembly	acts_upstream_of_or_within	IEA	UniProtKB:P26196 and ensembl:ENSP00000442266	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	P-body assembly	involved_in	IBA	FB:FBgn0004419 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ddx6	Rat	P-body assembly	acts_upstream_of_or_within	ISO	DDX6 (Homo sapiens)	1624291	PMID:20826699	RGD	PMID:20826699
Ddx6	Rat	spermatid differentiation		IEP		10755411		RGD
Ddx6	Rat	spermatogenesis		IEP		10755411		RGD
Ddx6	Rat	stem cell population maintenance	acts_upstream_of_or_within	ISO	Ddx6 (Mus musculus)	1624291	PMID:25456498	RGD	PMID:25456498
Ddx6	Rat	stem cell population maintenance	acts_upstream_of_or_within	IEA	UniProtKB:P54823 and ensembl:ENSMUSP00000128421	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	stress granule assembly	involved_in	IBA	PANTHER:PTN002777617 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ddx6	Rat	viral RNA genome packaging	involved_in	ISO	DDX6 (Homo sapiens)	1624291	PMID:22022269	RGD	PMID:22022269
Ddx6	Rat	viral RNA genome packaging	involved_in	IEA	UniProtKB:P26196 and ensembl:ENSP00000442266	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx6	Rat	adherens junction		IDA		10755411		RGD
Ddx6	Rat	chromatoid body		IDA		10755411		RGD
Ddx6	Rat	concave side of sperm head		IDA		10755411		RGD
Ddx6	Rat	cytoplasm	located_in	ISO	DDX6 (Homo sapiens)	1624291	PMID:26184334 and PMID:28216671	RGD	PMID:26184334 and PMID:28216671
Ddx6	Rat	cytoplasm	located_in	IEA	UniProtKB:P26196 and ensembl:ENSP00000442266	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	cytoplasm	located_in	IEA	UniProtKB:P54823 and ensembl:ENSMUSP00000128421	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	cytoplasm	located_in	ISO	Ddx6 (Mus musculus)	1624291	PMID:20014101	RGD	PMID:20014101
Ddx6	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Ddx6	Rat	cytoplasmic ribonucleoprotein granule	located_in	ISO	DDX6 (Homo sapiens)	1624291		RGD	GO_REF:0000052
Ddx6	Rat	cytoplasmic ribonucleoprotein granule	located_in	ISO	Ddx6 (Mus musculus)	1624291	PMID:37083226	RGD	PMID:37083226
Ddx6	Rat	cytoplasmic ribonucleoprotein granule	located_in	IEA	UniProtKB:P54823 and ensembl:ENSMUSP00000128421	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	cytoplasmic ribonucleoprotein granule	located_in	IEA	UniProtKB:P26196 and ensembl:ENSP00000442266	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	cytoplasmic stress granule	located_in	ISO	DDX6 (Homo sapiens)	1624291	PMID:17392519 and PMID:26184334	RGD	PMID:17392519 and PMID:26184334
Ddx6	Rat	cytoplasmic stress granule	located_in	IEA	UniProtKB:P26196 and ensembl:ENSP00000442266	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	cytoplasmic stress granule	is_active_in	IBA	CGD:CAL0000182112 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ddx6	Rat	cytosol	located_in	IEA	UniProtKB:P26196 and ensembl:ENSP00000442266	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	cytosol	located_in	ISO	DDX6 (Homo sapiens)	1624291		RGD	GO_REF:0000052
Ddx6	Rat	heterochromatin		IDA		10755411		RGD
Ddx6	Rat	nucleus	located_in	ISO	DDX6 (Homo sapiens)	1624291	PMID:26184334 and PMID:28216671	RGD	PMID:26184334 and PMID:28216671
Ddx6	Rat	nucleus	located_in	IEA	UniProtKB:P26196 and ensembl:ENSP00000442266	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	outer dense fiber		IDA		10755411		RGD
Ddx6	Rat	P-body	part_of	ISO	DDX6 (Homo sapiens)	1624291	PMID:22022269	RGD	PMID:22022269
Ddx6	Rat	P-body	located_in	IEA	UniProtKB:P26196 and ensembl:ENSP00000442266	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	P-body	located_in	ISO	Ddx6 (Mus musculus)	1624291	PMID:25456498	RGD	PMID:25456498
Ddx6	Rat	P-body	is_active_in	IBA	FB:FBgn0004419 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ddx6	Rat	P-body	located_in	IEA	UniProtKB:P54823 and ensembl:ENSMUSP00000128421	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	P-body	located_in	ISO	DDX6 (Homo sapiens)	1624291	PMID:16699599 more ...	RGD	PMID:16699599 more ...
Ddx6	Rat	perinuclear region of cytoplasm		IDA		10755411		RGD
Ddx6	Rat	plasma membrane	located_in	ISO	DDX6 (Homo sapiens)	1624291		RGD	GO_REF:0000052
Ddx6	Rat	plasma membrane	located_in	IEA	UniProtKB:P26196 and ensembl:ENSP00000442266	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	RISC complex	part_of	ISO	DDX6 (Homo sapiens)	1624291	PMID:20616046	RGD	PMID:20616046
Ddx6	Rat	RISC complex	part_of	IEA	UniProtKB:P26196 and ensembl:ENSP00000442266	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	sperm annulus		IDA		10755411		RGD

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx6	Rat	ATP binding	enables	IEA	UniProtKB-KW:KW-0067	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Ddx6	Rat	ATP binding	enables	IEA	InterPro:IPR011545	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Ddx6	Rat	helicase activity	enables	IEA	UniProtKB-KW:KW-0347	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Ddx6	Rat	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Ddx6	Rat	mRNA binding	enables	IBA	PANTHER:PTN004651220 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ddx6	Rat	nucleic acid binding	enables	IEA	InterPro:IPR011545	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Ddx6	Rat	nucleotide binding	enables	IEA	UniProtKB-KW:KW-0547	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Ddx6	Rat	protein binding	enables	ISO	DDX6 (Homo sapiens)	1624291	UniProtKB:A0A0C3SFZ9 more ...	RGD	PMID:16364915 more ...
Ddx6	Rat	protein domain specific binding	enables	ISO	DDX6 (Homo sapiens)	1624291	UniProtKB:A5YKK6 and PMID:24768540	RGD	PMID:24768540
Ddx6	Rat	protein domain specific binding	enables	IEA	UniProtKB:P26196 and ensembl:ENSP00000442266	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ddx6	Rat	RNA helicase activity	enables	IEA	EC:3.6.4.13	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
Ddx6	Rat	RNA helicase activity	enables	IEA	InterPro:IPR014014	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx6	Rat	microRNA pathway		ISO	DDX6 (Homo sapiens)	9850104		RGD

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	The role of disordered protein regions in the assembly of decapping complexes and RNP granules.	Jonas S and Izaurralde E, Genes Dev. 2013 Dec 15;27(24):2628-41. doi: 10.1101/gad.227843.113.
3.	DDX6 localizes to nuage structures and the annulus of mammalian spermatogenic cells.	Kawahara C, etal., Histochem Cell Biol. 2014 Jan;141(1):111-21. doi: 10.1007/s00418-013-1153-2. Epub 2013 Oct 20.
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

PMID:16699599	PMID:17392519	PMID:19946888	PMID:20014101	PMID:20616046	PMID:20826699	PMID:22022269	PMID:22658674	PMID:22681889	PMID:22915799	PMID:23125361	PMID:24768540
PMID:25456498	PMID:25468996	PMID:25931508	PMID:26184334	PMID:31422817

Ddx6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	53,827,661 - 53,864,538 (+)	NCBI		GRCr8
mRatBN7.2	8	44,931,127 - 44,967,773 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	22,204,317 - 22,205,824 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	8	44,931,974 - 44,964,405 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	50,426,881 - 50,459,302 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	48,705,602 - 48,738,020 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	46,576,050 - 46,608,655 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	48,924,768 - 48,961,394 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,925,604 - 48,958,026 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	47,573,536 - 47,605,957 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	44,516,910 - 44,549,312 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

DDX6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	118,747,763 - 118,791,744 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	118,747,763 - 118,791,164 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	118,618,472 - 118,662,453 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	118,125,623 - 118,167,082 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	118,125,622 - 118,167,082	NCBI
Celera	11	115,780,242 - 115,819,622 (-)	NCBI		Celera
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	114,556,823 - 114,600,235 (-)	NCBI		HuRef
CHM1_1	11	118,505,094 - 118,548,632 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	118,766,827 - 118,810,815 (-)	NCBI		T2T-CHM13v2.0

