Xpo6 (exportin 6) - Rat Genome Database

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Gene: Xpo6 (exportin 6) Rattus norvegicus
Analyze
Symbol: Xpo6
Name: exportin 6
RGD ID: 1311491
Description: Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus. Predicted to be located in cytosol; nuclear lumen; and plasma membrane. Predicted to be part of protein-containing complex. Orthologous to human XPO6 (exportin 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: exportin-6; LOC293476
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81190,102,719 - 190,192,138 (-)NCBIGRCr8
mRatBN7.21180,672,114 - 180,761,543 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,672,119 - 180,761,543 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,003,284 - 189,092,561 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01196,189,323 - 196,278,608 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01188,872,436 - 188,961,827 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01197,500,509 - 197,590,382 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1197,500,514 - 197,590,277 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01204,484,091 - 204,574,002 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,179,733 - 185,269,588NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1178,332,154 - 178,421,776 (-)NCBICelera
Cytogenetic Map1q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Xpo6Ratneuronal ceroid lipofuscinosis  ISOXPO6 (Homo sapiens)8554872ClinVar Annotator: match by term: Neuronal ceroid lipofuscinosisClinVarPMID:28492532 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Xpo6Ratsubstance-related disorder  ISOXPO6 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20098672

1 to 20 of 67 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Xpo6Rat(-)-epigallocatechin 3-gallate multiple interactionsISOXPO6 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of XPO6 mRNACTDPMID:22079256
Xpo6Rat1,2-dimethylhydrazine increases expressionISOXpo6 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of XPO6 mRNACTDPMID:22206623
Xpo6Rat17beta-estradiol increases expressionISOXPO6 (Homo sapiens)6480464Estradiol results in increased expression of XPO6 mRNACTDPMID:23019147 and PMID:31614463
Xpo6Rat17beta-estradiol increases expressionISOXpo6 (Mus musculus)6480464Estradiol results in increased expression of XPO6 mRNACTDPMID:39298647
Xpo6Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOXpo6 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of XPO6 mRNACTDPMID:21570461
Xpo6Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of XPO6 mRNACTDPMID:34747641
Xpo6Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOXPO6 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of XPO6 mRNACTDPMID:22903824
Xpo6Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOXpo6 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of XPO6 mRNACTDPMID:19770486
Xpo6Rat2-methylcholine affects expressionISOXPO6 (Homo sapiens)6480464beta-methylcholine affects the expression of XPO6 mRNACTDPMID:21179406
Xpo6Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOXPO6 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of XPO6 mRNA more ...CTDPMID:28628672
Xpo6Rat4,4'-sulfonyldiphenol multiple interactionsISOXPO6 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of XPO6 mRNACTDPMID:28628672
Xpo6Rat4,4'-sulfonyldiphenol decreases expressionISOXpo6 (Mus musculus)6480464bisphenol S results in decreased expression of XPO6 mRNACTDPMID:39298647
Xpo6Ratacrolein multiple interactionsISOXPO6 (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of XPO6 mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of XPO6 mRNACTDPMID:32699268
Xpo6Ratall-trans-retinoic acid decreases expressionISOXPO6 (Homo sapiens)6480464Tretinoin results in decreased expression of XPO6 mRNACTDPMID:18614847
Xpo6Ratalpha-pinene multiple interactionsISOXPO6 (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of XPO6 mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of XPO6 mRNACTDPMID:32699268
Xpo6Ratantirheumatic drug decreases expressionISOXPO6 (Homo sapiens)6480464Antirheumatic Agents results in decreased expression of XPO6 mRNACTDPMID:24449571
Xpo6Ratbenzo[a]pyrene increases methylationISOXPO6 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of XPO6 promoterCTDPMID:27901495
Xpo6Ratbenzo[a]pyrene diol epoxide I decreases expressionISOXPO6 (Homo sapiens)64804647 more ...CTDPMID:19150397
Xpo6Ratbeta-lapachone increases expressionISOXPO6 (Homo sapiens)6480464beta-lapachone results in increased expression of XPO6 mRNACTDPMID:38218311
Xpo6Ratbisphenol A affects expressionEXP 6480464bisphenol A affects the expression of XPO6 mRNACTDPMID:25181051

