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Gene: Scrn1 (secernin 1) Rattus norvegicus

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Symbol:

Scrn1

Name:

secernin 1

RGD ID:

1560999

Description:

Predicted to enable cysteine-type exopeptidase activity and dipeptidase activity. Involved in regulation of synaptic vesicle cycle. Is active in presynapse. Orthologous to human SCRN1 (secernin 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-dichloroaniline; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

secernin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SCRN1 (secernin 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Scrn1 (secernin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Scrn1 (secernin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SCRN1 (secernin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SCRN1 (secernin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Scrn1 (secernin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SCRN1 (secernin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SCRN1 (secernin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Scrn1 (secernin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SDR42E1 (short chain dehydrogenase/reductase family 42E, member 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SCRN1 (secernin 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Scrn1 (secernin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10098	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	scrn1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	84,962,450 - 85,024,577 (-)	NCBI		GRCr8
mRatBN7.2	4	83,632,125 - 83,694,225 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	83,632,131 - 83,693,852 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	88,849,973 - 88,909,592 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	84,625,396 - 84,685,023 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	83,045,247 - 83,103,668 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	84,678,978 - 84,740,701 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	84,678,975 - 84,740,909 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	149,338,733 - 149,400,634 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	82,912,923 - 82,971,950 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	78,504,381 - 78,563,156 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scrn1	Rat	pleomorphic xanthoastrocytoma		ISO	SCRN1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Pleomorphic xanthoastrocytoma	ClinVar	PMID:28299358
Scrn1	Rat	prostate cancer		ISO	SCRN1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Malignant tumor of prostate	ClinVar	PMID:23265383

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scrn1	Rat	osteoarthritis		ISO	SCRN1 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:18784066
Scrn1	Rat	Stomach Neoplasms		ISO	SCRN1 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:16367923