Ddx6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	44,514,113 - 44,552,028 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	44,516,189 - 44,552,028 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	44,602,983 - 44,640,731 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	44,604,892 - 44,640,731 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	44,412,975 - 44,448,814 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	44,355,893 - 44,388,101 (+)	NCBI		MGSCv36	mm8
Celera	9	41,863,195 - 41,899,760 (+)	NCBI		Celera
Cytogenetic Map	9	A5.2	NCBI
cM Map	9	24.84	NCBI

Ddx6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	19,854,785 - 19,889,426 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	19,854,785 - 19,889,422 (-)	NCBI	ChiLan1.0	ChiLan1.0

DDX6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	119,453,752 - 119,498,067 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	120,558,829 - 120,603,124 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	113,587,220 - 113,630,995 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	117,515,778 - 117,559,364 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	117,515,778 - 117,559,364 (-)	Ensembl	panpan1.1		panPan2

DDX6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	15,001,988 - 15,034,128 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	15,002,246 - 15,032,348 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	15,054,936 - 15,087,107 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	14,945,428 - 14,978,064 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	14,945,433 - 14,976,842 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	15,084,071 - 15,116,251 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	14,987,876 - 15,020,015 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	15,027,713 - 15,060,132 (+)	NCBI		UU_Cfam_GSD_1.0

Ddx6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	100,827,190 - 100,860,033 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	3,748,575 - 3,780,692 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	3,748,599 - 3,781,405 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DDX6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	46,025,625 - 46,063,818 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	46,025,616 - 46,063,836 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	51,060,184 - 51,098,397 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DDX6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	110,128,450 - 110,172,383 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	110,135,471 - 110,167,463 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	15,861,815 - 15,906,220 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ddx6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	14,142,051 - 14,178,868 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624784	14,142,051 - 14,178,845 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ddx6
142 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	142
Count of miRNA genes:	89
Interacting mature miRNAs:	123
Transcripts:	ENSRNOT00000017391
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	30848154	61290444	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	41866876	75097878	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	58482492	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	26644912	46711092	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	41867010	70386132	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	28242912	53961020	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
5684993	Bmd84	Bone mineral density QTL 84	4.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	8	42692684	50095447	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	29502665	50095447	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	27205715	54998217	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat

RH137988

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	44,959,396 - 44,959,607 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	48,953,020 - 48,953,230	NCBI	Rnor6.0
Rnor_5.0	8	47,571,340 - 47,571,550	UniSTS	Rnor5.0
RGSC_v3.4	8	47,600,951 - 47,601,161	UniSTS	RGSC3.4
Celera	8	44,544,306 - 44,544,516	UniSTS
RH 3.4 Map	8	437.5	UniSTS
Cytogenetic Map	8	q22	UniSTS

UniSTS:265520

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	13	5,345,324 - 5,345,813	NCBI	Rnor5.0
Rnor_5.0	8	24,880,842 - 24,881,319	NCBI	Rnor5.0
Rnor_5.0	13	5,347,411 - 5,347,833	NCBI	Rnor5.0
Rnor_5.0	8	4,260,633 - 4,261,122	NCBI	Rnor5.0
RGSC_v3.4	1	62,083,022 - 62,083,510	UniSTS	RGSC3.4
RGSC_v3.4	13	22,163,646 - 22,164,135	UniSTS	RGSC3.4
Celera	8	3,540,093 - 3,540,581	UniSTS
Celera	13	3,810,235 - 3,810,724	UniSTS
Cytogenetic Map	13	p12	UniSTS
Cytogenetic Map	8	q22	UniSTS
Cytogenetic Map	1	q12	UniSTS

UniSTS:265517

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	22,204,939 - 22,205,700 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	63,776,113 - 63,776,875 (-)	MAPPER	mRatBN7.2
Rnor_6.0	8	4,243,475 - 4,244,236	NCBI	Rnor6.0
Rnor_6.0	8	24,844,522 - 24,845,282	NCBI	Rnor6.0
Rnor_5.0	8	4,259,892 - 4,260,653	UniSTS	Rnor5.0
Rnor_5.0	8	24,881,300 - 24,882,060	UniSTS	Rnor5.0
Cytogenetic Map	13	p12	UniSTS
Cytogenetic Map	1	q12	UniSTS
Cytogenetic Map	8	q22	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001109292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000077445 ⟹ ENSRNOP00000073900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	44,931,974 - 44,964,405 (+)	Ensembl
Rnor_6.0 Ensembl	8	48,925,604 - 48,958,026 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094720 ⟹ ENSRNOP00000077264

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	22,204,317 - 22,205,824 (-)	Ensembl

RefSeq Acc Id:

NM_001109292 ⟹ NP_001102762

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,828,749 - 53,861,170 (+)	NCBI
mRatBN7.2	8	44,931,974 - 44,964,405 (+)	NCBI
Rnor_6.0	8	48,925,604 - 48,958,026 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI
RGSC_v3.4	8	47,573,536 - 47,605,957 (+)	RGD
Celera	8	44,516,910 - 44,549,312 (+)	RGD

Sequence:

show sequence

GGAGCTTCGAGTCAACAATAAAGGACCGAGGGTGCGGAGCGGGAGTGGCCTGGGTGGTAGGACTCGGGCCCGAGCCGCGGGGCGTGGGATTGAAGTGAGTGAATTCAGATATAATTCAAGCTTGTTAG
AGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTTAACTACTGCTGCTTACCGGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCATATATTGAGCAAGACTTA
TTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAAGTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAGGACAGAGAACCCTGTTA
TCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGCCGGCCCTGGAGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACAATCAATAAT
GGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACTGGAAAAAGACTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCACAAAAGGAAA
TGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATGGGCTGGGAAAAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTA
GAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACGGCTGGACCTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGT
CAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCACTGGAGGAACCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTGGTGATTGCTACCCCTGG
CAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATGATAGTATTGGATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTATTCTCACAC
TACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTGAAAGGGGTG
ACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACACTCTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGTTGAGTTACTGGCCAA
GAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAGGAACATAGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTA
CCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGAGACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTG
ATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAACCCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGA
TGAGAAACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTTGGATCTGTGACGCATCATTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTATTTTGGAACTATGAAGA
GTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAAAAACTGAAAAGAAGAAATGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTTTCGTTGCACTAACTGCT
GGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAAAAGAAAGGGAGAAACCCTAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCCGATAGCCGACTCTACTG
CATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAGCTTACTACTTATTTGTGCAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCACAGCCCGAGGAATCAAC
AAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCATTTGGTTTCAAGTTGAAGTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTGGACTAGTGATGGTAGCG
CCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACACTGTAAATACATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGGGCTGAGTAGACGCACCA
TCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATATGACAAGCCTCTGTGCTCTACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGGCACTGGGTGCAAAGACT
TGTCGGAGCC

hide sequence

RefSeq Acc Id:

XM_006242950 ⟹ XP_006243012

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,828,647 - 53,864,538 (+)	NCBI
mRatBN7.2	8	44,931,872 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,925,547 - 48,961,394 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI

Sequence:

show sequence

GGGGCCGGGTGGGGGCGGGCGGAGGTTTCCGAGGAGGAAGGAGCCGCCGCCATTTTGGGAGCTT
CGAGTCAACAATAAAGGACCGAGGATTGAAGTGAGTGAATTCAGATATAATTCAAGCTTGTTAGAGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTTAACTACTGCTGCTTACC
GGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCATATATTGAGCAAGACTTATTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAA
GTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAGGACAGAGAACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGCCGGCCCTGG
AGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACAATCAATAATGGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACTGGAAAAAGA
CTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATGGGCTGGGAA
AAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACGGCTGGACCT
GAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCACTGGAGGAA
CCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTGGTGATTGCTACCCCTGGCAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATGATAGTATTG
GATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTATTCTCACACTACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTAT
GAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTGAAAGGGGTGACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACACTCTTCTCCA
GGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGTTGAGTTACTGGCCAAGAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAGGAACATAGA
AATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTACCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGA
GACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAAC
CCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGATGAGAAACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTTGGATCTGTGACGCATCA
TTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTATTTTGGAACTATGAAGAGTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAAAAACTGAAAAGAAGAAA
TGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTTTCGTTGCACTAACTGCTGGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAAAAGAAAGGGAGAAACCC
TAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCCGATAGCCGACTCTACTGCATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAGCTTACTACTTATTTGTG
CAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCACAGCCCGAGGAATCAACAAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCATTTGGTTTCAAGTTGAA
GTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTGGACTAGTGATGGTAGCGCCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACACTGTAAATA
CATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGGGCTGAGTAGACGCACCATCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATATGACAAGCCTCTGTGCTC
TACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGGCACTGGGTGCAAAGACTTGTCGGAGCCTTGACCCTCTTTCCTCTGTGGCAAAGCGCGACCCATAGAAAATTGTATGTGTAT
ACTTGTATAAACTTTGTAAATAAGTTTTTTTCTGGGTTCATATATATATATATATAAATATATATATATACATACATATATATATTATTTTTTTTGGATGAAGGTTGCTGGGATTAAGGGATTAGAGT
GATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAACACTAAATTCTAAAAAGTGCTTTGGCCTCTAACTATAGGAAGTAGACCTCTGCAGGGCCTGTGTTGGAAAAGGGCCCAGAAGC
CCAGGGCGCCTGTGCGCCACCACACTACTCTTGTAATGTGCATGCAGCGGTCTTAGCAGACAGCAAGGAAGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTCGAGAAGCTCTGTGGTTTGGCTCTCCTG
TCCTAAACGTTTGAGGAACTTCCCAAGTTCCTCAAAGGGGAACAAAGATTAATCTTCCTTGGAGTATGAGAAGTGTACGGAGTGCAGTCTTAGAGCAGAGAGTGTGAACATGGATTCGTACTTCACTG
GACCAGCCAGTACAGCCTCAGCAGGCTTGGCGGTCGTGGAGCTTAGTTATCTGCGGTCACCTCCTGTAGTGTGTGAGTGAACGAAAGCCCTCTGCCCACCTTGACTTGTACATGTTTGCGGGAATGGG
CGACCCCTGAGAGCTGTTAACTCCATGCTGCAGAAAGCTGCTTACCATTCTCGTGCCTGCCGCAGCAAGAATTGCTGTCTGTCCTTTCTTTCGCATTGTAAATTGCCGGCAGATGCTTTAGGTGGGTA
GTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCAGGCAAAAGGAGTGAGATGAATCAAAACCAGTGAACTTTTTTTTAAAAAAATGTTTTTAATTCCCTTTTAACCC
AGTATACTAGGTCAGGAGGCATCTAGGGAACAAAAAAAGCAAAAAACAAAATTTAAAAAAAAAACTGATTTTCATATTCCATCACTTTGAAAACCTTAAACCTATGACAAGGTATGTCACGTGTACGC
TGCCATGCTTAACTCACCTGAATAAAGGAGTCCGCTATTCCAAGTTGCTTTTTGACTGTGCCTAGTTCTAAAGCAAAACTATTTGTGACCTGTCCCAAATTCCTTGGGGATCAAAATCCTAAAGATGC
CTCCTTACCAGATATAACCCTGACTGTAACAGCTGTAGCAGGAGCTGCACGGTACAAAACCCCAAAAGGCAAGTCCAGTCAGTGTTGGTTACAAAACAGAAACCAAATTAAGGAAGTCACTTTTTTAG
GGAGGGTGGGAATGGGGTCTTAAAAATTCTTTGACCAACAGATCTTGCCCTTGTACCGATGCAGTTCTCCTCCTTCCTGCCTTTGGCGAGATGAGAGGGATCTCCATGTAGATCAGCAGCAGGAACGG
AGTATAAACAAACGTGCTAGCTCGCCAGAGGACATGTGGGTGAGTCAACAAGGTGCAGTCTCTTGCCAACCTTGGACTGCTCTGCTAGGTGCCACATGCCTATGAGTCCCTCTTAAAGCACAGACTCC
ACGTGGAGAGTATTCTCAAGTACAGCGTCTGCTGAGCTGTGGCACTTGGACTAGCTGAGCACCCCACTGTCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAGCTCGCTTGAGCTGTTAATGGAAAGATG
CCCTACTGACCAGGTCAGAACCTGGTTATCTTTTTTTTTTTTTTTTTTTCTTTTTTTCCTTTTTAATCCCTCTTAATAAGGAATATTGCTACTATTGGAAATTGTCTTTCAGGTTCTTTCCAGTAATT
TTTAAAGTAATGGTTATGTTTTGTTTTTTCCCAGTAGTTCATTTGGATAAAAACTATGTCCTATTTTTAATATCCACCTCAATGCTTTTAGCCTCTGGTCATAAGCTGTGTAATGAGTCACAGACTGT
TACACACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTCTCCCTTAATGTTCTGAACATGAAAAAACTTTCTTAGAAATGGAATACATTTACCATAAAATGTTTTCCCTGAAAAGGAAAACCTAAGTAAT
TCTAAATTATTTCCAAATGGGTATCAGCATCATAACAATTGGTTGGCCCAAAATGGTGGGGTGGGGTGGGTGGTTGTCATAACTCGTTTTCAGAATGAGATGAGGGCATCTTTCCTTGGCCACCTGCT
TTGTGGTTGGACACCATTGTGCTCAGTTAGAGCAGAGCACAGCACAAAGCTTTGAAAAGTGTTGGAAACAAAACATCTCATTCTGATCATTTGTTTGTTGTTTTTTTTGTTTGTTTTTTGTTTTGTTT
TGTTTTTTTTTTAATATGGGTGGGAGGGGAGGGTACTGTGTCCCAAAAGGGAGGGTGTCTGCACTAAGGATTTAGAAACACTTTGGAAGCTCATAGCCTCATGGGAAACTGCCTTTAGCCACACTCCT
GACCTTTAGATGAGTAACAAAAAGATGGAATGAGTTTGTGGGAATTAAGCCATGTTATTTTAATTGGATACTTTTTTTTTTCAACTTTCTGTGTATCTTTAAAATTGTTACTGTGGAATGATTTTCTT
GCCAAATATCTTTGTCAGGCAAAATTATTGGCCTCAAGGGAGGTGAAGTAAGCCAGATTTTGGGTGAATTTATGTGGACTTTGGTGAGTTTGTAGTTCTACTTTATATTCATAAAGATAGTTTTTTAA
AACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCTTTGGAGGAAAGAGTTAAGTGTCCAAGGGTTGTAACAGATATGAGGTCAGAGGGAGCTCGCCTGGCCTGGACGCTGCCCCTC
CACAGCTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTGGACAGAGCTGGGCAGGGCAAGGGAGGGTGGGCCTGGGTTAGTGAGATGCAGGCTGCTGTATTTTAACCAGTGGTTCTTGGGGAG
GGGTGCCTGGAGAATACAAAGTCACTTCCCTTTTTTGAAACAAAACCAATTAGAAAAAAACTACAATTTTTTTGTTTAGTAAAAATAAGAAAATTCTAATGTCCCTAGTCACAAGGGACCAGTTCCAC
TTTGAACAGTAGGAACTTAAAAATTTGAAAACATTTGGGGAAAGGGAAAATTGGCTTTCTGTTTAATTGGCAAATGTTCCAGTGGGAGGGTCTGTTTTTGTTGGGATGTGTTACAGTATATGTACATG
TCTATGGACCTGAGTCTTTAAGGAATTTATACATGGTTCAGAAAAGATGGTTGGTAAAATCTTGATTATTTCTTTTTGTTAATTTATCTCAATAAAAGCCCACTGGAACTCCAA

hide sequence

RefSeq Acc Id:

XM_006242951 ⟹ XP_006243013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,828,474 - 53,864,538 (+)	NCBI
mRatBN7.2	8	44,931,699 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,925,363 - 48,961,394 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI

Sequence:

show sequence

GAGGGAGGGAGACGACAGCGGCGGGCGAGGGAGGGGGCAGAGCAGCAGAGTCAGCTCCGCTCAGCGGCGACATCCGGGGCGCCGGCACAGCGGGCTACGGCCGAGATTGAAGTGAGTGAATTCAGATA
TAATTCAAGCTTGTTAGAGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTTAACTACTGCTGCTTACCGGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCAT
ATATTGAGCAAGACTTATTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAAGTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAG
GACAGAGAACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGCCGGCCCTGGAGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACA
CCAGCACAATCAATAATGGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACTGGAAAAAGACTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTG
ACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATGGGCTGGGAAAAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGG
TAGGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACGGCTGGACCTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAAC
TTGCTCTACAGGTCAGTCAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCACTGGAGGAACCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTG
GTGATTGCTACCCCTGGCAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATGATAGTATTGGATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGA
GGATATTATTCTCACACTACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGC
TAACTCTGAAAGGGGTGACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACACTCTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGA
GTTGAGTTACTGGCCAAGAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAGGAACATAGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGT
TTGCACTGATCTGTTTACCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGAGACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTG
GCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAACCCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCAC
AGTGAGCCTGCAGAAGATGAGAAACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTTGGATCTGTGACGCATCATTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTA
TTTTGGAACTATGAAGAGTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAAAAACTGAAAAGAAGAAATGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTT
TCGTTGCACTAACTGCTGGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAAAAGAAAGGGAGAAACCCTAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCC
GATAGCCGACTCTACTGCATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAGCTTACTACTTATTTGTGCAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCA
CAGCCCGAGGAATCAACAAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCATTTGGTTTCAAGTTGAAGTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTG
GACTAGTGATGGTAGCGCCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACACTGTAAATACATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGG
GCTGAGTAGACGCACCATCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATATGACAAGCCTCTGTGCTCTACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGG
CACTGGGTGCAAAGACTTGTCGGAGCCTTGACCCTCTTTCCTCTGTGGCAAAGCGCGACCCATAGAAAATTGTATGTGTATACTTGTATAAACTTTGTAAATAAGTTTTTTTCTGGGTTCATATATAT
ATATATATAAATATATATATATACATACATATATATATTATTTTTTTTGGATGAAGGTTGCTGGGATTAAGGGATTAGAGTGATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAACA
CTAAATTCTAAAAAGTGCTTTGGCCTCTAACTATAGGAAGTAGACCTCTGCAGGGCCTGTGTTGGAAAAGGGCCCAGAAGCCCAGGGCGCCTGTGCGCCACCACACTACTCTTGTAATGTGCATGCAG
CGGTCTTAGCAGACAGCAAGGAAGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTCGAGAAGCTCTGTGGTTTGGCTCTCCTGTCCTAAACGTTTGAGGAACTTCCCAAGTTCCTCAAAGGGGAACAAAG
ATTAATCTTCCTTGGAGTATGAGAAGTGTACGGAGTGCAGTCTTAGAGCAGAGAGTGTGAACATGGATTCGTACTTCACTGGACCAGCCAGTACAGCCTCAGCAGGCTTGGCGGTCGTGGAGCTTAGT
TATCTGCGGTCACCTCCTGTAGTGTGTGAGTGAACGAAAGCCCTCTGCCCACCTTGACTTGTACATGTTTGCGGGAATGGGCGACCCCTGAGAGCTGTTAACTCCATGCTGCAGAAAGCTGCTTACCA
TTCTCGTGCCTGCCGCAGCAAGAATTGCTGTCTGTCCTTTCTTTCGCATTGTAAATTGCCGGCAGATGCTTTAGGTGGGTAGTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCT
GATCTCCAGGCAAAAGGAGTGAGATGAATCAAAACCAGTGAACTTTTTTTTAAAAAAATGTTTTTAATTCCCTTTTAACCCAGTATACTAGGTCAGGAGGCATCTAGGGAACAAAAAAAGCAAAAAAC
AAAATTTAAAAAAAAAACTGATTTTCATATTCCATCACTTTGAAAACCTTAAACCTATGACAAGGTATGTCACGTGTACGCTGCCATGCTTAACTCACCTGAATAAAGGAGTCCGCTATTCCAAGTTG
CTTTTTGACTGTGCCTAGTTCTAAAGCAAAACTATTTGTGACCTGTCCCAAATTCCTTGGGGATCAAAATCCTAAAGATGCCTCCTTACCAGATATAACCCTGACTGTAACAGCTGTAGCAGGAGCTG
CACGGTACAAAACCCCAAAAGGCAAGTCCAGTCAGTGTTGGTTACAAAACAGAAACCAAATTAAGGAAGTCACTTTTTTAGGGAGGGTGGGAATGGGGTCTTAAAAATTCTTTGACCAACAGATCTTG
CCCTTGTACCGATGCAGTTCTCCTCCTTCCTGCCTTTGGCGAGATGAGAGGGATCTCCATGTAGATCAGCAGCAGGAACGGAGTATAAACAAACGTGCTAGCTCGCCAGAGGACATGTGGGTGAGTCA
ACAAGGTGCAGTCTCTTGCCAACCTTGGACTGCTCTGCTAGGTGCCACATGCCTATGAGTCCCTCTTAAAGCACAGACTCCACGTGGAGAGTATTCTCAAGTACAGCGTCTGCTGAGCTGTGGCACTT
GGACTAGCTGAGCACCCCACTGTCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAGCTCGCTTGAGCTGTTAATGGAAAGATGCCCTACTGACCAGGTCAGAACCTGGTTATCTTTTTTTTTTTTTTTTT
TTCTTTTTTTCCTTTTTAATCCCTCTTAATAAGGAATATTGCTACTATTGGAAATTGTCTTTCAGGTTCTTTCCAGTAATTTTTAAAGTAATGGTTATGTTTTGTTTTTTCCCAGTAGTTCATTTGGA
TAAAAACTATGTCCTATTTTTAATATCCACCTCAATGCTTTTAGCCTCTGGTCATAAGCTGTGTAATGAGTCACAGACTGTTACACACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTCTCCCTTAATG
TTCTGAACATGAAAAAACTTTCTTAGAAATGGAATACATTTACCATAAAATGTTTTCCCTGAAAAGGAAAACCTAAGTAATTCTAAATTATTTCCAAATGGGTATCAGCATCATAACAATTGGTTGGC
CCAAAATGGTGGGGTGGGGTGGGTGGTTGTCATAACTCGTTTTCAGAATGAGATGAGGGCATCTTTCCTTGGCCACCTGCTTTGTGGTTGGACACCATTGTGCTCAGTTAGAGCAGAGCACAGCACAA
AGCTTTGAAAAGTGTTGGAAACAAAACATCTCATTCTGATCATTTGTTTGTTGTTTTTTTTGTTTGTTTTTTGTTTTGTTTTGTTTTTTTTTTAATATGGGTGGGAGGGGAGGGTACTGTGTCCCAAA
AGGGAGGGTGTCTGCACTAAGGATTTAGAAACACTTTGGAAGCTCATAGCCTCATGGGAAACTGCCTTTAGCCACACTCCTGACCTTTAGATGAGTAACAAAAAGATGGAATGAGTTTGTGGGAATTA
AGCCATGTTATTTTAATTGGATACTTTTTTTTTTCAACTTTCTGTGTATCTTTAAAATTGTTACTGTGGAATGATTTTCTTGCCAAATATCTTTGTCAGGCAAAATTATTGGCCTCAAGGGAGGTGAA
GTAAGCCAGATTTTGGGTGAATTTATGTGGACTTTGGTGAGTTTGTAGTTCTACTTTATATTCATAAAGATAGTTTTTTAAAACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCT
TTGGAGGAAAGAGTTAAGTGTCCAAGGGTTGTAACAGATATGAGGTCAGAGGGAGCTCGCCTGGCCTGGACGCTGCCCCTCCACAGCTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTGGAC
AGAGCTGGGCAGGGCAAGGGAGGGTGGGCCTGGGTTAGTGAGATGCAGGCTGCTGTATTTTAACCAGTGGTTCTTGGGGAGGGGTGCCTGGAGAATACAAAGTCACTTCCCTTTTTTGAAACAAAACC
AATTAGAAAAAAACTACAATTTTTTTGTTTAGTAAAAATAAGAAAATTCTAATGTCCCTAGTCACAAGGGACCAGTTCCACTTTGAACAGTAGGAACTTAAAAATTTGAAAACATTTGGGGAAAGGGA
AAATTGGCTTTCTGTTTAATTGGCAAATGTTCCAGTGGGAGGGTCTGTTTTTGTTGGGATGTGTTACAGTATATGTACATGTCTATGGACCTGAGTCTTTAAGGAATTTATACATGGTTCAGAAAAGA
TGGTTGGTAAAATCTTGATTATTTCTTTTTGTTAATTTATCTCAATAAAAGCCCACTGGAACTCCAA

hide sequence

RefSeq Acc Id:

XM_006242952 ⟹ XP_006243014

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,828,686 - 53,864,538 (+)	NCBI
mRatBN7.2	8	44,931,911 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,925,563 - 48,961,394 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI

Sequence:

show sequence

GGGCGGAGGTTTCCGAGGAGGAAGGAGCCGCCGCCATTTTGGGAGCTTCGAGTCAACAATAAAGGACCGAGGGTGCGGAGCGGGAGTGGCCTGGGTGATTGAAGTGAGTGAATTCAGATATAATTCAA
GCTTGTTAGAGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTTAACTACTGCTGCTTACCGGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCATATATTGAG
CAAGACTTATTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAAGTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAGGACAGAGA
ACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGCCGGCCCTGGAGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACA
ATCAATAATGGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACTGGAAAAAGACTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCAC
AAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATGGGCTGGGAAAAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATA
TCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACGGCTGGACCTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTA
CAGGTCAGTCAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCACTGGAGGAACCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTGGTGATTGC
TACCCCTGGCAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATGATAGTATTGGATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTA
TTCTCACACTACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTG
AAAGGGGTGACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACACTCTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGTTGAGTT
ACTGGCCAAGAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAGGAACATAGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTG
ATCTGTTTACCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGAGACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTGGCTTAGCC
ATCAACTTGATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAACCCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCC
TGCAGAAGATGAGAAACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTTGGATCTGTGACGCATCATTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTATTTTGGAA
CTATGAAGAGTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAAAAACTGAAAAGAAGAAATGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTTTCGTTGCA
CTAACTGCTGGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAAAAGAAAGGGAGAAACCCTAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCCGATAGCCG
ACTCTACTGCATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAGCTTACTACTTATTTGTGCAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCACAGCCCGA
GGAATCAACAAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCATTTGGTTTCAAGTTGAAGTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTGGACTAGTG
ATGGTAGCGCCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACACTGTAAATACATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGGGCTGAGTA
GACGCACCATCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATATGACAAGCCTCTGTGCTCTACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGGCACTGGGT
GCAAAGACTTGTCGGAGCCTTGACCCTCTTTCCTCTGTGGCAAAGCGCGACCCATAGAAAATTGTATGTGTATACTTGTATAAACTTTGTAAATAAGTTTTTTTCTGGGTTCATATATATATATATAT
AAATATATATATATACATACATATATATATTATTTTTTTTGGATGAAGGTTGCTGGGATTAAGGGATTAGAGTGATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAACACTAAATTC
TAAAAAGTGCTTTGGCCTCTAACTATAGGAAGTAGACCTCTGCAGGGCCTGTGTTGGAAAAGGGCCCAGAAGCCCAGGGCGCCTGTGCGCCACCACACTACTCTTGTAATGTGCATGCAGCGGTCTTA
GCAGACAGCAAGGAAGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTCGAGAAGCTCTGTGGTTTGGCTCTCCTGTCCTAAACGTTTGAGGAACTTCCCAAGTTCCTCAAAGGGGAACAAAGATTAATCT
TCCTTGGAGTATGAGAAGTGTACGGAGTGCAGTCTTAGAGCAGAGAGTGTGAACATGGATTCGTACTTCACTGGACCAGCCAGTACAGCCTCAGCAGGCTTGGCGGTCGTGGAGCTTAGTTATCTGCG
GTCACCTCCTGTAGTGTGTGAGTGAACGAAAGCCCTCTGCCCACCTTGACTTGTACATGTTTGCGGGAATGGGCGACCCCTGAGAGCTGTTAACTCCATGCTGCAGAAAGCTGCTTACCATTCTCGTG
CCTGCCGCAGCAAGAATTGCTGTCTGTCCTTTCTTTCGCATTGTAAATTGCCGGCAGATGCTTTAGGTGGGTAGTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCA
GGCAAAAGGAGTGAGATGAATCAAAACCAGTGAACTTTTTTTTAAAAAAATGTTTTTAATTCCCTTTTAACCCAGTATACTAGGTCAGGAGGCATCTAGGGAACAAAAAAAGCAAAAAACAAAATTTA
AAAAAAAAACTGATTTTCATATTCCATCACTTTGAAAACCTTAAACCTATGACAAGGTATGTCACGTGTACGCTGCCATGCTTAACTCACCTGAATAAAGGAGTCCGCTATTCCAAGTTGCTTTTTGA
CTGTGCCTAGTTCTAAAGCAAAACTATTTGTGACCTGTCCCAAATTCCTTGGGGATCAAAATCCTAAAGATGCCTCCTTACCAGATATAACCCTGACTGTAACAGCTGTAGCAGGAGCTGCACGGTAC
AAAACCCCAAAAGGCAAGTCCAGTCAGTGTTGGTTACAAAACAGAAACCAAATTAAGGAAGTCACTTTTTTAGGGAGGGTGGGAATGGGGTCTTAAAAATTCTTTGACCAACAGATCTTGCCCTTGTA
CCGATGCAGTTCTCCTCCTTCCTGCCTTTGGCGAGATGAGAGGGATCTCCATGTAGATCAGCAGCAGGAACGGAGTATAAACAAACGTGCTAGCTCGCCAGAGGACATGTGGGTGAGTCAACAAGGTG
CAGTCTCTTGCCAACCTTGGACTGCTCTGCTAGGTGCCACATGCCTATGAGTCCCTCTTAAAGCACAGACTCCACGTGGAGAGTATTCTCAAGTACAGCGTCTGCTGAGCTGTGGCACTTGGACTAGC
TGAGCACCCCACTGTCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAGCTCGCTTGAGCTGTTAATGGAAAGATGCCCTACTGACCAGGTCAGAACCTGGTTATCTTTTTTTTTTTTTTTTTTTCTTTTT
TTCCTTTTTAATCCCTCTTAATAAGGAATATTGCTACTATTGGAAATTGTCTTTCAGGTTCTTTCCAGTAATTTTTAAAGTAATGGTTATGTTTTGTTTTTTCCCAGTAGTTCATTTGGATAAAAACT
ATGTCCTATTTTTAATATCCACCTCAATGCTTTTAGCCTCTGGTCATAAGCTGTGTAATGAGTCACAGACTGTTACACACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTCTCCCTTAATGTTCTGAAC
ATGAAAAAACTTTCTTAGAAATGGAATACATTTACCATAAAATGTTTTCCCTGAAAAGGAAAACCTAAGTAATTCTAAATTATTTCCAAATGGGTATCAGCATCATAACAATTGGTTGGCCCAAAATG
GTGGGGTGGGGTGGGTGGTTGTCATAACTCGTTTTCAGAATGAGATGAGGGCATCTTTCCTTGGCCACCTGCTTTGTGGTTGGACACCATTGTGCTCAGTTAGAGCAGAGCACAGCACAAAGCTTTGA
AAAGTGTTGGAAACAAAACATCTCATTCTGATCATTTGTTTGTTGTTTTTTTTGTTTGTTTTTTGTTTTGTTTTGTTTTTTTTTTAATATGGGTGGGAGGGGAGGGTACTGTGTCCCAAAAGGGAGGG
TGTCTGCACTAAGGATTTAGAAACACTTTGGAAGCTCATAGCCTCATGGGAAACTGCCTTTAGCCACACTCCTGACCTTTAGATGAGTAACAAAAAGATGGAATGAGTTTGTGGGAATTAAGCCATGT
TATTTTAATTGGATACTTTTTTTTTTCAACTTTCTGTGTATCTTTAAAATTGTTACTGTGGAATGATTTTCTTGCCAAATATCTTTGTCAGGCAAAATTATTGGCCTCAAGGGAGGTGAAGTAAGCCA
GATTTTGGGTGAATTTATGTGGACTTTGGTGAGTTTGTAGTTCTACTTTATATTCATAAAGATAGTTTTTTAAAACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCTTTGGAGGA
AAGAGTTAAGTGTCCAAGGGTTGTAACAGATATGAGGTCAGAGGGAGCTCGCCTGGCCTGGACGCTGCCCCTCCACAGCTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTGGACAGAGCTGG
GCAGGGCAAGGGAGGGTGGGCCTGGGTTAGTGAGATGCAGGCTGCTGTATTTTAACCAGTGGTTCTTGGGGAGGGGTGCCTGGAGAATACAAAGTCACTTCCCTTTTTTGAAACAAAACCAATTAGAA
AAAAACTACAATTTTTTTGTTTAGTAAAAATAAGAAAATTCTAATGTCCCTAGTCACAAGGGACCAGTTCCACTTTGAACAGTAGGAACTTAAAAATTTGAAAACATTTGGGGAAAGGGAAAATTGGC
TTTCTGTTTAATTGGCAAATGTTCCAGTGGGAGGGTCTGTTTTTGTTGGGATGTGTTACAGTATATGTACATGTCTATGGACCTGAGTCTTTAAGGAATTTATACATGGTTCAGAAAAGATGGTTGGT
AAAATCTTGATTATTTCTTTTTGTTAATTTATCTCAATAAAAGCCCACTGGAACTCCAA

hide sequence

RefSeq Acc Id:

XM_006242954 ⟹ XP_006243016

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,827,661 - 53,864,538 (+)	NCBI
mRatBN7.2	8	44,931,127 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,924,768 - 48,961,394 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI

Sequence:

show sequence

TTTCTAGAAGAGTGCCACTGCCGGCAGGAGCAAAGGGTCACCTCGCCTGCACTCTGGGCTTGGT
AGCCCACGACCTAGGGCGGGCTCCCGGTTCACGCTTTCCCCGCTGCCTCGCCGACAGCCTCGGCCCTTCAGGCCCAATTTTTCTGCACGTCCCTGGGTGGAGGTGCGCCCTGGCCTCGCAGCAGCCTC
CCGGCCACCCCAGGTCAGCTTCCGGACCGGCGCAGGCTGCCCTCCGAGCGCGTCCCCGGTCAGCAGTCAGCAGGCGTCCCCTCCGCCCGGCCCGGCCAGCCCAGCTCAGGAGGGACGAAGGCAAGGAC
GACACTCCCCGGCCACCATTCATTTCCCCACTGGTCTCCTCAGCTCTGCAGATTGAAGTGAGTGAATTCAGATATAATTCAAGCTTGTTAGAGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTG
AGAGCAAGTTAACTACTGCTGCTTACCGGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCATATATTGAGCAAGACTTATTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTA
TTACAGTTTCTCTACTGACTTTGAAAAGTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAGGACAGAGAACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGG
CCCTGTGAAGGCCAGTGCCGGCCCTGGAGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACAATCAATAATGGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCA
TTAAACCTGGTGATGACTGGAAAAAGACTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTA
ATGGGAATTTTTGAAATGGGCTGGGAAAAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCT
CATCCCCTTACTTGAACGGCTGGACCTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGG
CCAAAGTGATGGCGACCACTGGAGGAACCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTGGTGATTGCTACCCCTGGCAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAG
GTTGATCATGTCCAGATGATAGTATTGGATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTATTCTCACACTACCTAAAAATAGGCAGATTTTACTATATTCCGCTAC
TTTCCCTCTTAGTGTACAAAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTGAAAGGGGTGACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAG
TGCACTGCCTCAATACACTCTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGTTGAGTTACTGGCCAAGAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATC
CATGCTAAAATGAGGCAGGAACATAGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTACCCGAGGTATTGATATACAAGCTGTGAATGTGGTAAT
AAACTTTGACTTCCCAAAGCTGGCAGAGACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAACCTGAAGAGTATTG
AGGAGCAGCTGGGGACAGAGATCAAACCCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGATGAGAAACCTTAACAAGCACGCTTTGACAAACTACAG
AAGGCTCCTTGGATCTGTGACGCATCATTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTATTTTGGAACTATGAAGAGTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAAC
TGGTGAAGAAAAACTGAAAAGAAGAAATGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTTTCGTTGCACTAACTGCTGGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGG
AAGGAGGAAAAAGAAAGGGAGAAACCCTAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCCGATAGCCGACTCTACTGCATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAA
GCCTGAAGAGCTTACTACTTATTTGTGCAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCACAGCCCGAGGAATCAACAAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTT
TGCCTCTTCATTTGGTTTCAAGTTGAAGTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTGGACTAGTGATGGTAGCGCCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCAC
AACTGCAGTCCATCCACACTGTAAATACATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGGGCTGAGTAGACGCACCATCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCA
GGAGCCATATGACAAGCCTCTGTGCTCTACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGGCACTGGGTGCAAAGACTTGTCGGAGCCTTGACCCTCTTTCCTCTGTGGCAAAGC
GCGACCCATAGAAAATTGTATGTGTATACTTGTATAAACTTTGTAAATAAGTTTTTTTCTGGGTTCATATATATATATATATAAATATATATATATACATACATATATATATTATTTTTTTTGGATGA
AGGTTGCTGGGATTAAGGGATTAGAGTGATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAACACTAAATTCTAAAAAGTGCTTTGGCCTCTAACTATAGGAAGTAGACCTCTGCAGG
GCCTGTGTTGGAAAAGGGCCCAGAAGCCCAGGGCGCCTGTGCGCCACCACACTACTCTTGTAATGTGCATGCAGCGGTCTTAGCAGACAGCAAGGAAGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTC
GAGAAGCTCTGTGGTTTGGCTCTCCTGTCCTAAACGTTTGAGGAACTTCCCAAGTTCCTCAAAGGGGAACAAAGATTAATCTTCCTTGGAGTATGAGAAGTGTACGGAGTGCAGTCTTAGAGCAGAGA
GTGTGAACATGGATTCGTACTTCACTGGACCAGCCAGTACAGCCTCAGCAGGCTTGGCGGTCGTGGAGCTTAGTTATCTGCGGTCACCTCCTGTAGTGTGTGAGTGAACGAAAGCCCTCTGCCCACCT
TGACTTGTACATGTTTGCGGGAATGGGCGACCCCTGAGAGCTGTTAACTCCATGCTGCAGAAAGCTGCTTACCATTCTCGTGCCTGCCGCAGCAAGAATTGCTGTCTGTCCTTTCTTTCGCATTGTAA
ATTGCCGGCAGATGCTTTAGGTGGGTAGTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCAGGCAAAAGGAGTGAGATGAATCAAAACCAGTGAACTTTTTTTTAAA
AAAATGTTTTTAATTCCCTTTTAACCCAGTATACTAGGTCAGGAGGCATCTAGGGAACAAAAAAAGCAAAAAACAAAATTTAAAAAAAAAACTGATTTTCATATTCCATCACTTTGAAAACCTTAAAC
CTATGACAAGGTATGTCACGTGTACGCTGCCATGCTTAACTCACCTGAATAAAGGAGTCCGCTATTCCAAGTTGCTTTTTGACTGTGCCTAGTTCTAAAGCAAAACTATTTGTGACCTGTCCCAAATT
CCTTGGGGATCAAAATCCTAAAGATGCCTCCTTACCAGATATAACCCTGACTGTAACAGCTGTAGCAGGAGCTGCACGGTACAAAACCCCAAAAGGCAAGTCCAGTCAGTGTTGGTTACAAAACAGAA
ACCAAATTAAGGAAGTCACTTTTTTAGGGAGGGTGGGAATGGGGTCTTAAAAATTCTTTGACCAACAGATCTTGCCCTTGTACCGATGCAGTTCTCCTCCTTCCTGCCTTTGGCGAGATGAGAGGGAT
CTCCATGTAGATCAGCAGCAGGAACGGAGTATAAACAAACGTGCTAGCTCGCCAGAGGACATGTGGGTGAGTCAACAAGGTGCAGTCTCTTGCCAACCTTGGACTGCTCTGCTAGGTGCCACATGCCT
ATGAGTCCCTCTTAAAGCACAGACTCCACGTGGAGAGTATTCTCAAGTACAGCGTCTGCTGAGCTGTGGCACTTGGACTAGCTGAGCACCCCACTGTCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAG
CTCGCTTGAGCTGTTAATGGAAAGATGCCCTACTGACCAGGTCAGAACCTGGTTATCTTTTTTTTTTTTTTTTTTTCTTTTTTTCCTTTTTAATCCCTCTTAATAAGGAATATTGCTACTATTGGAAA
TTGTCTTTCAGGTTCTTTCCAGTAATTTTTAAAGTAATGGTTATGTTTTGTTTTTTCCCAGTAGTTCATTTGGATAAAAACTATGTCCTATTTTTAATATCCACCTCAATGCTTTTAGCCTCTGGTCA
TAAGCTGTGTAATGAGTCACAGACTGTTACACACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTCTCCCTTAATGTTCTGAACATGAAAAAACTTTCTTAGAAATGGAATACATTTACCATAAAATGTT
TTCCCTGAAAAGGAAAACCTAAGTAATTCTAAATTATTTCCAAATGGGTATCAGCATCATAACAATTGGTTGGCCCAAAATGGTGGGGTGGGGTGGGTGGTTGTCATAACTCGTTTTCAGAATGAGAT
GAGGGCATCTTTCCTTGGCCACCTGCTTTGTGGTTGGACACCATTGTGCTCAGTTAGAGCAGAGCACAGCACAAAGCTTTGAAAAGTGTTGGAAACAAAACATCTCATTCTGATCATTTGTTTGTTGT
TTTTTTTGTTTGTTTTTTGTTTTGTTTTGTTTTTTTTTTAATATGGGTGGGAGGGGAGGGTACTGTGTCCCAAAAGGGAGGGTGTCTGCACTAAGGATTTAGAAACACTTTGGAAGCTCATAGCCTCA
TGGGAAACTGCCTTTAGCCACACTCCTGACCTTTAGATGAGTAACAAAAAGATGGAATGAGTTTGTGGGAATTAAGCCATGTTATTTTAATTGGATACTTTTTTTTTTCAACTTTCTGTGTATCTTTA
AAATTGTTACTGTGGAATGATTTTCTTGCCAAATATCTTTGTCAGGCAAAATTATTGGCCTCAAGGGAGGTGAAGTAAGCCAGATTTTGGGTGAATTTATGTGGACTTTGGTGAGTTTGTAGTTCTAC
TTTATATTCATAAAGATAGTTTTTTAAAACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCTTTGGAGGAAAGAGTTAAGTGTCCAAGGGTTGTAACAGATATGAGGTCAGAGGGA
GCTCGCCTGGCCTGGACGCTGCCCCTCCACAGCTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTGGACAGAGCTGGGCAGGGCAAGGGAGGGTGGGCCTGGGTTAGTGAGATGCAGGCTGCT
GTATTTTAACCAGTGGTTCTTGGGGAGGGGTGCCTGGAGAATACAAAGTCACTTCCCTTTTTTGAAACAAAACCAATTAGAAAAAAACTACAATTTTTTTGTTTAGTAAAAATAAGAAAATTCTAATG
TCCCTAGTCACAAGGGACCAGTTCCACTTTGAACAGTAGGAACTTAAAAATTTGAAAACATTTGGGGAAAGGGAAAATTGGCTTTCTGTTTAATTGGCAAATGTTCCAGTGGGAGGGTCTGTTTTTGT
TGGGATGTGTTACAGTATATGTACATGTCTATGGACCTGAGTCTTTAAGGAATTTATACATGGTTCAGAAAAGATGGTTGGTAAAATCTTGATTATTTCTTTTTGTTAATTTATCTCAATAAAAGCCC
ACTGGAACTCCAA

hide sequence

RefSeq Acc Id:

XM_017595834 ⟹ XP_017451323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,829,078 - 53,864,538 (+)	NCBI
mRatBN7.2	8	44,932,308 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,925,798 - 48,961,394 (+)	NCBI

Sequence:

show sequence

CCGGGAGGACGGGCGGGTGGCCGCTGAGAGGAGCAGCGGCGGCGGCGGAGAGGAGTGGAACCGA
GGAATGTGGTGTGTGCCCGGTCTGGAGGAGGAGCGGTGGAGTGCTCTGGGCGAGCGGTGTGGTAGACGGGAGCGGGGACGGAGCGGCGGCCGGGACTCCGGAGTGAGGTTGGGAGTGCGAGGCAGCCC
TGTTGGGGGCGGCAGGGCTGTGCTGTCCGGAGACTGGGCTAGGAGAGGACCCGCAGCTGCTCGGTTGCAAGTAGGCCTTGCAGATTGAAGTGAGTGAATTCAGATATAATTCAAGCTTGTTAGAGCGC
TTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTTAACTACTGCTGCTTACCGGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCATATATTGAGCAAGACTTATTTAT
CTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAAGTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAGGACAGAGAACCCTGTTATCATG
GGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGCCGGCCCTGGAGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACAATCAATAATGGCAC
TCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACTGGAAAAAGACTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCACAAAAGGAAATGAGT
TTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATGGGCTGGGAAAAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTAGAGCA
AAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACGGCTGGACCTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAAAT
TTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCACTGGAGGAACCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTGGTGATTGCTACCCCTGGCAGAA
TCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATGATAGTATTGGATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTATTCTCACACTACCT
AAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTGAAAGGGGTGACCCA
GTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACACTCTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGTTGAGTTACTGGCCAAGAAGA
TTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAGGAACATAGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTACCCGA
GGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGAGACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTGATCAC
ATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAACCCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGATGAGA
AACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTTGGATCTGTGACGCATCATTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTATTTTGGAACTATGAAGAGTTAT
ATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAAAAACTGAAAAGAAGAAATGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTTTCGTTGCACTAACTGCTGGTTT
TTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAAAAGAAAGGGAGAAACCCTAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCCGATAGCCGACTCTACTGCATTT
CAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAGCTTACTACTTATTTGTGCAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCACAGCCCGAGGAATCAACAAAGT
CACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCATTTGGTTTCAAGTTGAAGTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTGGACTAGTGATGGTAGCGCCATT
TTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACACTGTAAATACATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGGGCTGAGTAGACGCACCATCGTC
GCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATATGACAAGCCTCTGTGCTCTACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGGCACTGGGTGCAAAGACTTGTCG
GAGCCTTGACCCTCTTTCCTCTGTGGCAAAGCGCGACCCATAGAAAATTGTATGTGTATACTTGTATAAACTTTGTAAATAAGTTTTTTTCTGGGTTCATATATATATATATATAAATATATATATAT
ACATACATATATATATTATTTTTTTTGGATGAAGGTTGCTGGGATTAAGGGATTAGAGTGATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAACACTAAATTCTAAAAAGTGCTTTG
GCCTCTAACTATAGGAAGTAGACCTCTGCAGGGCCTGTGTTGGAAAAGGGCCCAGAAGCCCAGGGCGCCTGTGCGCCACCACACTACTCTTGTAATGTGCATGCAGCGGTCTTAGCAGACAGCAAGGA
AGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTCGAGAAGCTCTGTGGTTTGGCTCTCCTGTCCTAAACGTTTGAGGAACTTCCCAAGTTCCTCAAAGGGGAACAAAGATTAATCTTCCTTGGAGTATGA
GAAGTGTACGGAGTGCAGTCTTAGAGCAGAGAGTGTGAACATGGATTCGTACTTCACTGGACCAGCCAGTACAGCCTCAGCAGGCTTGGCGGTCGTGGAGCTTAGTTATCTGCGGTCACCTCCTGTAG
TGTGTGAGTGAACGAAAGCCCTCTGCCCACCTTGACTTGTACATGTTTGCGGGAATGGGCGACCCCTGAGAGCTGTTAACTCCATGCTGCAGAAAGCTGCTTACCATTCTCGTGCCTGCCGCAGCAAG
AATTGCTGTCTGTCCTTTCTTTCGCATTGTAAATTGCCGGCAGATGCTTTAGGTGGGTAGTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCAGGCAAAAGGAGTGA
GATGAATCAAAACCAGTGAACTTTTTTTTAAAAAAATGTTTTTAATTCCCTTTTAACCCAGTATACTAGGTCAGGAGGCATCTAGGGAACAAAAAAAGCAAAAAACAAAATTTAAAAAAAAAACTGAT
TTTCATATTCCATCACTTTGAAAACCTTAAACCTATGACAAGGTATGTCACGTGTACGCTGCCATGCTTAACTCACCTGAATAAAGGAGTCCGCTATTCCAAGTTGCTTTTTGACTGTGCCTAGTTCT
AAAGCAAAACTATTTGTGACCTGTCCCAAATTCCTTGGGGATCAAAATCCTAAAGATGCCTCCTTACCAGATATAACCCTGACTGTAACAGCTGTAGCAGGAGCTGCACGGTACAAAACCCCAAAAGG
CAAGTCCAGTCAGTGTTGGTTACAAAACAGAAACCAAATTAAGGAAGTCACTTTTTTAGGGAGGGTGGGAATGGGGTCTTAAAAATTCTTTGACCAACAGATCTTGCCCTTGTACCGATGCAGTTCTC
CTCCTTCCTGCCTTTGGCGAGATGAGAGGGATCTCCATGTAGATCAGCAGCAGGAACGGAGTATAAACAAACGTGCTAGCTCGCCAGAGGACATGTGGGTGAGTCAACAAGGTGCAGTCTCTTGCCAA
CCTTGGACTGCTCTGCTAGGTGCCACATGCCTATGAGTCCCTCTTAAAGCACAGACTCCACGTGGAGAGTATTCTCAAGTACAGCGTCTGCTGAGCTGTGGCACTTGGACTAGCTGAGCACCCCACTG
TCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAGCTCGCTTGAGCTGTTAATGGAAAGATGCCCTACTGACCAGGTCAGAACCTGGTTATCTTTTTTTTTTTTTTTTTTTCTTTTTTTCCTTTTTAATCC
CTCTTAATAAGGAATATTGCTACTATTGGAAATTGTCTTTCAGGTTCTTTCCAGTAATTTTTAAAGTAATGGTTATGTTTTGTTTTTTCCCAGTAGTTCATTTGGATAAAAACTATGTCCTATTTTTA
ATATCCACCTCAATGCTTTTAGCCTCTGGTCATAAGCTGTGTAATGAGTCACAGACTGTTACACACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTCTCCCTTAATGTTCTGAACATGAAAAAACTTTC
TTAGAAATGGAATACATTTACCATAAAATGTTTTCCCTGAAAAGGAAAACCTAAGTAATTCTAAATTATTTCCAAATGGGTATCAGCATCATAACAATTGGTTGGCCCAAAATGGTGGGGTGGGGTGG
GTGGTTGTCATAACTCGTTTTCAGAATGAGATGAGGGCATCTTTCCTTGGCCACCTGCTTTGTGGTTGGACACCATTGTGCTCAGTTAGAGCAGAGCACAGCACAAAGCTTTGAAAAGTGTTGGAAAC
AAAACATCTCATTCTGATCATTTGTTTGTTGTTTTTTTTGTTTGTTTTTTGTTTTGTTTTGTTTTTTTTTTAATATGGGTGGGAGGGGAGGGTACTGTGTCCCAAAAGGGAGGGTGTCTGCACTAAGG
ATTTAGAAACACTTTGGAAGCTCATAGCCTCATGGGAAACTGCCTTTAGCCACACTCCTGACCTTTAGATGAGTAACAAAAAGATGGAATGAGTTTGTGGGAATTAAGCCATGTTATTTTAATTGGAT
ACTTTTTTTTTTCAACTTTCTGTGTATCTTTAAAATTGTTACTGTGGAATGATTTTCTTGCCAAATATCTTTGTCAGGCAAAATTATTGGCCTCAAGGGAGGTGAAGTAAGCCAGATTTTGGGTGAAT
TTATGTGGACTTTGGTGAGTTTGTAGTTCTACTTTATATTCATAAAGATAGTTTTTTAAAACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCTTTGGAGGAAAGAGTTAAGTGTC
CAAGGGTTGTAACAGATATGAGGTCAGAGGGAGCTCGCCTGGCCTGGACGCTGCCCCTCCACAGCTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTGGACAGAGCTGGGCAGGGCAAGGGAG
GGTGGGCCTGGGTTAGTGAGATGCAGGCTGCTGTATTTTAACCAGTGGTTCTTGGGGAGGGGTGCCTGGAGAATACAAAGTCACTTCCCTTTTTTGAAACAAAACCAATTAGAAAAAAACTACAATTT
TTTTGTTTAGTAAAAATAAGAAAATTCTAATGTCCCTAGTCACAAGGGACCAGTTCCACTTTGAACAGTAGGAACTTAAAAATTTGAAAACATTTGGGGAAAGGGAAAATTGGCTTTCTGTTTAATTG
GCAAATGTTCCAGTGGGAGGGTCTGTTTTTGTTGGGATGTGTTACAGTATATGTACATGTCTATGGACCTGAGTCTTTAAGGAATTTATACATGGTTCAGAAAAGATGGTTGGTAAAATCTTGATTAT
TTCTTTTTGTTAATTTATCTCAATAAAAGCCCACTGGAACTCCAA

hide sequence

RefSeq Acc Id:

XM_063265965 ⟹ XP_063122035

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,828,876 - 53,864,538 (+)	NCBI


Protein RefSeqs	NP_001102762	(Get FASTA)	NCBI Sequence Viewer
	NP_001421298	(Get FASTA)	NCBI Sequence Viewer
	NP_001421299	(Get FASTA)	NCBI Sequence Viewer
	NP_001421300	(Get FASTA)	NCBI Sequence Viewer
	NP_001421301	(Get FASTA)	NCBI Sequence Viewer
	NP_001421302	(Get FASTA)	NCBI Sequence Viewer
	NP_001421303	(Get FASTA)	NCBI Sequence Viewer
	NP_001421304	(Get FASTA)	NCBI Sequence Viewer
	XP_006243012	(Get FASTA)	NCBI Sequence Viewer
	XP_006243013	(Get FASTA)	NCBI Sequence Viewer
	XP_006243014	(Get FASTA)	NCBI Sequence Viewer
	XP_006243016	(Get FASTA)	NCBI Sequence Viewer
	XP_017451323	(Get FASTA)	NCBI Sequence Viewer
	XP_063122035	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL95329	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000073900
	ENSRNOP00000073900.1
	ENSRNOP00000077264.1

RefSeq Acc Id:

NP_001102762 ⟸ NM_001109292

- UniProtKB:

D3ZD73 (UniProtKB/TrEMBL), A6J406 (UniProtKB/TrEMBL), A0A8I5Y7L2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF
VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL
CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP

hide sequence

RefSeq Acc Id:

XP_006243016 ⟸ XM_006242954

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF
VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL
CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP

hide sequence

RefSeq Acc Id:

XP_006243013 ⟸ XM_006242951

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF
VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL
CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP

hide sequence

RefSeq Acc Id:

XP_006243012 ⟸ XM_006242950

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF
VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL
CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP

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RefSeq Acc Id:

XP_006243014 ⟸ XM_006242952

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF
VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL
CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP

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Protein Domains

DEAD-box RNA helicase Q Helicase ATP-binding Helicase C-terminal

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZD73-F1-model_v2	AlphaFold	D3ZD73	1-483	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13695899

Promoter ID:

EPDNEW_R6422

Type:

initiation region

Name:

Ddx6_1

Description:

DEAD-box helicase 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	48,925,604 - 48,925,664	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-30709	BioCyc
Ensembl Genes	ENSRNOG00000053932	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000063092	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000077445	ENTREZGENE
	ENSRNOT00000077445.2	UniProtKB/TrEMBL
	ENSRNOT00000094720.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	DEAD-like_N	UniProtKB/TrEMBL
	DNA/RNA_helicase_C	UniProtKB/TrEMBL
	DNA/RNA_helicase_DEAD/DEAH_N	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	RNA-helicase_DEAD-box_CS	UniProtKB/TrEMBL
	RNA_helicase_DEAD_Q_motif	UniProtKB/TrEMBL
KEGG Report	rno:500988	UniProtKB/TrEMBL
NCBI Gene	500988	ENTREZGENE
PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	UniProtKB/TrEMBL
Pfam	DEAD	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
PhenoGen	Ddx6	PhenoGen
PROSITE	DEAD_ATP_HELICASE	UniProtKB/TrEMBL
	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
	Q_MOTIF	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000053932	RatGTEx
	ENSRNOG00000063092	RatGTEx
SMART	DEXDc	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8I5Y7L2	ENTREZGENE, UniProtKB/TrEMBL
	A6J406	ENTREZGENE, UniProtKB/TrEMBL
	D3ZD73	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-13	Ddx6	DEAD-box helicase 6	Ddx6	DEAD (Asp-Glu-Ala-Asp) box helicase 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-16	Ddx6	DEAD (Asp-Glu-Ala-Asp) box helicase 6	Ddx6	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-05-27	Ddx6	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	RGD1564560	similar to RCK	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1564560	similar to RCK	RGD1564560_predicted	similar to RCK (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564560_predicted	similar to RCK (predicted)	LOC500988	similar to RCK	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500988	similar to RCK			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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