1 to 20 of 67 rows

Biological Process
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Xpo6Ratintracellular protein transport involved_inIEAInterPro:IPR0014941600115GO_REF:0000002InterProGO_REF:0000002
Xpo6Ratmacromolecule localization involved_inIEAARBA:ARBA000290921600115GO_REF:0000117UniProtGO_REF:0000117
Xpo6Ratnucleocytoplasmic transport involved_inIEAARBA:ARBA000277581600115GO_REF:0000117UniProtGO_REF:0000117
Xpo6Ratprotein export from nucleus involved_inISOXPO6 (Homo sapiens)1624291 PMID:14592989RGDPMID:14592989
Xpo6Ratprotein export from nucleus involved_inISOXpo6 (Mus musculus)1624291 PMID:22323606RGDPMID:22323606
Xpo6Ratprotein export from nucleus involved_inIEAInterPro:IPR0400161600115GO_REF:0000002InterProGO_REF:0000002
Xpo6Ratprotein export from nucleus involved_inIBAMGI:2429950 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Xpo6Ratprotein export from nucleus involved_inIEAUniProtKB:Q924Z6 and ensembl:ENSMUSP000001305271600115GO_REF:0000107EnsemblGO_REF:0000107
Xpo6Ratprotein export from nucleus involved_inIEAUniProtKB:Q96QU8 and ensembl:ENSP000003027901600115GO_REF:0000107EnsemblGO_REF:0000107
Xpo6Ratprotein transport involved_inIEAUniProtKB-KW:KW-06531600115GO_REF:0000043UniProtGO_REF:0000043
1 to 10 of 10 rows

Cellular Component
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Xpo6Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Xpo6Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Xpo6Ratcytosol located_inISOXPO6 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Xpo6Ratcytosol located_inIEAUniProtKB:Q96QU8 and ensembl:ENSP000003027901600115GO_REF:0000107EnsemblGO_REF:0000107
Xpo6Ratnucleolus located_inISOXPO6 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Xpo6Ratnucleolus located_inIEAUniProtKB:Q96QU8 and ensembl:ENSP000003027901600115GO_REF:0000107EnsemblGO_REF:0000107
Xpo6Ratnucleoplasm located_inIEAUniProtKB:Q96QU8 and ensembl:ENSP000003027901600115GO_REF:0000107EnsemblGO_REF:0000107
Xpo6Ratnucleoplasm located_inISOXPO6 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Xpo6Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Xpo6Ratplasma membrane located_inISOXPO6 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Xpo6Ratplasma membrane located_inIEAUniProtKB:Q96QU8 and ensembl:ENSP000003027901600115GO_REF:0000107EnsemblGO_REF:0000107
Xpo6Ratprotein-containing complex part_ofISOXPO6 (Homo sapiens)1624291 PMID:28246125RGDPMID:28246125
Xpo6Ratprotein-containing complex part_ofIEAUniProtKB:Q96QU8 and ensembl:ENSP000003027901600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 13 of 13 rows

Molecular Function

  


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:12477932   PMID:14592989   PMID:22323606   PMID:28246125   PMID:30792230  



