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Gene: B4galt3 (beta-1,4-galactosyltransferase 3) Rattus norvegicus

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Symbol:

B4galt3

Name:

beta-1,4-galactosyltransferase 3

RGD ID:

1359221

Description:

Predicted to enable galactosyltransferase activity. Predicted to be involved in galactosylceramide biosynthetic process and glycosylation. Predicted to be located in cytosol. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT3 (beta-1,4-galactosyltransferase 3); PARTICIPATES IN keratan sulfate biosynthetic pathway; lacto-series glycosphingolipid metabolic pathway; N-linked glycan biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

b4Gal-T3; beta-1,4-GalTase 3; beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase; beta4Gal-T3; MGC72586; N-acetyllactosamine synthase; nal synthase; neolactotriaosylceramide beta-1,4-galactosyltransferase; similar to UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3; UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 3; UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3; UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,223,827 - 86,229,886 (+)	NCBI		GRCr8
mRatBN7.2	13	83,691,378 - 83,697,448 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	83,691,446 - 83,697,448 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	86,197,318 - 86,203,306 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	87,595,525 - 87,601,513 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	84,826,973 - 84,832,973 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	89,643,847 - 89,649,880 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	89,643,881 - 89,649,906 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	94,270,736 - 94,276,746 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	87,164,387 - 87,170,376 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	87,353,270 - 87,359,260 (+)	NCBI
Celera	13	83,322,134 - 83,328,122 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
B4galt3	Rat	autoimmune interstitial lung, joint, and kidney disease		ISO	B4GALT3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autoimmune interstitial lung disease-arthritis syndrome	ClinVar	PMID:28492532
B4galt3	Rat	gastrointestinal stromal tumor		ISO	B4GALT3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
B4galt3	Rat	parathyroid carcinoma		ISO	B4GALT3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532
B4galt3	Rat	variegate porphyria		ISO	B4GALT3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Variegate porphyria	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
B4galt3	Rat	1,2-dimethylhydrazine	decreases expression	ISO	B4galt3 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of B4GALT3 mRNA	CTD	PMID:22206623
B4galt3	Rat	2,2',4,4'-Tetrabromodiphenyl ether	affects expression	ISO	B4galt3 (Mus musculus)	6480464	2 more ...	CTD	PMID:30294300
B4galt3	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	B4galt3 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of B4GALT3 mRNA	CTD	PMID:21570461
B4galt3	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of B4GALT3 mRNA	CTD	PMID:33387578
B4galt3	Rat	2-hydroxypropanoic acid	increases expression	ISO	B4GALT3 (Homo sapiens)	6480464	Lactic Acid results in increased expression of B4GALT3 mRNA	CTD	PMID:30851411
B4galt3	Rat	3,4-methylenedioxymethamphetamine	increases expression	ISO	B4galt3 (Mus musculus)	6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of B4GALT3 mRNA	CTD	PMID:20188158
B4galt3	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	B4galt3 (Mus musculus)	6480464	Fenretinide results in increased expression of B4GALT3 mRNA	CTD	PMID:28973697
B4galt3	Rat	acrylamide	affects expression	EXP		6480464	Acrylamide affects the expression of B4GALT3 mRNA	CTD	PMID:28959563
B4galt3	Rat	all-trans-retinoic acid	decreases expression	ISO	B4GALT3 (Homo sapiens)	6480464	Tretinoin results in decreased expression of B4GALT3 mRNA	CTD	PMID:33167477
B4galt3	Rat	amphetamine	increases expression	EXP		6480464	Amphetamine results in increased expression of B4GALT3 mRNA	CTD	PMID:30779732
B4galt3	Rat	arsane	multiple interactions	ISO	B4GALT3 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of B4GALT3 mRNA	CTD	PMID:39836092