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scrn1	Rat	1,2-dichloroethane	increases expression	ISO	Scrn1 (Mus musculus)	6480464	ethylene dichloride results in increased expression of SCRN1 mRNA	CTD	PMID:28960355
Scrn1	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Scrn1 (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of SCRN1 mRNA	CTD	PMID:22206623
Scrn1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of SCRN1 mRNA	CTD	PMID:32109520
Scrn1	Rat	3,4-dichloroaniline	decreases expression	EXP		6480464	3 and 4-dichloroaniline results in decreased expression of SCRN1 mRNA	CTD	PMID:24172598
Scrn1	Rat	3-chloropropane-1,2-diol	increases expression	EXP		6480464	alpha-Chlorohydrin results in increased expression of SCRN1 mRNA	CTD	PMID:28522335
Scrn1	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	Scrn1 (Mus musculus)	6480464	Fenretinide results in increased expression of SCRN1 mRNA	CTD	PMID:28973697
Scrn1	Rat	4-hydroxyphenyl retinamide	decreases expression	ISO	Scrn1 (Mus musculus)	6480464	Fenretinide results in decreased expression of SCRN1 mRNA	CTD	PMID:28973697
Scrn1	Rat	5-aza-2'-deoxycytidine	affects expression	ISO	SCRN1 (Homo sapiens)	6480464	Decitabine affects the expression of SCRN1 mRNA	CTD	PMID:23300844
Scrn1	Rat	5-aza-2'-deoxycytidine	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	Decitabine results in increased expression of SCRN1 mRNA	CTD	PMID:16367923
Scrn1	Rat	aflatoxin B1	decreases expression	EXP		6480464	Aflatoxin B1 results in decreased expression of SCRN1 mRNA	CTD	PMID:23630614 and PMID:25378103
Scrn1	Rat	aflatoxin B1	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	Aflatoxin B1 results in increased expression of SCRN1 mRNA	CTD	PMID:22100608 more ...
Scrn1	Rat	all-trans-retinoic acid	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	Tretinoin results in increased expression of SCRN1 mRNA	CTD	PMID:21934132
Scrn1	Rat	aristolochic acid A	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	aristolochic acid I results in increased expression of SCRN1 protein	CTD	PMID:33212167
Scrn1	Rat	arsenite(3-)	multiple interactions	ISO	SCRN1 (Homo sapiens)	6480464	arsenite inhibits the reaction [G3BP1 protein binds to SCRN1 mRNA]	CTD	PMID:32406909
Scrn1	Rat	atrazine	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	Atrazine results in increased expression of SCRN1 mRNA	CTD	PMID:22378314
Scrn1	Rat	azoxystrobin	decreases expression	ISO	SCRN1 (Homo sapiens)	6480464	azoxystrobin results in decreased expression of SCRN1 mRNA	CTD	PMID:33512557
Scrn1	Rat	benzo[a]pyrene	decreases expression	ISO	Scrn1 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased expression of SCRN1 mRNA	CTD	PMID:22228805
Scrn1	Rat	benzo[a]pyrene	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of SCRN1 mRNA	CTD	PMID:32234424
Scrn1	Rat	benzo[a]pyrene	decreases methylation	ISO	SCRN1 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of SCRN1 exon	CTD	PMID:27901495
Scrn1	Rat	benzo[a]pyrene	affects methylation	ISO	SCRN1 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of SCRN1 5' UTR and Benzo(a)pyrene affects the methylation of SCRN1 promoter	CTD	PMID:27901495
Scrn1	Rat	beta-naphthoflavone	multiple interactions	EXP		6480464	[Diethylnitrosamine co-treated with beta-Naphthoflavone] results in decreased expression of SCRN1 mRNA	CTD	PMID:18164116
Scrn1	Rat	bis(2-ethylhexyl) phthalate	multiple interactions	EXP		6480464	[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of SCRN1 mRNA	CTD	PMID:31199487
Scrn1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of SCRN1 mRNA	CTD	PMID:25181051
Scrn1	Rat	bisphenol A	increases expression	ISO	Scrn1 (Mus musculus)	6480464	bisphenol A results in increased expression of SCRN1 mRNA	CTD	PMID:35479511
Scrn1	Rat	bisphenol A	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	bisphenol A results in increased expression of SCRN1 mRNA and bisphenol A results in increased expression of SCRN1 protein	CTD	PMID:29275510 and PMID:37567409
Scrn1	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of SCRN1 mRNA	CTD	PMID:30816183 more ...
Scrn1	Rat	bisphenol AF	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	bisphenol AF results in increased expression of SCRN1 protein	CTD	PMID:34186270
Scrn1	Rat	Bisphenol B	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	bisphenol B results in increased expression of SCRN1 protein	CTD	PMID:34186270
Scrn1	Rat	Brodifacoum	increases expression	EXP		6480464	bromfenacoum results in increased expression of SCRN1 protein	CTD	PMID:28903499
Scrn1	Rat	butanal	decreases expression	ISO	SCRN1 (Homo sapiens)	6480464	butyraldehyde results in decreased expression of SCRN1 mRNA	CTD	PMID:26079696
Scrn1	Rat	Butylbenzyl phthalate	multiple interactions	EXP		6480464	[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of SCRN1 mRNA	CTD	PMID:31199487
Scrn1	Rat	cadmium atom	multiple interactions	ISO	Scrn1 (Mus musculus)	6480464	[Tetradecanoylphorbol Acetate co-treated with [Cadmium Chloride results in increased abundance of Cadmium]] affects the expression of SCRN1 mRNA	CTD	PMID:31904401
Scrn1	Rat	cadmium dichloride	multiple interactions	ISO	Scrn1 (Mus musculus)	6480464	[Tetradecanoylphorbol Acetate co-treated with [Cadmium Chloride results in increased abundance of Cadmium]] affects the expression of SCRN1 mRNA	CTD	PMID:31904401
Scrn1	Rat	cadmium dichloride	decreases expression	ISO	SCRN1 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of SCRN1 mRNA	CTD	PMID:38568856
Scrn1	Rat	carbon nanotube	decreases expression	ISO	Scrn1 (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681
Scrn1	Rat	carbon nanotube	increases expression	ISO	Scrn1 (Mus musculus)	6480464	Nanotubes and Carbon analog results in increased expression of SCRN1 mRNA	CTD	PMID:25620056
Scrn1	Rat	chlorpyrifos	increases expression	ISO	Scrn1 (Mus musculus)	6480464	Chlorpyrifos results in increased expression of SCRN1 mRNA	CTD	PMID:37019170
Scrn1	Rat	cisplatin	affects response to substance	ISO	SCRN1 (Homo sapiens)	6480464	SCRN1 protein affects the susceptibility to Cisplatin	CTD	PMID:16217747
Scrn1	Rat	cisplatin	affects expression	ISO	SCRN1 (Homo sapiens)	6480464	Cisplatin affects the expression of SCRN1 mRNA	CTD	PMID:23300844
Scrn1	Rat	cobalt dichloride	decreases expression	ISO	SCRN1 (Homo sapiens)	6480464	cobaltous chloride results in decreased expression of SCRN1 mRNA	CTD	PMID:19320972
Scrn1	Rat	copper(II) sulfate	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	Copper Sulfate results in increased expression of SCRN1 mRNA	CTD	PMID:19549813
Scrn1	Rat	cyclosporin A	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	Cyclosporine results in increased expression of SCRN1 mRNA	CTD	PMID:20106945
Scrn1	Rat	cyclosporin A	decreases expression	ISO	SCRN1 (Homo sapiens)	6480464	Cyclosporine results in decreased expression of SCRN1 mRNA	CTD	PMID:27989131
Scrn1	Rat	deguelin	decreases expression	ISO	SCRN1 (Homo sapiens)	6480464	deguelin results in decreased expression of SCRN1 mRNA	CTD	PMID:33512557
Scrn1	Rat	dibutyl phthalate	decreases expression	ISO	Scrn1 (Mus musculus)	6480464	Dibutyl Phthalate results in decreased expression of SCRN1 mRNA	CTD	PMID:21266533
Scrn1	Rat	dibutyl phthalate	multiple interactions	EXP		6480464	[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of SCRN1 mRNA	CTD	PMID:31199487
Scrn1	Rat	dibutyl phthalate	increases expression	EXP		6480464	Dibutyl Phthalate results in increased expression of SCRN1 mRNA	CTD	PMID:21266533
Scrn1	Rat	dichloroacetic acid	decreases expression	ISO	Scrn1 (Mus musculus)	6480464	Dichloroacetic Acid results in decreased expression of SCRN1 mRNA	CTD	PMID:28962523