Xpo6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81190,102,719 - 190,192,138 (-)NCBIGRCr8
mRatBN7.21180,672,114 - 180,761,543 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,672,119 - 180,761,543 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,003,284 - 189,092,561 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01196,189,323 - 196,278,608 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01188,872,436 - 188,961,827 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01197,500,509 - 197,590,382 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1197,500,514 - 197,590,277 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01204,484,091 - 204,574,002 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,179,733 - 185,269,588NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1178,332,154 - 178,421,776 (-)NCBICelera
Cytogenetic Map1q36NCBI
XPO6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381628,097,976 - 28,211,965 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1628,097,976 - 28,211,965 (-)EnsemblGRCh38hg38GRCh38
GRCh371628,109,297 - 28,223,286 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361628,016,817 - 28,130,691 (-)NCBINCBI36Build 36hg18NCBI36
Celera1626,887,565 - 27,001,783 (-)NCBICelera
Cytogenetic Map16p12.1NCBI
HuRef1626,200,209 - 26,314,563 (-)NCBIHuRef
CHM1_11629,122,254 - 29,236,228 (-)NCBICHM1_1
T2T-CHM13v2.01628,378,417 - 28,492,441 (-)NCBIT2T-CHM13v2.0
Xpo6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397125,700,890 - 125,799,715 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7125,700,887 - 125,799,673 (-)EnsemblGRCm39 Ensembl
GRCm387126,101,718 - 126,200,539 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,101,715 - 126,200,501 (-)EnsemblGRCm38mm10GRCm38
MGSCv377133,245,232 - 133,343,922 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367125,892,866 - 125,991,556 (-)NCBIMGSCv36mm8
Celera7125,956,010 - 126,054,617 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.01NCBI
Xpo6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554936,172,860 - 6,299,451 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554936,172,860 - 6,265,269 (-)NCBIChiLan1.0ChiLan1.0
XPO6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21829,495,054 - 29,609,022 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11634,031,603 - 34,145,576 (-)NCBINHGRI_mPanPan1
PanPan1.11628,465,138 - 28,579,109 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1628,462,546 - 28,579,109 (-)Ensemblpanpan1.1panPan2
XPO6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1618,569,500 - 18,671,100 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl618,569,213 - 18,671,095 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha620,145,666 - 20,247,248 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,703,290 - 18,806,739 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,703,256 - 18,806,739 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1618,502,928 - 18,604,931 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0618,417,857 - 18,519,851 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,734,168 - 18,836,172 (+)NCBIUU_Cfam_GSD_1.0
Xpo6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344123,429,188 - 123,533,879 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650111,527,032 - 11,631,745 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650111,527,038 - 11,631,739 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XPO6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,772,096 - 18,880,067 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,772,058 - 18,880,650 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2319,004,241 - 19,112,483 (+)NCBISscrofa10.2Sscrofa10.2susScr3
XPO6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1525,794,919 - 25,911,767 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660683,776,791 - 3,893,904 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xpo6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478212,544,298 - 12,672,772 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Xpo6
473 total Variants

Predicted Target Of
Summary Value
Count of predictions:734
Count of miRNA genes:297
Interacting mature miRNAs:366
Transcripts:ENSRNOT00000022502, ENSRNOT00000043433
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 86 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat
61326Eae6Experimental allergic encephalomyelitis QTL 65.3body mass (VT:0001259)change in body weight (CMO:0002045)1172949660181830018Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat

1 to 10 of 86 rows
D1Smu10  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21182,657,959 - 182,658,086 (+)MAPPERmRatBN7.2
Rnor_6.01199,494,211 - 199,494,337NCBIRnor6.0
Rnor_5.01206,521,673 - 206,521,799UniSTSRnor5.0
RGSC_v3.41187,333,197 - 187,333,323UniSTSRGSC3.4
Celera1180,307,674 - 180,307,800UniSTS
Cytogenetic Map1q36UniSTS
D1Got166  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21182,657,961 - 182,658,182 (+)MAPPERmRatBN7.2
Rnor_6.01199,494,213 - 199,494,433NCBIRnor6.0
Rnor_5.01206,521,675 - 206,521,895UniSTSRnor5.0
RGSC_v3.41187,333,198 - 187,333,419RGDRGSC3.4
RGSC_v3.41187,333,199 - 187,333,419UniSTSRGSC3.4
RGSC_v3.11187,483,080 - 187,483,300RGD
Celera1180,307,676 - 180,307,896UniSTS
RH 2.0 Map1974.9RGD
Cytogenetic Map1q36UniSTS
RH130571  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,719,599 - 180,719,750 (+)MAPPERmRatBN7.2
Rnor_6.01197,547,952 - 197,548,102NCBIRnor6.0
Rnor_5.01206,504,318 - 206,504,468UniSTSRnor5.0
Rnor_5.01204,531,625 - 204,531,775UniSTSRnor5.0
RGSC_v3.41185,227,266 - 185,227,416UniSTSRGSC3.4
Celera1178,379,584 - 178,379,734UniSTS
Cytogenetic Map1q36UniSTS
AI010231  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21182,656,409 - 182,657,281 (+)MAPPERmRatBN7.2
Rnor_6.01199,492,662 - 199,493,532NCBIRnor6.0
Rnor_5.01206,519,934 - 206,520,804UniSTSRnor5.0
RGSC_v3.41187,331,648 - 187,332,518UniSTSRGSC3.4
Cytogenetic Map1q36UniSTS
RH125206  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,694,294 - 180,694,395 (+)MAPPERmRatBN7.2
Rnor_6.01197,522,688 - 197,522,788NCBIRnor6.0
Rnor_5.01204,506,270 - 204,506,370UniSTSRnor5.0
RGSC_v3.41185,201,912 - 185,202,012UniSTSRGSC3.4
Celera1178,354,302 - 178,354,402UniSTS
Cytogenetic Map1q36UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000022502   ⟹   ENSRNOP00000022502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1180,672,119 - 180,761,543 (-)Ensembl
Rnor_6.0 Ensembl1197,500,514 - 197,590,277 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000043433   ⟹   ENSRNOP00000047098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1180,719,952 - 180,761,543 (-)Ensembl
Rnor_6.0 Ensembl1197,548,304 - 197,590,277 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079044   ⟹   ENSRNOP00000074811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1180,672,119 - 180,739,808 (-)Ensembl
Rnor_6.0 Ensembl1197,549,097 - 197,568,165 (-)Ensembl
RefSeq Acc Id: NM_001011935   ⟹   NP_001011935
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81190,102,719 - 190,192,138 (-)NCBI
mRatBN7.21180,672,114 - 180,761,543 (-)NCBI
Rnor_6.01197,500,509 - 197,590,277 (-)NCBI
Rnor_5.01204,484,091 - 204,574,002 (-)NCBI
RGSC_v3.41185,179,733 - 185,269,588 (-)RGD
Celera1178,332,154 - 178,421,776 (-)RGD
Sequence:
RefSeq Acc Id: XM_008759870   ⟹   XP_008758092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81190,102,719 - 190,191,833 (-)NCBI
mRatBN7.21180,672,114 - 180,761,232 (-)NCBI
Rnor_6.01197,500,509 - 197,590,382 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107197   ⟹   XP_038963125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81190,102,719 - 190,191,833 (-)NCBI
mRatBN7.21180,672,114 - 180,761,232 (-)NCBI
RefSeq Acc Id: XM_039107205   ⟹   XP_038963133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81190,102,719 - 190,151,800 (-)NCBI
mRatBN7.21180,672,114 - 180,721,198 (-)NCBI
RefSeq Acc Id: XM_063286040   ⟹   XP_063142110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81190,102,719 - 190,191,833 (-)NCBI
RefSeq Acc Id: NP_001011935   ⟸   NM_001011935
- UniProtKB: G3V858 (UniProtKB/TrEMBL),   A6I931 (UniProtKB/TrEMBL),   A6I932 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758092   ⟸   XM_008759870
- Peptide Label: isoform X1
- UniProtKB: A6I932 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000047098   ⟸   ENSRNOT00000043433
Ensembl Acc Id: ENSRNOP00000074811   ⟸   ENSRNOT00000079044
Ensembl Acc Id: ENSRNOP00000022502   ⟸   ENSRNOT00000022502
Importin N-terminal