B4galt3	Rat	arsenic atom	multiple interactions	ISO	B4GALT3 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of B4GALT3 mRNA	CTD	PMID:39836092
B4galt3	Rat	arsenite(3-)	multiple interactions	ISO	B4GALT3 (Homo sapiens)	6480464	arsenite promotes the reaction [G3BP1 protein binds to B4GALT3 mRNA]	CTD	PMID:32406909
B4galt3	Rat	benzo[a]pyrene	increases expression	ISO	B4galt3 (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of B4GALT3 mRNA	CTD	PMID:22228805
B4galt3	Rat	benzo[a]pyrene	decreases expression	ISO	B4galt3 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased expression of B4GALT3 mRNA	CTD	PMID:27195522
B4galt3	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of B4GALT3 mRNA	CTD	PMID:25181051 more ...
B4galt3	Rat	bisphenol A	multiple interactions	ISO	B4GALT3 (Homo sapiens)	6480464	[[ginger extract results in increased abundance of Oils and Volatile] which co-treated with bisphenol A] affects the expression of B4GALT3 protein	CTD	PMID:33376534
B4galt3	Rat	bisphenol A	decreases expression	ISO	B4GALT3 (Homo sapiens)	6480464	bisphenol A results in decreased expression of B4GALT3 mRNA	CTD	PMID:29275510
B4galt3	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of B4GALT3 gene	CTD	PMID:28505145
B4galt3	Rat	chlorpyrifos	increases expression	ISO	B4galt3 (Mus musculus)	6480464	Chlorpyrifos results in increased expression of B4GALT3 mRNA	CTD	PMID:37019170
B4galt3	Rat	cyclosporin A	increases expression	ISO	B4GALT3 (Homo sapiens)	6480464	Cyclosporine results in increased expression of B4GALT3 mRNA	CTD	PMID:20106945 and PMID:25562108
B4galt3	Rat	cyclosporin A	decreases methylation	ISO	B4GALT3 (Homo sapiens)	6480464	Cyclosporine results in decreased methylation of B4GALT3 promoter	CTD	PMID:27989131
B4galt3	Rat	Dibutyl phosphate	affects expression	ISO	B4GALT3 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of B4GALT3 mRNA	CTD	PMID:37042841
B4galt3	Rat	doxorubicin	decreases expression	ISO	B4GALT3 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of B4GALT3 mRNA	CTD	PMID:29803840
B4galt3	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of B4GALT3 mRNA	CTD	PMID:33387578
B4galt3	Rat	manganese atom	multiple interactions	ISO	B4GALT3 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of B4GALT3 mRNA	CTD	PMID:39836092
B4galt3	Rat	manganese(0)	multiple interactions	ISO	B4GALT3 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of B4GALT3 mRNA	CTD	PMID:39836092
B4galt3	Rat	manganese(II) chloride	multiple interactions	ISO	B4GALT3 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of B4GALT3 mRNA	CTD	PMID:39836092
B4galt3	Rat	methotrexate	decreases expression	ISO	B4GALT3 (Homo sapiens)	6480464	Methotrexate results in decreased expression of B4GALT3 mRNA	CTD	PMID:24449571
B4galt3	Rat	paracetamol	affects expression	ISO	B4galt3 (Mus musculus)	6480464	Acetaminophen affects the expression of B4GALT3 mRNA	CTD	PMID:17562736
B4galt3	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of B4GALT3 mRNA	CTD	PMID:33387578
B4galt3	Rat	phenobarbital	affects expression	ISO	B4GALT3 (Homo sapiens)	6480464	Phenobarbital affects the expression of B4GALT3 mRNA	CTD	PMID:19159669
B4galt3	Rat	rac-lactic acid	increases expression	ISO	B4GALT3 (Homo sapiens)	6480464	Lactic Acid results in increased expression of B4GALT3 mRNA	CTD	PMID:30851411
B4galt3	Rat	sodium arsenite	multiple interactions	ISO	B4GALT3 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of B4GALT3 mRNA	CTD	PMID:39836092
B4galt3	Rat	testosterone	decreases expression	ISO	B4GALT3 (Homo sapiens)	6480464	Testosterone results in decreased expression of B4GALT3 mRNA	CTD	PMID:33359661
B4galt3	Rat	titanium dioxide	decreases methylation	ISO	B4galt3 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of B4GALT3 gene	CTD	PMID:35295148
B4galt3	Rat	titanium dioxide	increases methylation	ISO	B4galt3 (Mus musculus)	6480464	titanium dioxide results in increased methylation of B4GALT3 gene	CTD	PMID:35295148
B4galt3	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of B4GALT3 mRNA	CTD	PMID:33387578
B4galt3	Rat	valproic acid	affects expression	ISO	B4galt3 (Mus musculus)	6480464	Valproic Acid affects the expression of B4GALT3 mRNA	CTD	PMID:17292431

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
B4galt3	Rat	carbohydrate metabolic process	involved_in	IEA	InterPro:IPR003859	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
B4galt3	Rat	galactosylceramide biosynthetic process	involved_in	IEA	UniProtKB:O60512 and ensembl:ENSP00000320965	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
B4galt3	Rat	galactosylceramide biosynthetic process	involved_in	IBA	PANTHER:PTN002712036 and UniProtKB:O60512	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
B4galt3	Rat	galactosylceramide biosynthetic process	involved_in	ISO	B4GALT3 (Homo sapiens)	1624291	PMID:9405390	RGD	PMID:9405390
B4galt3	Rat	glycosylation	involved_in	IBA	MGI:1927169 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
B4galt3	Rat	lipid metabolic process	involved_in	IEA	UniProtKB-KW:KW-0443	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
B4galt3	Rat	protein glycosylation	involved_in	IEA	UniPathway:UPA00378	1600115	GO_REF:0000041	UniProt	GO_REF:0000041
B4galt3	Rat	protein glycosylation	involved_in	IEA	UniRule:UR001591753	1600115	GO_REF:0000104	UniProt	GO_REF:0000104

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
B4galt3	Rat	cytosol	located_in	IEA	UniProtKB:O60512 and ensembl:ENSP00000320965	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
B4galt3	Rat	cytosol	located_in	ISO	B4GALT3 (Homo sapiens) and UniProtKB:O60512-1	1624291		RGD	GO_REF:0000052
B4galt3	Rat	cytosol	located_in	IEA	UniProtKB:A0A384NY44 and ensembl:ENSP00000320965	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
B4galt3	Rat	Golgi apparatus	located_in	ISO	B4GALT3 (Homo sapiens) and UniProtKB:O60512-1	1624291		RGD	GO_REF:0000052
B4galt3	Rat	Golgi apparatus	located_in	IEA	UniProtKB:A0A384NY44 and ensembl:ENSP00000320965	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
B4galt3	Rat	Golgi apparatus	located_in	IEA	UniRule:UR001591753	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
B4galt3	Rat	Golgi apparatus	located_in	IEA	UniProtKB:O60512 and ensembl:ENSP00000320965	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
B4galt3	Rat	Golgi apparatus	located_in	IEA	UniProtKB-KW:KW-0333	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
B4galt3	Rat	Golgi apparatus	is_active_in	IBA	FB:FBgn0027538 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
B4galt3	Rat	Golgi cisterna membrane	located_in	IEA	UniProtKB-SubCell:SL-0136	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
B4galt3	Rat	Golgi cisterna membrane	located_in	IEA	UniRule:UR001591753	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
B4galt3	Rat	Golgi membrane	located_in	IEA	UniProtKB-SubCell:SL-0134	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
B4galt3	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
B4galt3	Rat	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity	enables	IEA	EC:2.4.1.38	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
B4galt3	Rat	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity	enables	IEA	RHEA:22932	1600115	GO_REF:0000116	RHEA	GO_REF:0000116
B4galt3	Rat	galactosyltransferase activity	enables	IEA	UniProtKB:O60512 and ensembl:ENSP00000320965	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
B4galt3	Rat	galactosyltransferase activity	enables	IBA	FB:FBgn0039258 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
B4galt3	Rat	galactosyltransferase activity	enables	ISO	B4GALT3 (Homo sapiens)	1624291	PMID:9405390	RGD	PMID:9405390
B4galt3	Rat	glycosyltransferase activity	enables	IEA	UniProtKB-KW:KW-0328	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
B4galt3	Rat	glycosyltransferase activity	enables	IEA	InterPro:IPR003859	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
B4galt3	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
B4galt3	Rat	metal ion binding	enables	IEA	UniRule:UR001591753	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
B4galt3	Rat	N-acetyllactosamine synthase activity	enables	IEA	EC:2.4.1.90	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
B4galt3	Rat	N-acetyllactosamine synthase activity	enables	IEA	RHEA:17745	1600115	GO_REF:0000116	RHEA	GO_REF:0000116
B4galt3	Rat	transferase activity	enables	IEA	UniProtKB-KW:KW-0808	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Imported Annotations - KEGG (archival)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
B4galt3	Rat	keratan sulfate biosynthetic pathway		IEA		6907045		KEGG	rno:00533
B4galt3	Rat	lacto-series glycosphingolipid metabolic pathway		IEA		6907045		KEGG	rno:00601
B4galt3	Rat	N-linked glycan biosynthetic pathway		IEA		6907045		KEGG	rno:00510
B4galt3	Rat	O-linked glycan biosynthetic pathway		IEA		6907045		KEGG	rno:00514

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:9405390	PMID:15489334	PMID:19199708

B4galt3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,223,827 - 86,229,886 (+)	NCBI		GRCr8
mRatBN7.2	13	83,691,378 - 83,697,448 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	83,691,446 - 83,697,448 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	86,197,318 - 86,203,306 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	87,595,525 - 87,601,513 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	84,826,973 - 84,832,973 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	89,643,847 - 89,649,880 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	89,643,881 - 89,649,906 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	94,270,736 - 94,276,746 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	87,164,387 - 87,170,376 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	87,353,270 - 87,359,260 (+)	NCBI
Celera	13	83,322,134 - 83,328,122 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

B4GALT3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	161,171,310 - 161,177,968 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	161,171,310 - 161,177,968 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	161,141,100 - 161,147,758 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	159,407,725 - 159,413,938 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	157,954,173 - 157,960,387	NCBI
Celera	1	134,208,254 - 134,214,467 (-)	NCBI		Celera
Cytogenetic Map	1	q23.3	NCBI
HuRef	1	132,498,042 - 132,504,704 (-)	NCBI		HuRef
CHM1_1	1	162,537,350 - 162,544,012 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	160,308,766 - 160,315,427 (-)	NCBI		T2T-CHM13v2.0

B4galt3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	171,097,898 - 171,104,468 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	171,097,898 - 171,104,469 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	171,270,328 - 171,276,895 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	171,270,328 - 171,276,896 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	173,200,459 - 173,207,026 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	173,107,063 - 173,113,570 (+)	NCBI		MGSCv36	mm8
Celera	1	173,726,385 - 173,732,916 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	79.29	NCBI

B4galt3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	12,932,059 - 12,940,723 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	12,934,521 - 12,945,435 (-)	NCBI	ChiLan1.0	ChiLan1.0

B4GALT3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	88,674,437 - 88,680,660 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	88,364,762 - 88,370,989 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	136,583,783 - 136,590,416 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	140,496,597 - 140,503,214 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	140,496,597 - 140,503,214 (-)	Ensembl	panpan1.1		panPan2

B4GALT3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	21,301,835 - 21,306,854 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	21,302,003 - 21,312,958 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	21,375,960 - 21,381,714 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	21,418,949 - 21,424,705 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	21,419,010 - 21,424,703 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	21,306,787 - 21,312,540 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	21,721,206 - 21,726,973 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	22,130,365 - 22,136,121 (+)	NCBI		UU_Cfam_GSD_1.0

B4galt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	7,266,138 - 7,272,721 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936903	474,789 - 481,342 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

B4GALT3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	89,278,439 - 89,284,400 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	89,278,256 - 89,284,407 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	97,135,015 - 97,141,134 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

B4GALT3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	2,807,510 - 2,814,480 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	2,807,895 - 2,814,476 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	1,855,058 - 1,861,572 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

B4galt3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	206,591 - 212,141 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	205,726 - 212,141 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in B4galt3
30 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	319
Count of miRNA genes:	176
Interacting mature miRNAs:	203
Transcripts:	ENSRNOT00000004735
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	66451204	106807694	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	74862117	85581182	Rat
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	46088046	91088046	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	59874408	85581182	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	34663461	87525369	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	31241331	93395974	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	65103704	106807694	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	56056920	101056920	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	80753256	106807694	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	69060519	86800898	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	46197976	84753113	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	69060519	86800898	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	74023918	97213863	Rat
1641901	Alcrsp6	Alcohol response QTL 6			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	13	52362171	97362171	Rat
12879441	Bp396	Blood pressure QTL 396			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45699983	90699983	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	65103704	106807694	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	69060519	86800898	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	39754544	84754544	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	61825626	106807694	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	74862117	101339893	Rat

AW125175

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	83,697,056 - 83,697,172 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	89,649,489 - 89,649,604	NCBI	Rnor6.0
Rnor_5.0	13	94,276,355 - 94,276,470	UniSTS	Rnor5.0
RGSC_v3.4	13	87,169,997 - 87,170,112	UniSTS	RGSC3.4
Celera	13	83,327,743 - 83,327,858	UniSTS
Cytogenetic Map	13	q24	UniSTS

RH128542

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	83,697,114 - 83,697,316 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	89,649,547 - 89,649,748	NCBI	Rnor6.0
Rnor_5.0	13	94,276,413 - 94,276,614	UniSTS	Rnor5.0
RGSC_v3.4	13	87,170,055 - 87,170,256	UniSTS	RGSC3.4
Celera	13	83,327,801 - 83,328,002	UniSTS
Cytogenetic Map	13	q24	UniSTS

RH142400

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	83,696,924 - 83,697,078 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	89,649,357 - 89,649,510	NCBI	Rnor6.0
Rnor_5.0	13	94,276,223 - 94,276,376	UniSTS	Rnor5.0
RGSC_v3.4	13	87,169,865 - 87,170,018	UniSTS	RGSC3.4
Celera	13	83,327,611 - 83,327,764	UniSTS
RH 3.4 Map	13	561.3	UniSTS
Cytogenetic Map	13	q24	UniSTS

AI406786

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	83,694,298 - 83,694,458 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	89,646,731 - 89,646,890	NCBI	Rnor6.0
Rnor_5.0	13	94,273,597 - 94,273,756	UniSTS	Rnor5.0
RGSC_v3.4	13	87,167,239 - 87,167,398	UniSTS	RGSC3.4
Celera	13	83,324,985 - 83,325,144	UniSTS
RH 3.4 Map	13	551.9	UniSTS
Cytogenetic Map	13	q24	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001009539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004735 ⟹ ENSRNOP00000004735

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	83,691,446 - 83,697,448 (+)	Ensembl
Rnor_6.0 Ensembl	13	89,643,881 - 89,649,906 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108060 ⟹ ENSRNOP00000090652

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	83,691,510 - 83,697,435 (+)	Ensembl

RefSeq Acc Id:

NM_001009539 ⟹ NP_001009539

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,223,897 - 86,229,885 (+)	NCBI
mRatBN7.2	13	83,691,448 - 83,697,436 (+)	NCBI
Rnor_6.0	13	89,643,880 - 89,649,868 (+)	NCBI
Rnor_5.0	13	94,270,736 - 94,276,746 (+)	NCBI
RGSC_v3.4	13	87,164,387 - 87,170,376 (+)	RGD
Celera	13	83,322,134 - 83,328,122 (+)	RGD

Sequence:

show sequence

CCGCTTCCAAGATGGCGGCAGCGATGCTTGCCCGGTTGTCCGGGTGGCGGTGACGACGGGAAGCAGACCAGGTGACTGGTTATCCTTGATCATTTCTGGTTCCCGCTGGTCCCAGATTGGCTGTTGGG
ATGCTTGTTTTCTGTCCTCTGTGACAGTTGAAATTTGAGATAATGCCTCATTTCTCTGCTCCCCGGGGACCTCCTGGAGCCTCCATGATTCGGAAAAAGACAGCTTGAGCACAGTCCCTTCACTTCTT
ACCTAGCCCTCAGGTCGAGATGTTGCGGAGGCTGCTGGAGAGGCCCTGCACACTGGCCCTGCTTGTGGGCTCCCAACTGGCAGTTATGATGTATCTGTCACTAGGGGGCTTCCGAAGTCTTAGTGCCC
TGTTTGGTCGAGATCCAGGCCCAACATTCGACTATTCTCATCCCCATGATGTCTATAGTAACCTCAGTCACCTGCCTGGAGCCCCTGGAGCTGCAGGGGCTCCTCTAGCTCAAGTTCTGCCTGACTGT
CCAGAAAGATCGCCTTTCTTAGTGGGTCCTGTGTCAGTATCCTTTAGCCCAGTGCCATCACTAGCAGAGATCGTGGAGCGGAATCCCCGGGTGGAATCAGGGGGCCGGTACCGTCCTGCAGGATGTGA
GCCTCGCTCCCGAACAGCCATAATTGTGCCCCACCGTGCCCGGGAGCACCACCTCCGACTGCTACTCTATCACCTGCACCCCTTCCTGCAGCGCCAGCAGCTTGCTTATGGCATCTATGTCATCCACC
AGGCTGGAAATGGAACGTTTAACAGGGCCAAACTGCTGAACGTAGGGGTCAGGGAAGCCCTTCGTGACGAAGAGTGGGACTGCTTGTTTTTACACGATGTGGACCTCCTTCCAGAAAACGACCATAAC
CTGTATGTGTGTGACCCCCGGGGACCCCGCCATGTTGCTGTCGCCATGAACAAGTTTGGATACAGCCTTCCGTACCCCCAGTACTTTGGCGGAGTTTCAGCACTCACTCCTGACCAGTACCTGAAGAT
GAATGGCTTCCCCAATGAATACTGGGGCTGGGGTGGCGAGGATGACGACATTGCTACCAGGGTTCGCCTGGCTGGGATGAAGATTTCCCGACCACCCACCTCTGTGGGACACTACAAGATGGTGAAGC
ACAGAGGGGATAAAGGAAATGAGGAAAACCCCCACAGATTTGACCTCCTGGTCCGTACCCAGAATTCTTGGACACAAGATGGAATGAACTCACTAACATACCGACTGCTGGCAAGAGAGCTGGGTCCT
CTCTACACCAACATCACTGCAGACATTGGGACTGACCCTCGGGGTCCCCGGGCTCCCTCTGGTCCCCGATACCCACCAGGTTCCTCCCAGGCCTTCCGTCAGGAGATGCTGCAACGCCGGCCCCCAGC
TAGGCCTGGCCCTCTGCCTACTGCCAACCACACAGCTCCCCATGGTTCACACTGACTCTTCTCTGCCCACTGTAATCATGAAACTAAATGGGAGGGGTCGAGTTCCTCATACCCTCTGCTCCTCACTG
CTTTGAGGGATGTGAGGGACTTTACTGCTGTGCTAGGGGGCAGGGACCTCTCCTCACTACTAGATTGGAGCTGGGCTCCTCTAGACCTGGAGGTTCCTCTTTCTAGGGGCCACCTGTCAGGGCTTATG
ACTGTGAATCTTTGATGTCATTTTATGTGACAAATCCTGGGAGTCCTCTGCCCCTGGGGTTAGGAGCAGGGCTGGATCCCACGTCCCTTCCTCGTCTGTGGACATTGCTCTTTCAAGAGTGATCTGGC
TTCTCCTGGGACCTCTGTGAATATTTATTCTATTTATGATGGTTCCTGAGAAGCTGTCTGGAAGAGGAAACCCCTAGCTAGGCATTTCCTGCGAGTGCTGGAGTGACTCCTCTGGTCTTGACCCAGGG
GGCAGGGGCTGGGATTTTGATATCTTTTCTAATAAAGGACTTTGTCTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250253 ⟹ XP_006250315

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,223,827 - 86,229,886 (+)	NCBI
mRatBN7.2	13	83,691,378 - 83,697,448 (+)	NCBI
Rnor_6.0	13	89,643,847 - 89,649,880 (+)	NCBI
Rnor_5.0	13	94,270,736 - 94,276,746 (+)	NCBI

Sequence:

show sequence

ACGCCCCGTGACGTCAGACTCCGCCCCCAGCGCCCGCTTCCAAGATGGCGGCAGCGATGCTTGCCCGGTTGTCCGGGTGGCGGTGACGACGGGAAGCAGACCAGGTGACTGGTTATCCTTGATCATTT
TTGGTTCCCGCTGGTCCCAGATTGGCTGTTGGGATGCTTGTTTTCTGTCCTCTGTGACAGTTGAAATTTGAGATAATGCCTCATTTTTCTGCTCCCCGGGGACCTCCTGGAGCCCCCATGATTCGGAA
AAAGACAGCTTGAGCACAGAAGTCCCTTCACTTCTTACCTAGCCCTCAGGTCGAGATGTTGCGGAGGCTGCTGGAGAGGCCCTGCACACTGGCCCTGCTTGTGGGCTCCCAACTGGCAGTTATGATGT
ATCTGTCACTAGGGGGCTTCCGAAGTCTTAGTGCCCTGTTTGGTCGAGATCCAGGCCCAACATTCGACTATTCTCATCCCCATGATGTCTATAGTAACCTCAGTCACCTGCCTGGAGCCCCTGGAGCT
GCAGGGGCTCCTCTAGCTCAAGTTCTGCCTGACTGTCCAGAAAGATCGCCTTTCTTAGTGGGTCCTGTGTCAGTATCCTTTAGCCCAGTGCCATCACTAGCAGAGATCGTGGAGCGGAATCCCCGGGT
GGAATCAGGGGGCCGGTACCGTCCTGCAGGATGTGAGCCTCGCTCCCGAACAGCCATAATTGTGCCCCACCGTGCCCGGGAGCACCACCTCCGACTGCTACTCTATCACCTGCACCCCTTCCTGCAGC
GCCAGCAGCTTGCTTATGGCATCTATGTCATCCACCAGGCTGGAAATGGAACGTTTAACAGGGCCAAACTGCTGAACGTAGGGGTCAGGGAAGCCCTTCGTGACGAAGAGTGGGACTGCTTGTTTTTA
CACGATGTGGACCTCCTTCCAGAAAACGACCATAACCTGTATGTGTGTGACCCCCGGGGACCCCGCCATGTTGCTGTCGCCATGAACAAGTTTGGATACAGCCTTCCGTACCCCCAGTACTTTGGCGG
AGTTTCAGCACTCACTCCTGACCAGTACCTGAAGATGAATGGCTTCCCCAATGAATATTGGGGCTGGGGTGGCGAGGATGACGACATTGCTACCAGGGTTCGCCTGGCTGGGATGAAGATTTCCCGAC
CACCCACCTCTGTGGGACACTACAAGATGGTGAAGCACAGAGGGGATAAAGGAAATGAGGAAAACCCCCACAGATTTGACCTCCTGGTCCGTACCCAGAATTCTTGGACACAAGATGGAATGAACTCA
CTAACATACCGACTGCTGGCAAGAGAGCTGGGTCCTCTCTACACCAACATCACTGCAGACATTGGGACTGACCCTCGGGGTCCCCGGGCTCCCTCTGGTCCCCGATACCCACCAGGTTCCTCCCAGGC
CTTCCGTCAGGAGATGCTGCAACGCCGGCCCCCAGCTAGGCCTGGCCCTCTGCCTACTGCCAACCACACAGCTCCCCATGGTTCACACTGACTCTTCTCTGCCCACTGTAATCATGAAACTAAATGGG
AGGGGTCGAGTTCCTCATACCCTCTGCTCCTCACTGCTTTGAGGGATGTGAGGGACTTTACTGCTGTGCTAGGGGGCAGGGACCTCTCCTCACTACTAGATTGGAGCTGGGCTCCTCTAGACCTGGAG
GTTCCTCTTTCTAGGGGCCACCTGTCAGGGCTTATGACTGTGAATCTTTGATGTCATTTTATGTGACAAATCCTGGGAGTCCTCTGCCCCTGGGGTTAGGAGCAGGGCTGGACCCCACGTCCCTTCCT
CGTCTGTGGACATTGCTCTTTCAAGAGTGATCTGGCTTCTCCTGGGACCTCTGTGAATATTTATTCTATTTATGATGGTTCCTGAGAAGCTGTCTGGAAGAGGAAACCCCTAGCTAGGCATTTCCTGC
GAGTGCTGGAGTGACTCCTCTGGTCTTGACCCAGGGGGCAGGGGCTGGGATTTTGATATCTTTTCTAATAAAGGACTTTGTCTCACCTTTGCTTGTAA

hide sequence

RefSeq Acc Id:

XM_006250254 ⟹ XP_006250316

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,223,827 - 86,229,886 (+)	NCBI
mRatBN7.2	13	83,691,378 - 83,697,448 (+)	NCBI
Rnor_6.0	13	89,643,847 - 89,649,880 (+)	NCBI
Rnor_5.0	13	94,270,736 - 94,276,746 (+)	NCBI

Sequence:

show sequence

ACGCCCCGTGACGTCAGACTCCGCCCCCAGCGCCCGCTTCCAAGATGGCGGCAGCGATGCTTGCCCGGTTGTCCGGGTGGCGGTGACGACGGGAAGCAGACCAGGTGACTGGTTATCCTTGATCATTT
TTGGTTCCCGCTGGTCCCAGATTGGCTGTTGGGATGCTTGTTTTCTGTCCTCTGTGACAGTTGAAATTTGAGATAATGCCTCATTTTTCTGCTCCCCGGGGACCTCCTGGAGCCCCCATGATTCGGAA
AAAGACAGCTTGAGCACAGTGTTCGTTCCTTTCTGTGACTTTGTTCTCTGCCTGTTTTTTCTTCCTTTCCCTGGCCGCACTTTCATCTCTACCTGCTGATGTCTGTCTTCTGGCTTGCTCTCTTCCTG
TTTGCTTCCAGAAGTCCCTTCACTTCTTACCTAGCCCTCAGGTCGAGATGTTGCGGAGGCTGCTGGAGAGGCCCTGCACACTGGCCCTGCTTGTGGGCTCCCAACTGGCAGTTATGATGTATCTGTCA
CTAGGGGGCTTCCGAAGTCTTAGTGCCCTGTTTGGTCGAGATCCAGGCCCAACATTCGACTATTCTCATCCCCATGATGTCTATAGTAACCTCAGTCACCTGCCTGGAGCCCCTGGAGCTGCAGGGGC
TCCTCTAGCTCAAGTTCTGCCTGACTGTCCAGAAAGATCGCCTTTCTTAGTGGGTCCTGTGTCAGTATCCTTTAGCCCAGTGCCATCACTAGCAGAGATCGTGGAGCGGAATCCCCGGGTGGAATCAG
GGGGCCGGTACCGTCCTGCAGGATGTGAGCCTCGCTCCCGAACAGCCATAATTGTGCCCCACCGTGCCCGGGAGCACCACCTCCGACTGCTACTCTATCACCTGCACCCCTTCCTGCAGCGCCAGCAG
CTTGCTTATGGCATCTATGTCATCCACCAGGCTGGAAATGGAACGTTTAACAGGGCCAAACTGCTGAACGTAGGGGTCAGGGAAGCCCTTCGTGACGAAGAGTGGGACTGCTTGTTTTTACACGATGT
GGACCTCCTTCCAGAAAACGACCATAACCTGTATGTGTGTGACCCCCGGGGACCCCGCCATGTTGCTGTCGCCATGAACAAGTTTGGATACAGCCTTCCGTACCCCCAGTACTTTGGCGGAGTTTCAG
CACTCACTCCTGACCAGTACCTGAAGATGAATGGCTTCCCCAATGAATATTGGGGCTGGGGTGGCGAGGATGACGACATTGCTACCAGGGTTCGCCTGGCTGGGATGAAGATTTCCCGACCACCCACC
TCTGTGGGACACTACAAGATGGTGAAGCACAGAGGGGATAAAGGAAATGAGGAAAACCCCCACAGATTTGACCTCCTGGTCCGTACCCAGAATTCTTGGACACAAGATGGAATGAACTCACTAACATA
CCGACTGCTGGCAAGAGAGCTGGGTCCTCTCTACACCAACATCACTGCAGACATTGGGACTGACCCTCGGGGTCCCCGGGCTCCCTCTGGTCCCCGATACCCACCAGGTTCCTCCCAGGCCTTCCGTC
AGGAGATGCTGCAACGCCGGCCCCCAGCTAGGCCTGGCCCTCTGCCTACTGCCAACCACACAGCTCCCCATGGTTCACACTGACTCTTCTCTGCCCACTGTAATCATGAAACTAAATGGGAGGGGTCG
AGTTCCTCATACCCTCTGCTCCTCACTGCTTTGAGGGATGTGAGGGACTTTACTGCTGTGCTAGGGGGCAGGGACCTCTCCTCACTACTAGATTGGAGCTGGGCTCCTCTAGACCTGGAGGTTCCTCT
TTCTAGGGGCCACCTGTCAGGGCTTATGACTGTGAATCTTTGATGTCATTTTATGTGACAAATCCTGGGAGTCCTCTGCCCCTGGGGTTAGGAGCAGGGCTGGACCCCACGTCCCTTCCTCGTCTGTG
GACATTGCTCTTTCAAGAGTGATCTGGCTTCTCCTGGGACCTCTGTGAATATTTATTCTATTTATGATGGTTCCTGAGAAGCTGTCTGGAAGAGGAAACCCCTAGCTAGGCATTTCCTGCGAGTGCTG
GAGTGACTCCTCTGGTCTTGACCCAGGGGGCAGGGGCTGGGATTTTGATATCTTTTCTAATAAAGGACTTTGTCTCACCTTTGCTTGTAA

hide sequence


Protein RefSeqs	NP_001009539	(Get FASTA)	NCBI Sequence Viewer
	NP_001416870	(Get FASTA)	NCBI Sequence Viewer
	NP_001416871	(Get FASTA)	NCBI Sequence Viewer
	NP_001416872	(Get FASTA)	NCBI Sequence Viewer
	XP_006250315	(Get FASTA)	NCBI Sequence Viewer
	XP_006250316	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH61812	(Get FASTA)	NCBI Sequence Viewer
	EDL94620	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004735
	ENSRNOP00000004735.4
	ENSRNOP00000090652.1
GenBank Protein	Q6P768	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001009539 ⟸ NM_001009539

- UniProtKB:

Q6P768 (UniProtKB/Swiss-Prot), A6JFW4 (UniProtKB/TrEMBL), A0A8I6ADZ3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLRRLLERPCTLALLVGSQLAVMMYLSLGGFRSLSALFGRDPGPTFDYSHPHDVYSNLSHLPGAPGAAGAPLAQVLPDCPERSPFLVGPVSVSFSPVPSLAEIVERNPRVESGGRYRPAGCEPRSRTA
IIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNE
YWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLLVRTQNSWTQDGMNSLTYRLLARELGPLYTNITADIGTDPRGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGPLP
TANHTAPHGSH

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RefSeq Acc Id:

XP_006250316 ⟸ XM_006250254

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLRRLLERPCTLALLVGSQLAVMMYLSLGGFRSLSALFGRDPGPTFDYSHPHDVYSNLSHLPGA
PGAAGAPLAQVLPDCPERSPFLVGPVSVSFSPVPSLAEIVERNPRVESGGRYRPAGCEPRSRTAIIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEEWDC
LFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLLVRTQNSWTQDG
MNSLTYRLLARELGPLYTNITADIGTDPRGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGPLPTANHTAPHGSH

hide sequence

RefSeq Acc Id:

XP_006250315 ⟸ XM_006250253

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLRRLLERPCTLALLVGSQLAVMMYLSLGGFRSLSALFGRDPGPTFDYSHPHDVYSNLSHLPGAPGAAGAPLAQVLPDCPERSPFLVGPVSVSFSPVPSLAEIVERNPRVESGGRYRPAGCEPRSRTA
IIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNE
YWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLLVRTQNSWTQDGMNSLTYRLLARELGPLYTNITADIGTDPRGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGPLP
TANHTAPHGSH

hide sequence

Ensembl Acc Id:

ENSRNOP00000004735 ⟸ ENSRNOT00000004735

Ensembl Acc Id:

ENSRNOP00000090652 ⟸ ENSRNOT00000108060

Protein Domains

Galactosyltransferase C-terminal Galactosyltransferase N-terminal

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6P768-F1-model_v2	AlphaFold	Q6P768	1-395	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13698999

Promoter ID:

EPDNEW_R9524

Type:

multiple initiation site

Name:

B4galt3_1

Description:

beta-1,4-galactosyltransferase 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	89,643,869 - 89,643,929	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-17379	BioCyc
Ensembl Genes	ENSRNOG00000003551	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004735	ENTREZGENE
	ENSRNOT00000004735.6	UniProtKB/Swiss-Prot
	ENSRNOT00000108060.1	UniProtKB/TrEMBL
Gene3D-CATH	Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5598658	IMAGE-MGC_LOAD
InterPro	Galactosyl_T	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Galactosyl_T_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Galactosyl_T_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Nucleotide-diphossugar_trans	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:494342	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:72586	IMAGE-MGC_LOAD
NCBI Gene	494342	ENTREZGENE
PANTHER	BETA-1,4-GALACTOSYLTRANSFERASE 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR19300	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Glyco_transf_7C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glyco_transf_7N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	B4galt3	PhenoGen
PRINTS	B14GALTRFASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003551	RatGTEx
Superfamily-SCOP	SSF53448	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6ADZ3	ENTREZGENE, UniProtKB/TrEMBL
	A6JFW4	ENTREZGENE, UniProtKB/TrEMBL
	B4GT3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-22	B4galt3	beta-1,4-galactosyltransferase 3	B4galt3	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	B4galt3	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3			Symbol and Name updated	1299863	APPROVED
2005-07-29	MGC72586	similar to UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Annotations - KEGG (archival)