Scrn1	Rat	diethyl phthalate	multiple interactions	EXP		6480464	[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of SCRN1 mRNA	CTD	PMID:31199487
Scrn1	Rat	diisobutyl phthalate	multiple interactions	EXP		6480464	[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of SCRN1 mRNA	CTD	PMID:31199487
Scrn1	Rat	diisononyl phthalate	multiple interactions	EXP		6480464	[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate co-treated with diisononyl phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] results in decreased expression of SCRN1 mRNA	CTD	PMID:31199487
Scrn1	Rat	diuron	decreases expression	EXP		6480464	Diuron metabolite results in decreased expression of SCRN1 mRNA	CTD	PMID:24172598
Scrn1	Rat	endosulfan	decreases expression	EXP		6480464	Endosulfan results in decreased expression of SCRN1 mRNA	CTD	PMID:29391264
Scrn1	Rat	entinostat	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	entinostat results in increased expression of SCRN1 mRNA	CTD	PMID:27188386
Scrn1	Rat	ethanol	affects splicing	ISO	Scrn1 (Mus musculus)	6480464	Ethanol affects the splicing of SCRN1 mRNA	CTD	PMID:30319688
Scrn1	Rat	folic acid	multiple interactions	ISO	Scrn1 (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of SCRN1 mRNA	CTD	PMID:22206623
Scrn1	Rat	furan	increases methylation	EXP		6480464	furan results in increased methylation of SCRN1 gene	CTD	PMID:22079235
Scrn1	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of SCRN1 mRNA	CTD	PMID:33387578
Scrn1	Rat	glyphosate	increases expression	ISO	Scrn1 (Mus musculus)	6480464	Glyphosate results in increased expression of SCRN1 mRNA	CTD	PMID:35489704
Scrn1	Rat	hyaluronic acid	multiple interactions	EXP		6480464	[Hyaluronic Acid analog co-treated with Hydrogen Peroxide] results in decreased expression of SCRN1 protein	CTD	PMID:23178681
Scrn1	Rat	hyaluronic acid	decreases expression	EXP		6480464	Hyaluronic Acid analog results in decreased expression of SCRN1 protein	CTD	PMID:23178681
Scrn1	Rat	hydrogen peroxide	affects expression	ISO	SCRN1 (Homo sapiens)	6480464	Hydrogen Peroxide affects the expression of SCRN1 mRNA	CTD	PMID:20044591
Scrn1	Rat	hydrogen peroxide	multiple interactions	EXP		6480464	[Hyaluronic Acid analog co-treated with Hydrogen Peroxide] results in decreased expression of SCRN1 protein	CTD	PMID:23178681
Scrn1	Rat	indole-3-methanol	affects expression	EXP		6480464	indole-3-carbinol affects the expression of SCRN1 mRNA	CTD	PMID:21396975
Scrn1	Rat	ivermectin	decreases expression	ISO	SCRN1 (Homo sapiens)	6480464	Ivermectin results in decreased expression of SCRN1 protein	CTD	PMID:32959892
Scrn1	Rat	manganese atom	affects expression	EXP		6480464	Manganese affects the expression of SCRN1 protein	CTD	PMID:24885898
Scrn1	Rat	manganese(0)	affects expression	EXP		6480464	Manganese affects the expression of SCRN1 protein	CTD	PMID:24885898
Scrn1	Rat	miconazole	increases expression	ISO	Scrn1 (Mus musculus)	6480464	Miconazole results in increased expression of SCRN1 mRNA	CTD	PMID:27462272
Scrn1	Rat	N-nitrosodiethylamine	multiple interactions	EXP		6480464	[Diethylnitrosamine co-treated with beta-Naphthoflavone] results in decreased expression of SCRN1 mRNA	CTD	PMID:18164116
Scrn1	Rat	N-Nitrosopyrrolidine	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	N-Nitrosopyrrolidine results in increased expression of SCRN1 mRNA	CTD	PMID:32234424
Scrn1	Rat	O-methyleugenol	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	methyleugenol results in increased expression of SCRN1 mRNA	CTD	PMID:32234424
Scrn1	Rat	ozone	multiple interactions	ISO	SCRN1 (Homo sapiens)	6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of SCRN1 mRNA	CTD	PMID:35430440
Scrn1	Rat	paracetamol	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	Acetaminophen results in increased expression of SCRN1 mRNA	CTD	PMID:26690555
Scrn1	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of SCRN1 mRNA	CTD	PMID:33387578
Scrn1	Rat	phenobarbital	affects expression	ISO	SCRN1 (Homo sapiens)	6480464	Phenobarbital affects the expression of SCRN1 mRNA	CTD	PMID:19084549
Scrn1	Rat	phenobarbital	decreases expression	ISO	Scrn1 (Mus musculus)	6480464	Phenobarbital results in decreased expression of SCRN1 mRNA	CTD	PMID:25270620
Scrn1	Rat	phorbol 13-acetate 12-myristate	multiple interactions	ISO	Scrn1 (Mus musculus)	6480464	[Tetradecanoylphorbol Acetate co-treated with [Cadmium Chloride results in increased abundance of Cadmium]] affects the expression of SCRN1 mRNA	CTD	PMID:31904401
Scrn1	Rat	picoxystrobin	decreases expression	ISO	SCRN1 (Homo sapiens)	6480464	picoxystrobin results in decreased expression of SCRN1 mRNA	CTD	PMID:33512557
Scrn1	Rat	pyrimidifen	decreases expression	ISO	SCRN1 (Homo sapiens)	6480464	pyrimidifen results in decreased expression of SCRN1 mRNA	CTD	PMID:33512557
Scrn1	Rat	resveratrol	multiple interactions	ISO	SCRN1 (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in increased expression of SCRN1 mRNA	CTD	PMID:23557933
Scrn1	Rat	rotenone	decreases expression	ISO	SCRN1 (Homo sapiens)	6480464	Rotenone results in decreased expression of SCRN1 mRNA	CTD	PMID:33512557
Scrn1	Rat	SB 431542	multiple interactions	ISO	SCRN1 (Homo sapiens)	6480464	[LDN 193189 co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide co-treated with FGF2 protein] results in increased expression of SCRN1 protein	CTD	PMID:37664457
Scrn1	Rat	tamoxifen	increases expression	ISO	Scrn1 (Mus musculus)	6480464	Tamoxifen results in increased expression of SCRN1 mRNA	CTD	PMID:25123088
Scrn1	Rat	tetrachloromethane	affects expression	ISO	Scrn1 (Mus musculus)	6480464	Carbon Tetrachloride affects the expression of SCRN1 mRNA	CTD	PMID:17484886
Scrn1	Rat	tetrachloromethane	decreases expression	EXP		6480464	Carbon Tetrachloride results in decreased expression of SCRN1 mRNA	CTD	PMID:30690589 and PMID:31150632
Scrn1	Rat	tetrachloromethane	increases methylation	EXP		6480464	Carbon Tetrachloride results in increased methylation of SCRN1 promoter	CTD	PMID:30690589
Scrn1	Rat	titanium dioxide	decreases methylation	ISO	Scrn1 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of SCRN1 gene and titanium dioxide results in decreased methylation of SCRN1 promoter	CTD	PMID:35295148
Scrn1	Rat	topotecan	affects response to substance	ISO	SCRN1 (Homo sapiens)	6480464	SCRN1 protein affects the susceptibility to Topotecan	CTD	PMID:16217747
Scrn1	Rat	trimellitic anhydride	decreases expression	ISO	Scrn1 (Mus musculus)	6480464	trimellitic anhydride results in decreased expression of SCRN1 mRNA	CTD	PMID:19042947
Scrn1	Rat	triphenyl phosphate	affects expression	ISO	SCRN1 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of SCRN1 mRNA	CTD	PMID:37042841
Scrn1	Rat	triptonide	increases expression	ISO	Scrn1 (Mus musculus)	6480464	triptonide results in increased expression of SCRN1 mRNA	CTD	PMID:33045310
Scrn1	Rat	valproic acid	decreases expression	ISO	SCRN1 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of SCRN1 mRNA	CTD	PMID:29154799
Scrn1	Rat	valproic acid	increases expression	ISO	Scrn1 (Mus musculus)	6480464	Valproic Acid results in increased expression of SCRN1 mRNA	CTD	PMID:21427059
Scrn1	Rat	valproic acid	affects expression	ISO	SCRN1 (Homo sapiens)	6480464	Valproic Acid affects the expression of SCRN1 mRNA	CTD	PMID:25979313
Scrn1	Rat	valproic acid	increases expression	ISO	SCRN1 (Homo sapiens)	6480464	Valproic Acid results in increased expression of SCRN1 mRNA	CTD	PMID:23179753 and PMID:27188386
Scrn1	Rat	vorinostat	decreases expression	ISO	SCRN1 (Homo sapiens)	6480464	vorinostat results in decreased expression of SCRN1 protein	CTD	PMID:20543569