Name Modeler Protein Id AA Range Protein Structure
AF-G3V858-F1-model_v2 AlphaFold G3V858 1-1125 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13690394
Promoter ID:EPDNEW_R917
Type:initiation region
Name:Xpo6_1
Description:exportin 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01197,590,375 - 197,590,435EPDNEW


1 to 30 of 30 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-57476 BioCyc
Ensembl Genes ENSRNOG00000016722 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022502 ENTREZGENE
  ENSRNOT00000022502.9 UniProtKB/TrEMBL
  ENSRNOT00000043433.4 UniProtKB/TrEMBL
  ENSRNOT00000079044.2 UniProtKB/TrEMBL
  ENSRNOT00000169723 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Exportin-1/Importin-b-like UniProtKB/TrEMBL
  Importin-beta_N UniProtKB/TrEMBL
  XPO6 UniProtKB/TrEMBL
KEGG Report rno:293476 UniProtKB/TrEMBL
NCBI Gene 293476 ENTREZGENE
PANTHER EXPORTIN-6 UniProtKB/TrEMBL
  PTHR21452 UniProtKB/TrEMBL
Pfam IBN_N UniProtKB/TrEMBL
  Xpo1 UniProtKB/TrEMBL
PhenoGen Xpo6 PhenoGen
PROSITE IMPORTIN_B_NT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016722 RatGTEx
SMART IBN_N UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2K908_RAT UniProtKB/TrEMBL
  A6I931 ENTREZGENE, UniProtKB/TrEMBL
  A6I932 ENTREZGENE, UniProtKB/TrEMBL
  A6I933_RAT UniProtKB/TrEMBL
  G3V858 ENTREZGENE, UniProtKB/TrEMBL
  Q5XIQ0_RAT UniProtKB/TrEMBL
1 to 30 of 30 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Xpo6  exportin 6  Xpo6_predicted  exportin 6 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Xpo6_predicted  exportin 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED