B4galt3 (beta-1,4-galactosyltransferase 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: B4galt3 (beta-1,4-galactosyltransferase 3) Ictidomys tridecemlineatus
Analyze
Symbol: B4galt3
Name: beta-1,4-galactosyltransferase 3
RGD ID: 12734715
Description: ENCODES a protein that exhibits galactosyltransferase activity (ortholog); INVOLVED IN galactosylceramide biosynthetic process (ortholog); ASSOCIATED WITH Autoimmune Interstitial Lung, Joint, and Kidney Disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-1,4-galactosyltransferase 3, transcript variant X1; beta-1,4-galactosyltransferase 3, transcript variant X2; beta-1,4-galactosyltransferase 3, transcript variant X3; beta-1,4-galactosyltransferase 3, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,266,138 - 7,272,721 (-)NCBI
SpeTri2.0NW_004936903474,789 - 481,342 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
B4galt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,266,138 - 7,272,721 (-)NCBI
SpeTri2.0NW_004936903474,789 - 481,342 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,171,310 - 161,177,968 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1161,171,310 - 161,177,968 (-)EnsemblGRCh38hg38GRCh38
GRCh371161,141,100 - 161,147,758 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,407,725 - 159,413,938 (-)NCBINCBI36hg18NCBI36
Build 341157,954,173 - 157,960,387NCBI
Celera1134,208,254 - 134,214,467 (-)NCBI
Cytogenetic Map1q23.3NCBI
HuRef1132,498,042 - 132,504,704 (-)NCBIHuRef
CHM1_11162,537,350 - 162,544,012 (-)NCBICHM1_1
T2T-CHM13v2.01160,308,766 - 160,315,427 (-)NCBI
B4galt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,097,898 - 171,104,468 (+)NCBIGRCm39mm39
GRCm39 Ensembl1171,097,898 - 171,104,469 (+)Ensembl
GRCm381171,270,328 - 171,276,895 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,270,328 - 171,276,896 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,200,459 - 173,207,026 (+)NCBIGRCm37mm9NCBIm37
MGSCv361173,107,063 - 173,113,570 (+)NCBImm8
Celera1173,726,385 - 173,732,916 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.29NCBI
B4galt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21383,691,378 - 83,697,448 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1383,691,446 - 83,697,448 (+)Ensembl
Rnor_6.01389,643,847 - 89,649,880 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1389,643,881 - 89,649,906 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01394,270,736 - 94,276,746 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41387,164,387 - 87,170,376 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11387,353,270 - 87,359,260 (+)NCBI
Celera1383,322,134 - 83,328,122 (+)NCBICelera
Cytogenetic Map13q24NCBI
B4galt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,932,059 - 12,940,723 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546812,934,521 - 12,945,435 (-)NCBIChiLan1.0ChiLan1.0
B4GALT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11140,496,597 - 140,503,214 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,496,597 - 140,503,214 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01136,583,783 - 136,590,416 (-)NCBIMhudiblu_PPA_v0panPan3
B4GALT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,301,835 - 21,306,854 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,302,003 - 21,312,958 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3821,375,960 - 21,381,714 (+)NCBI
ROS_Cfam_1.03821,418,949 - 21,424,705 (+)NCBI
ROS_Cfam_1.0 Ensembl3821,419,010 - 21,424,703 (+)Ensembl
UMICH_Zoey_3.13821,306,787 - 21,312,540 (+)NCBI
UNSW_CanFamBas_1.03821,721,206 - 21,726,973 (+)NCBI
UU_Cfam_GSD_1.03822,130,365 - 22,136,121 (+)NCBI
B4GALT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,278,439 - 89,284,400 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1489,278,256 - 89,284,407 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,135,015 - 97,141,134 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1202,807,510 - 2,814,480 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl202,807,895 - 2,814,476 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660381,855,058 - 1,861,572 (+)NCBIVero_WHO_p1.0
B4galt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624794206,591 - 212,141 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_004624794205,726 - 212,141 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013365973   ⟹   XP_013221427
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,266,138 - 7,272,721 (-)NCBI
SpeTri2.0NW_004936903474,796 - 481,342 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013365974   ⟹   XP_013221428
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,266,138 - 7,272,721 (-)NCBI
SpeTri2.0NW_004936903474,789 - 481,342 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013365976   ⟹   XP_013221430
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,266,138 - 7,272,628 (-)NCBI
SpeTri2.0NW_004936903474,789 - 481,342 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013365977   ⟹   XP_013221431
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,266,138 - 7,272,720 (-)NCBI
SpeTri2.0NW_004936903474,789 - 481,342 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040287289   ⟹   XP_040143223
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,266,138 - 7,272,558 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_013221427   ⟸   XM_013365973
- Peptide Label: isoform X2
- UniProtKB: I3M7Y4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013221428   ⟸   XM_013365974
- Peptide Label: isoform X2
- UniProtKB: I3M7Y4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013221430   ⟸   XM_013365976
- Peptide Label: isoform X2
- UniProtKB: I3M7Y4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013221431   ⟸   XM_013365977
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040143223   ⟸   XM_040287289
- Peptide Label: isoform X2
Protein Domains
Glyco_transf_7C   Glyco_transf_7N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006461 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000005771 ENTREZGENE
  ENSSTOP00000005771.2 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006455.3 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Galactosyl_T UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/TrEMBL
  Galactosyl_T_N UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene B4galt3 ENTREZGENE
PANTHER PTHR19300 UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
PRINTS B14GALTRFASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3M7Y4 ENTREZGENE, UniProtKB/TrEMBL