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scrn1	Rat	exocytosis	involved_in	IEA	UniProtKB-KW:KW-0268	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Scrn1	Rat	proteolysis	involved_in	IEA	InterPro:IPR005322	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Scrn1	Rat	regulation of synaptic vesicle cycle	involved_in	IDA		155230704	PMID:31441084	SynGO
Scrn1	Rat	regulation of synaptic vesicle cycle	involved_in	IMP		155230704	PMID:31441084	SynGO

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scrn1	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Scrn1	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Scrn1	Rat	nuclear membrane	located_in	ISO	SCRN1 (Homo sapiens)	1624291	PMID:10942595	RGD	PMID:10942595
Scrn1	Rat	nuclear membrane	located_in	IEA	UniProtKB:Q12765 and ensembl:ENSP00000242059	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Scrn1	Rat	nucleus	located_in	ISO	SCRN1 (Homo sapiens)	1624291	PMID:10942595	RGD	PMID:10942595
Scrn1	Rat	nucleus	located_in	IEA	UniProtKB:Q12765 and ensembl:ENSP00000242059	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Scrn1	Rat	presynapse	is_active_in	IDA		155230704	PMID:31441084	SynGO

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scrn1	Rat	cysteine-type exopeptidase activity	enables	IEA	InterPro:IPR005322	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Scrn1	Rat	dipeptidase activity	enables	IEA	InterPro:IPR005322	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Scrn1	Rat	protein binding	enables	ISO	SCRN1 (Homo sapiens)	1624291	UniProtKB:P10636-8 more ...	RGD	PMID:25416956 more ...
Scrn1	Rat	protein binding	enables	ISO	SCRN1 (Homo sapiens) and UniProtKB:Q12765-2	1624291	UniProtKB:P17030 more ...	RGD	PMID:32296183 and PMID:32814053

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	VAP-SCRN1 interaction regulates dynamic endoplasmic reticulum remodeling and presynaptic function.	Lindhout FW, etal., EMBO J. 2019 Oct 15;38(20):e101345. doi: 10.15252/embj.2018101345. Epub 2019 Aug 23.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:10942595	PMID:15489334

Scrn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	84,962,450 - 85,024,577 (-)	NCBI		GRCr8
mRatBN7.2	4	83,632,125 - 83,694,225 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	83,632,131 - 83,693,852 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	88,849,973 - 88,909,592 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	84,625,396 - 84,685,023 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	83,045,247 - 83,103,668 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	84,678,978 - 84,740,701 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	84,678,975 - 84,740,909 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	149,338,733 - 149,400,634 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	82,912,923 - 82,971,950 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	78,504,381 - 78,563,156 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

SCRN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	29,920,103 - 29,990,289 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	29,920,104 - 29,990,289 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	29,959,719 - 30,029,905 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	29,926,253 - 29,995,902 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	29,732,967 - 29,802,617	NCBI
Celera	7	29,949,107 - 30,019,299 (-)	NCBI		Celera
Cytogenetic Map	7	p14.3	NCBI
HuRef	7	29,841,403 - 29,911,853 (-)	NCBI		HuRef
CHM1_1	7	29,959,818 - 30,030,015 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	30,057,799 - 30,127,994 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	30,009,542 - 30,079,734 (-)	NCBI

Scrn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	54,451,813 - 54,543,332 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	54,478,158 - 54,543,474 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	54,474,794 - 54,566,517 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	54,501,173 - 54,566,489 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	54,458,810 - 54,516,376 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	54,438,394 - 54,495,960 (-)	NCBI		MGSCv36	mm8
Celera	6	55,037,741 - 55,095,223 (-)	NCBI		Celera
Cytogenetic Map	6	B3	NCBI
cM Map	6	26.98	NCBI

Scrn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	31,231,119 - 31,298,152 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955410	31,231,418 - 31,299,772 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCRN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	34,738,710 - 34,807,721 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	83,063,432 - 83,132,450 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	30,550,199 - 30,619,197 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	30,667,229 - 30,736,033 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	30,667,229 - 30,736,129 (-)	Ensembl	panpan1.1		panPan2

SCRN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	42,721,057 - 42,804,825 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	42,724,585 - 42,805,843 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	42,154,212 - 42,216,778 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	42,662,780 - 42,725,452 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	42,662,780 - 42,747,609 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	42,779,572 - 42,842,348 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	42,457,144 - 42,520,683 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	42,815,926 - 42,878,509 (-)	NCBI		UU_Cfam_GSD_1.0

Scrn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	87,010,767 - 87,068,955 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936478	6,222,018 - 6,280,622 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936478	6,222,498 - 6,281,162 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCRN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	42,924,409 - 42,987,923 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	42,924,607 - 42,987,926 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	47,316,899 - 47,378,272 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCRN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	28,386,910 - 28,456,556 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	28,408,528 - 28,456,558 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	76,228,134 - 76,301,224 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scrn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624739	802,425 - 866,982 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624739	802,642 - 939,884 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Scrn1
537 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	28
Count of miRNA genes:	25
Interacting mature miRNAs:	27
Transcripts:	ENSRNOT00000013088
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	38465774	146803430	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	61697658	103194791	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	40433388	85433388	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	43457976	88457976	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	26775591	168368347	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	78881294	117676292	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	57486946	102486946	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	70362013	132642728	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	61697658	115089733	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82798864	152731274	Rat
724522	Bp146	Blood pressure QTL 146	2.2	0.0021	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	73630210	118630210	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	40433414	85433414	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	81192555	126192555	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	44463908	148090542	Rat
2300179	Bmd50	Bone mineral density QTL 50	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	4	60928534	105928534	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	50119848	146803430	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	62933508	114921294	Rat
61364	Iddm2	Insulin dependent diabetes mellitus QTL 2			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78885890	102684881	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	39524264	116179656	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	56647873	149491524	Rat
1578657	Bss12	Bone structure and strength QTL 12	8.9		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	4	60220938	105220938	Rat
1578658	Bss13	Bone structure and strength QTL 13	8		femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	4	60220938	105220938	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
2302051	Pia28	Pristane induced arthritis QTL 28	5.3	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	73630210	118630210	Rat
2306794	Ean2	Experimental allergic neuritis QTL 2	6.4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	4	83428419	95853334	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	10814170	91360527	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	45456990	146803430	Rat
738015	Pia9	Pristane induced arthritis QTL 9	4.5	0.048	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	80694870	125694870	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	73169846	132642728	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	65882107	96130297	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	36303261	103194984	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	44463908	148090542	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	70808386	115808386	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	78878504	123878504	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	62277855	128289560	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	62879517	107879517	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	58432133	92991462	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	56698790	126192555	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	81006124	120102625	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	57114432	91360801	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
7394826	Bw126	Body weight QTL 126		0.002	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	62933269	87483707	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	32583980	114627242	Rat

D4Got63

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	83,676,041 - 83,676,329 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	84,722,895 - 84,723,182	NCBI	Rnor6.0
Rnor_5.0	4	149,382,655 - 149,382,942	UniSTS	Rnor5.0
RGSC_v3.4	4	82,953,542 - 82,953,830	RGD	RGSC3.4
RGSC_v3.4	4	82,953,543 - 82,953,830	UniSTS	RGSC3.4
RGSC_v3.1	4	83,238,165 - 83,238,452	RGD
Celera	4	78,544,992 - 78,545,275	UniSTS
RH 3.4 Map	4	523.2	RGD
RH 3.4 Map	4	523.2	UniSTS
Cytogenetic Map	4	q24	UniSTS

BE095530

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	83,651,456 - 83,651,609 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	84,698,310 - 84,698,462	NCBI	Rnor6.0
Rnor_5.0	4	149,358,070 - 149,358,222	UniSTS	Rnor5.0
RGSC_v3.4	4	82,928,958 - 82,929,110	UniSTS	RGSC3.4
Celera	4	78,520,415 - 78,520,567	UniSTS
RH 3.4 Map	4	523.8	UniSTS
Cytogenetic Map	4	q24	UniSTS

AU048678

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	83,681,262 - 83,681,511 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	84,728,114 - 84,728,361	NCBI	Rnor6.0
Rnor_5.0	4	149,387,874 - 149,388,121	UniSTS	Rnor5.0
RGSC_v3.4	4	82,958,929 - 82,959,176	UniSTS	RGSC3.4
Celera	4	78,550,246 - 78,550,457	UniSTS
Cytogenetic Map	4	q24	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001025063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013088 ⟹ ENSRNOP00000013088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	83,632,131 - 83,693,852 (-)	Ensembl
Rnor_6.0 Ensembl	4	84,678,975 - 84,740,909 (-)	Ensembl

RefSeq Acc Id:

NM_001025063 ⟹ NP_001020234

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	84,965,750 - 85,024,173 (-)	NCBI
mRatBN7.2	4	83,635,427 - 83,693,872 (-)	NCBI
Rnor_6.0	4	84,682,278 - 84,740,701 (-)	NCBI
Rnor_5.0	4	149,338,733 - 149,400,634 (-)	NCBI
RGSC_v3.4	4	82,912,923 - 82,971,950 (-)	RGD
Celera	4	78,504,381 - 78,563,156 (-)	RGD

Sequence:

show sequence

GACCAAACCAGCTGTTAGCAGGGGGCTGGAGAGCCTGGAGTCTGGGGAGCTGGAGCGCCAGCGGTCTTCTGCGCTACTGATGCGGAGGCTGTAACCTAGCTGCCGCAGCGCCCCCAACTCCGCAATCG
CAGCATCAGCACCGCTGGACCCGGCTGGAGCCGGCTGCTTGGCAGGATGTCTGGTGCACCTCCGAGTTACTCCTTCGTGGCTTTGCCACCTCGAGCCAAGGATGGTCTGGTGGTGTTTGGGAAAAATT
CAGCGCGGCCCAGAGATGAAGTGCAGGAGGTCGTGTACTTCCCAGCTGTTGACCATGAAGCTGAGAGCAAAGTTGAGTGCACTTACATCTCAATTGACCAAGTTCCCAGGACCCACGCCATAGTGATA
AGCAGACCTGCCTGGCTCTGGGGGGCAGAAATGGGAGCCAATGAACATGGGGTATGCATAGCCAATGAAGCCATCAATGCCAGAGAACCAGCTGCTGAGACAGAAGCCTTACTGGGGATGGATCTGGT
CAGGCTTGGTTTAGAACGAGGGACAACAGCTAAAGAAGCCTTAGACATCATCGTCTCCTTATTGGATGAGCATGGACAAGGTGGAAATTATTATGAAGATGCCCATTCCTGCCATAGCTTCCAAAGTG
CATATCTGCTGGTGGATCGTGATGAAGCCTGGGTGCTGGAGACTGTAGGGAAGTATTGGGCTGCTGAGAGAATCACAGAGGGAGTGAGGTGCATTTGCAATCACCTTTCACTCACTACTAAGATGGAC
GAAGAACACCCAGAACTCAGGACGTATGCTCAGAGTCAAGGCTGGTGGACCGGAGAGGATGAATTCAATTTTGCCCAAGTCTTTTCTCCCGCTGATGACCATTTGGACTGCTGTGCAGGCAAAGACAG
CTTAGAAAAGCAAGAAGAAAGCATCACGGTGCAGACGATGATTAACATCTTACGAGATAAAGCCAGTGGCGTTTGCATAGATTCTGAGTCTTTCCTTACCACAGCCAGTATAGTGTCTGTCCTGCCTC
AGAACAGAAGTTCACCGTGCATTCACTACTTCACCGGGACCCCAGATCCTTCCAGGTCCATATTCAAGCCTTTCATCTTTGTTGATGATGTAAAACTTGTCCCCAAAGCACAGTCGCCCTGTTTTGGG
GACGATGACCCAGCCAAAAAGGAACCTCGGTTCCAGGAGAAGCCAGACCGGCGGCACGAGCTGTACAAGGCACATGAGTGGGCACGTGCTGTCATCGAGAGCGACCAGGAGCAAGGCCGCACACTGAG
GAAGACCATGCTGGAGTTGGAGAAGCAAGGCTTGGAGGCCATGGAAGAGATTCTGAGCAGCCCTGAACCCCCAGACCCTGCTGAGGTGGGGGACCTTTTCTATGACTGTGTGGACACCGAGATGAAAT
TCTTTAAGTGATGTAAGCACCCTCGCCCTTACTTAAAACTTCCCACCCGACTAAATTACCAGCAGATAAACACTCTTCTGTTTGAGTAAAACGAGAGTTACCATGTTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006236512 ⟹ XP_006236574

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	84,962,450 - 85,023,446 (-)	NCBI
mRatBN7.2	4	83,632,125 - 83,693,167 (-)	NCBI
Rnor_6.0	4	84,678,978 - 84,739,569 (-)	NCBI
Rnor_5.0	4	149,338,733 - 149,400,634 (-)	NCBI

Sequence:

show sequence

CAGCATGAAAAATCAGGCCAGGCGGAACCCTAGCAGACCACAGCCAAGCACAGCTGCCCCCAGA
CTTGAGCTGCGGAGAGAAACAGCAGGAGGATGTCTGGTGCACCTCCGAGTTACTCCTTCGTGGCTTTGCCACCTCGAGCCAAGGATGGTCTGGTGGTGTTTGGGAAAAATTCAGCGCGGCCCAGAGAT
GAAGTGCAGGAGGTCGTGTACTTCCCAGCTGTTGACCATGAAGCTGAGAGCAAAGTTGAGTGCACTTACATCTCAATTGACCAAGTTCCCAGGACCCACGCCATAGTGATAAGCAGACCTGCCTGGCT
CTGGGGGGCAGAAATGGGAGCCAATGAACATGGGGTATGCATAGCCAATGAAGCCATCAATGCCAGAGAACCAGCTGCTGAGACAGAAGCCTTACTGGGGATGGATCTGGTCAGGCTTGGTTTAGAAC
GAGGGACAACAGCTAAAGAAGCCTTAGACATCATCGTCTCCTTATTGGATGAGCATGGACAAGGTGGAAATTATTATGAAGATGCCCATTCCTGCCATAGCTTCCAAAGTGCATATCTGCTGGTGGAT
CGTGATGAAGCCTGGGTGCTGGAGACTGTAGGGAAGTATTGGGCTGCTGAGAGAATCACAGAGGGAGTGAGGTGCATTTGCAATCACCTTTCACTCACTACTAAGATGGACGAAGAACACCCAGAACT
CAGGACGTATGCTCAGAGTCAAGGCTGGTGGACCGGAGAGGATGAATTCAATTTTGCCCAAGTCTTTTCTCCCGCTGATGACCATTTGGACTGCTGTGCAGGCAAAGACAGCTTAGAAAAGCAAGAAG
AAAGCATCACGGTGCAGACGATGATTAACATCTTACGAGATAAAGCCAGTGGCGTTTGCATAGATTCTGAGTCTTTCCTTACCACAGCCAGTATAGTGTCTGTCCTGCCTCAGAACAGAAGTTCACCG
TGCATTCACTACTTCACCGGGACCCCAGATCCTTCCAGGTCCATATTCAAGCCTTTCATCTTTGTTGATGATGTAAAACTTGTCCCCAAAGCACAGTCGCCCTGTTTTGGGGACGATGACCCAGCCAA
AAAGGAACCTCGGTTCCAGGAGAAGCCAGACCGGCGGCACGAGCTGTACAAGGCACATGAGTGGGCACGTGCTGTCATCGAGAGCGACCAGGAGCAAGGCCGCACACTGAGGAAGACCATGCTGGAGT
TGGAGAAGCAAGGCTTGGAGGCCATGGAAGAGATTCTGAGCAGCCCTGAACCCCCAGACCCTGCTGAGGTGGGGGACCTTTTCTATGACTGTGTGGACACCGAGATGAAATTCTTTAAGTGATGTAAG
CACCCTCGCCCTTACTTAAAACTTCCCACCCGACTAAATTACCAGCAGATAAACACTCTTCTGTTTGAGTAAAACGAGAGTTACCATGTTACCATGTGGCCTCCTTGTGTCTAAATGTTCCCTCTGTT
CAGCTTAGCAACCCCCTCCCCTTTGCTATGTAACGCGATCCCACTTGCCTCTTGCTCCATTGTGTGATAAGCTATGGGCTTGAAGATGTTCTTGTATTTCAGTGACAATGGACACCTTAGCTTCTTAG
GAGGAACTAGGGTTCCCTCCGCCTTGGACAGGGCTGTGGGGACACACTGGTGGGAAAGACAAGAGCTGTGAAGAGCCTGGCCCCTCTCTAGATAGTGGTTTCTTTAAGGTTAGCAAAAGGCTTTTGTT
CATACCAAAGGCTCTTGTGTGTGCAGATGGGGGAAGGGTCCCCCCAGCTTCCCTCCACTGAGCACAGGCCTGTGTGTAGCTCACAGTCCCCACAAGCATGTCCTGGGAAACAAAGCCAACGGGAAGGA
GCAGAGGACCCATGGGTACAGTCCCAGCTCTGCTCCAGTCTATGTGACTTTTGAAAGACCTTTGTTCTGTGAGCTGTGATCATGTGCAGTGGACCAGACCTGCTTCCACCTGCAGGAGAGCTGGGTAT
CCACATTAGCCGCACCTCCCCATCCAGCACTGCACCCACCTGAGGACATTAACTGGGATTTGATGGCCAGCAACTTGTATGCGATTCATTAAGTGGCCCTGGCAGAGCAGCCACACCCAGCTGCAAAT
CTCGGCCAATGAGGGAAAGGAAAGGGTCGATCTTGTCTGCTGAGCGCTACTGGGCCTGGGATCTGAGCAGCCACGGTCTCAGCAGAGCCCAAAATTAACCTAATTTGTTTCCAGCATCGGTGTGTTTG
CACAAAGGATTTGACGCCACAGGAGTGTGTGAGGAAGACAGGGTGGGCCGAGGCCAGAGGCAGTGAGACATTTATCCACTGAACAGTTAACCCACCCACTGCCTAGTTAACTAGGTCCCACAAATCTG
TGTGCTGGGCACCTGACCTCCAGGATCTCCTCTATTTGTTCTCACGCCCCGCTGCCTGACAGATGCCTTTGGACAATGTCTAGAATGGGAGAGAGGTACAGGTGCCTATGCATTGCCACTGTCCATGA
CTGAAGGAGCCAGGGGTGTAAAGATGACTGGCAGAGGTATAGATTAGAGGAGCAGCTAGTGAGTGTGTGTTGTGGGGGCCTAATTATAGGTCCTCATTCTTGTCAGGGCTGAGCAAAGAGAAACTATC
AGTGATCTCAGGCATGGCCTCATTGCCTTCTTGGCTGCAGTGTCCTGGGCTGTGAGAACTGGCAGGGAACTGAGCCCTCATTTCACAGTGTGATGCTGGCTACAGGTTTTATTGGGACAAATCTTGCT
TCTCTTCCAACCCTTGTTTGAGAGGGGTTGGGGAGGTGTGCTGTGAGCCCTTCTCTGAACCATTTTGTGGGTTCCACACATAAGCAAATGGCAAAGCATGAGAGGTGGGACAAATTCACGTTAACGTG
GCATCTCTTGCTGATGACTAGAGGGTCTCAGGCAGAGCAGCTAAGCTGAAAGTGCCCTGTAGGTGCAAAGGGGAAGAGGGTGAGGTTTGAGGAGGAAGCGGTTGCCTGTCCAACCTCACCTGCTGAGC
TATTTAAGGAAGGTGATGCAGAAGGCCGTCCTGTGGTTTCCCTGTGTGGTCTCCCCCCTGCCTCTGAGGCCAGCTCAGCAGATCTGACCTGCCTGGGGCAAGCCAGGTGATTCAGGGTTTGATCAGAA
GTCTAGTGATAGCAAACGCCACAGACACCTTCTCTCATTACTTTGGCCAAGGTCACAGATGGCTGTGACAACTTGATGTCATTACTCAGGTGAGCACTGAAAACACAGGGGCTGTCTTTATAATTGAC
TTTAGTCCAGCATCAGACAAAGACCAGTTCTATGGAGCATTGTACAGCTCAACCTATGCTGTCATTGTACCACCAGAGGGCGCAGTAGCCCTCTGTGGGCCACCTGGCACATTAAAAGGTTTTCTCCT
CAGGCAATGGATAAGAGATGAGATATGAAAGCTTTGCTTTCTGGGAATGGATGGGAACAGACAAGAGAAGAGAATCTGGCGAGGTGCCTGCACGTACTTTAGTGAGTTTATCAAAATTAACAACAGAA
ATGATACTGGATTTTGAACAAGCAGACATAGGAGAATATTTGTTTTAAAACGCAGCTAACAGATTTCTTGTTGAAGAAACATTCTTACAGGGGTAATGTCTCAATCAGGGGTCAATTTTATGAACAAC
ATGTAGAAAATGGGTATTCAAGAATGTCGAAGATTGCTCTGTAAATAACTTCCCAGAAGACCACCCTATATCTATTAAGCCTGAGGGCGGGGGATCCCGAGCACACTTTGGGCAGAAATAAGTCATGA
TCATTGAGGACAGGCTGCCTGCCCACCTGCCCACCTGCCCACCTGCCCACCTGCCCACCTGCCCACCTGCCCACCTGCCCCCCCTACCCCATAGACTCTAACATAAGCTAGCTAGTGTTGTGTAGATG
GGATTTACATAAGTGAAAGTGGCAGCGTAGCTGGGGGCAGACACTTGAGTTGCATAAGATAGTAAAGCGGAAGTAGTATGTTATCATTCTTGGGAGTGTCTGGAAGCTGTGGTAGGATAAACGCATCT
GATAAACGCTGTGGAGACTTAGCCCAACACAAGATTCAGTGTTTGTAAGAGTCCGCCTCACAAGCTAATGAAGCAGGTGTATGCCTACTAGAGCTCTGTGGCAAAGTTCCCTTACTCTCCGGTGAGTC
AGTAGCTATAAAAATAATAGTCACCACAAAGCACTGTCACCTCACATTGATACAGGTGATGCCACTCTGGAAGGTCCTCAGGGCAGCCAGGCCTGCATGCCTTCAAATTATTGGCTGCATTCTTGTAT
TGCAACCATCTTCAATTGAGAGCTCAGCTTTGGGAGAAAACACACCATGGAGGGAGAGGTGTGGCAGGTGTGGGTCGAGCATCCCAGCTCTCCTGTGCCTCCTGCAGCCGTAGTGTTTCATTCCACAC
GGCACCGAGCCCCAACTCCTGTCCTGTGGTATGTGTCAAATGTGTTTTATTGGGCTGCTGCCAACCATCTTGAACTGTCATGCAGAGAATTCTTGCAGGAATCAATAAGTTCTGTCTCTAACCATGTT
GTGAGAACCGAATCGCCATAGCTGGAGCAGTGTAACAGAAAGCCTTTGTTCCTGGGGGTGGGGGAGACTGACTATGTGGTCTTAACAGCCTTTTGTACAAATACCTTCAAATCAAACGATGTCTCTAT
CCAGTGCTTGCCCTCAGAGTGTCTTTAAATGCACCAAGTGTACAATAAAAGCATTGAAGTCAA

hide sequence

RefSeq Acc Id:

XM_039108254 ⟹ XP_038964182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	84,962,450 - 85,024,577 (-)	NCBI
mRatBN7.2	4	83,632,125 - 83,694,225 (-)	NCBI

RefSeq Acc Id:

XM_063286615 ⟹ XP_063142685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	84,969,054 - 85,024,303 (-)	NCBI


Protein RefSeqs	NP_001020234	(Get FASTA)	NCBI Sequence Viewer
	XP_006236574	(Get FASTA)	NCBI Sequence Viewer
	XP_038964182	(Get FASTA)	NCBI Sequence Viewer
	XP_063142685	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79152	(Get FASTA)	NCBI Sequence Viewer
	EDL88115	(Get FASTA)	NCBI Sequence Viewer
	EDL88116	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013088
	ENSRNOP00000013088.3
GenBank Protein	Q6AY84	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020234 ⟸ NM_001025063

- UniProtKB:

Q6AY84 (UniProtKB/Swiss-Prot), A6K0V2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGAPPSYSFVALPPRAKDGLVVFGKNSARPRDEVQEVVYFPAVDHEAESKVECTYISIDQVPRTHAIVISRPAWLWGAEMGANEHGVCIANEAINAREPAAETEALLGMDLVRLGLERGTTAKEALD
IIVSLLDEHGQGGNYYEDAHSCHSFQSAYLLVDRDEAWVLETVGKYWAAERITEGVRCICNHLSLTTKMDEEHPELRTYAQSQGWWTGEDEFNFAQVFSPADDHLDCCAGKDSLEKQEESITVQTMIN
ILRDKASGVCIDSESFLTTASIVSVLPQNRSSPCIHYFTGTPDPSRSIFKPFIFVDDVKLVPKAQSPCFGDDDPAKKEPRFQEKPDRRHELYKAHEWARAVIESDQEQGRTLRKTMLELEKQGLEAME
EILSSPEPPDPAEVGDLFYDCVDTEMKFFK

hide sequence

RefSeq Acc Id:	XP_006236574 ⟸ XM_006236512
- Peptide Label:	isoform X1
- UniProtKB:	Q6AY84 (UniProtKB/Swiss-Prot), A6K0V2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGAPPSYSFVALPPRAKDGLVVFGKNSARPRDEVQEVVYFPAVDHEAESKVECTYISIDQVPR THAIVISRPAWLWGAEMGANEHGVCIANEAINAREPAAETEALLGMDLVRLGLERGTTAKEALDIIVSLLDEHGQGGNYYEDAHSCHSFQSAYLLVDRDEAWVLETVGKYWAAERITEGVRCICNHLS LTTKMDEEHPELRTYAQSQGWWTGEDEFNFAQVFSPADDHLDCCAGKDSLEKQEESITVQTMINILRDKASGVCIDSESFLTTASIVSVLPQNRSSPCIHYFTGTPDPSRSIFKPFIFVDDVKLVPKA QSPCFGDDDPAKKEPRFQEKPDRRHELYKAHEWARAVIESDQEQGRTLRKTMLELEKQGLEAMEEILSSPEPPDPAEVGDLFYDCVDTEMKFFK hide sequence

Ensembl Acc Id:

ENSRNOP00000013088 ⟸ ENSRNOT00000013088

RefSeq Acc Id:	XP_038964182 ⟸ XM_039108254
- Peptide Label:	isoform X1
- UniProtKB:	Q6AY84 (UniProtKB/Swiss-Prot), A6K0V2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142685 ⟸ XM_063286615
- Peptide Label:	isoform X2

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AY84-F1-model_v2	AlphaFold	Q6AY84	1-414	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13693065

Promoter ID:

EPDNEW_R3589

Type:

initiation region

Name:

Scrn1_1

Description:

secernin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	84,740,636 - 84,740,696	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-44761	BioCyc
Ensembl Genes	ENSRNOG00000009636	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000013088	ENTREZGENE
	ENSRNOT00000013088.6	UniProtKB/Swiss-Prot
Gene3D-CATH	Penicillin V Acylase, Chain A	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7128646	IMAGE-MGC_LOAD
InterPro	Peptidase_C69	UniProtKB/Swiss-Prot
KEGG Report	rno:502776	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94172	IMAGE-MGC_LOAD
NCBI Gene	502776	ENTREZGENE
PANTHER	PTHR12994	UniProtKB/Swiss-Prot
	SECERNIN-1	UniProtKB/Swiss-Prot
Pfam	Peptidase_C69	UniProtKB/Swiss-Prot
PhenoGen	Scrn1	PhenoGen
RatGTEx	ENSRNOG00000009636	RatGTEx
UniProt	A6K0V2	ENTREZGENE, UniProtKB/TrEMBL
	A6K0V3_RAT	UniProtKB/TrEMBL
	Q6AY84	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-02-09	Scrn1	secernin 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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