Dzip1l (DAZ interacting zinc finger protein 1-like) - Rat Genome Database

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Gene: Dzip1l (DAZ interacting zinc finger protein 1-like) Rattus norvegicus
Analyze
Symbol: Dzip1l
Name: DAZ interacting zinc finger protein 1-like
RGD ID: 1311430
Description: Predicted to enable zinc ion binding activity. Predicted to be involved in cilium assembly and regulation of protein localization. Predicted to act upstream of or within several processes, including ciliary transition zone assembly; neural tube development; and protein localization to cilium. Predicted to be located in several cellular components, including cytoskeleton; intercellular bridge; and nucleoplasm. Predicted to be active in ciliary basal body and cytoplasm. Human ortholog(s) of this gene implicated in polycystic kidney disease 5. Orthologous to human DZIP1L (DAZ interacting zinc finger protein 1 like); INTERACTS WITH acetamide; acrylamide; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cilium assembly protein DZIP1L; DAZ interacting protein 1-like; DAZ-interacting protein 1-like protein; LOC315952; RGD1311430; similar to hypothetical protein FLJ32844; zinc finger protein DZIP1L
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88109,067,466 - 109,108,390 (+)NCBIGRCr8
mRatBN7.28100,188,414 - 100,229,077 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8100,194,999 - 100,228,988 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8105,861,625 - 105,899,003 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08104,060,927 - 104,098,305 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08101,903,461 - 101,940,839 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08107,875,659 - 107,916,298 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,875,991 - 107,916,294 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08107,299,410 - 107,339,685 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48104,507,601 - 104,542,280 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18104,527,055 - 104,561,735 (+)NCBI
Celera899,595,781 - 99,629,825 (+)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
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Original Reference(s)
Dzip1lRatgenetic disease  ISODZIP1L (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Dzip1lRatpolycystic kidney disease 5  ISODZIP1L (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 more ...
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Original Reference(s)
Dzip1lRatautosomal recessive polycystic kidney disease  ISODZIP1L (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28530676
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Original Reference(s)
Dzip1lRatautosomal recessive polycystic kidney disease  ISSDzip1l (Mus musculus)13592920OMIM:263200MouseDO 
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Original Reference(s)
Dzip1lRatpolycystic kidney disease 5  ISODZIP1L (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Dzip1lRat17beta-estradiol multiple interactionsISODZIP1L (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of DZIP1L mRNACTDPMID:30165855
Dzip1lRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISODzip1l (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of DZIP1L mRNACTDPMID:24680724
Dzip1lRat4-hydroxyphenyl retinamide increases expressionISODzip1l (Mus musculus)6480464Fenretinide results in increased expression of DZIP1L mRNACTDPMID:28973697
Dzip1lRatacetamide increases expressionEXP 6480464acetamide results in increased expression of DZIP1L mRNACTDPMID:31881176
Dzip1lRatacrylamide decreases expressionEXP 6480464Acrylamide results in decreased expression of DZIP1L mRNACTDPMID:28959563
Dzip1lRataflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of DZIP1L mRNACTDPMID:33354967
Dzip1lRatall-trans-retinoic acid increases expressionEXP 6480464Tretinoin results in increased expression of DZIP1L mRNACTDPMID:20488242
Dzip1lRatarsane multiple interactionsISODZIP1L (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of DZIP1L mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of DZIP1L mRNACTDPMID:39836092
Dzip1lRatarsenic atom multiple interactionsISODZIP1L (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of DZIP1L mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of DZIP1L mRNACTDPMID:39836092
Dzip1lRatarsenite(3-) multiple interactionsISODZIP1L (Homo sapiens)6480464arsenite inhibits the reaction [G3BP1 protein binds to DZIP1L mRNA]CTDPMID:32406909
Dzip1lRatazoxystrobin multiple interactionsEXP 6480464[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased methylation of DZIP1L geneCTDPMID:33854195
Dzip1lRatbenzo[a]pyrene affects methylationISODZIP1L (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of DZIP1L 5' UTR and Benzo(a)pyrene affects the methylation of DZIP1L intronCTDPMID:27901495 and PMID:30157460
Dzip1lRatbenzo[e]pyrene increases methylationISODZIP1L (Homo sapiens)6480464benzo(e)pyrene results in increased methylation of DZIP1L intronCTDPMID:30157460
Dzip1lRatbeta-naphthoflavone multiple interactionsEXP 6480464[Diethylnitrosamine co-treated with beta-Naphthoflavone] results in increased expression of DZIP1L mRNACTDPMID:18164116
Dzip1lRatbis(2-ethylhexyl) phthalate decreases expressionISODzip1l (Mus musculus)6480464Diethylhexyl Phthalate results in decreased expression of DZIP1L mRNACTDPMID:34319233
Dzip1lRatbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of DZIP1L mRNACTDPMID:30816183 and PMID:32528016
Dzip1lRatbisphenol A decreases expressionISODZIP1L (Homo sapiens)6480464bisphenol A results in decreased expression of DZIP1L mRNACTDPMID:31715268
Dzip1lRatbutanal decreases expressionISODZIP1L (Homo sapiens)6480464butyraldehyde results in decreased expression of DZIP1L mRNACTDPMID:26079696
Dzip1lRatchlorpyrifos multiple interactionsEXP 6480464[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased methylation of DZIP1L geneCTDPMID:33854195
Dzip1lRatcholine multiple interactionsISODzip1l (Mus musculus)6480464[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of DZIP1L mRNACTDPMID:20938992

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Biological Process
1 to 20 of 22 rows

  
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Original Reference(s)
Dzip1lRatciliary transition zone assembly acts_upstream_of_or_withinISODzip1l (Mus musculus)1624291MGI:6357158 PMID:29487109RGDPMID:29487109
Dzip1lRatciliary transition zone assembly acts_upstream_of_or_withinIEAUniProtKB:Q499E4 and ensembl:ENSMUSP000001085061600115GO_REF:0000107EnsemblGO_REF:0000107
Dzip1lRatcilium assembly involved_inISSUniProtKB:Q8IYY41600115GO_REF:0000024UniProtGO_REF:0000024
Dzip1lRatcilium assembly acts_upstream_of_or_withinIEAUniProtKB:Q499E4 and ensembl:ENSMUSP000001085061600115GO_REF:0000107EnsemblGO_REF:0000107
Dzip1lRatcilium assembly acts_upstream_of_or_withinISODzip1l (Mus musculus)1624291MGI:2442827 more ...RGDPMID:29487109
Dzip1lRatcilium assembly involved_inIBAMGI:1914311 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Dzip1lRatcilium assembly involved_inIEAUniProtKB:Q8IYY4 and ensembl:ENSP000003321481600115GO_REF:0000107EnsemblGO_REF:0000107
Dzip1lRatcilium assembly involved_inIEAARBA:ARBA000278371600115GO_REF:0000117UniProtGO_REF:0000117
Dzip1lRatcilium assembly involved_inISODZIP1L (Homo sapiens)1624291 PMID:19852954 and PMID:28530676RGDPMID:19852954 and PMID:28530676
Dzip1lRatfloor plate development acts_upstream_of_or_withinIEAUniProtKB:Q499E4 and ensembl:ENSMUSP000001085061600115GO_REF:0000107EnsemblGO_REF:0000107
Dzip1lRatfloor plate development acts_upstream_of_or_withinISODzip1l (Mus musculus)1624291MGI:1920989 PMID:29487109RGDPMID:29487109
Dzip1lRatneural tube patterning acts_upstream_of_or_withinISODzip1l (Mus musculus)1624291MGI:2442827 PMID:29487109RGDPMID:29487109
Dzip1lRatneural tube patterning acts_upstream_of_or_withinIEAUniProtKB:Q499E4 and ensembl:ENSMUSP000001085061600115GO_REF:0000107EnsemblGO_REF:0000107
Dzip1lRatprotein localization to cilium acts_upstream_of_or_withinIEAUniProtKB:Q499E4 and ensembl:ENSMUSP000001085061600115GO_REF:0000107EnsemblGO_REF:0000107
Dzip1lRatprotein localization to cilium acts_upstream_of_or_withinISODzip1l (Mus musculus)1624291MGI:6357158 PMID:29487109RGDPMID:29487109
Dzip1lRatprotein localization to organelle acts_upstream_of_or_withinISODzip1l (Mus musculus)1624291MGI:6357158 PMID:29487109RGDPMID:29487109
Dzip1lRatprotein localization to organelle acts_upstream_of_or_withinIEAUniProtKB:Q499E4 and ensembl:ENSMUSP000001085061600115GO_REF:0000107EnsemblGO_REF:0000107
Dzip1lRatregulation of protein localization involved_inISSUniProtKB:Q8IYY41600115GO_REF:0000024UniProtGO_REF:0000024
Dzip1lRatregulation of protein localization involved_inISODZIP1L (Homo sapiens)1624291 PMID:28530676RGDPMID:28530676
Dzip1lRatregulation of protein localization involved_inIEAUniProtKB:Q8IYY4 and ensembl:ENSP000003321481600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
1 to 20 of 32 rows

  
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Original Reference(s)
Dzip1lRataxoneme located_inIEAUniProtKB:Q499E4 and ensembl:ENSMUSP000001085061600115GO_REF:0000107EnsemblGO_REF:0000107
Dzip1lRataxoneme located_inISODzip1l (Mus musculus)1624291 PMID:29487109RGDPMID:29487109
Dzip1lRatcell projection located_inIEAUniProtKB-KW:KW-09661600115GO_REF:0000043UniProtGO_REF:0000043
Dzip1lRatcentriole located_inISSUniProtKB:Q8IYY41600115GO_REF:0000024UniProtGO_REF:0000024
Dzip1lRatcentriole located_inIEAUniProtKB:Q8IYY4 and ensembl:ENSP000003321481600115GO_REF:0000107EnsemblGO_REF:0000107
Dzip1lRatcentriole located_inISODzip1l (Mus musculus)1624291 PMID:29487109RGDPMID:29487109
Dzip1lRatcentriole located_inIEAUniProtKB:Q499E4 and ensembl:ENSMUSP000001085061600115GO_REF:0000107EnsemblGO_REF:0000107
Dzip1lRatcentriole located_inISODZIP1L (Homo sapiens)1624291 PMID:19852954 and PMID:28530676RGDPMID:19852954 and PMID:28530676
Dzip1lRatcentriole located_inIEAUniProtKB-SubCell:SL-00461600115GO_REF:0000044UniProtGO_REF:0000044
Dzip1lRatciliary basal body located_inISSUniProtKB:Q8IYY41600115GO_REF:0000024UniProtGO_REF:0000024
Dzip1lRatciliary basal body located_inISODzip1l (Mus musculus)1624291 PMID:29487109RGDPMID:29487109
Dzip1lRatciliary basal body is_active_inIBAFB:FBgn0039201 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Dzip1lRatciliary basal body located_inISODZIP1L (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Dzip1lRatciliary basal body located_inISODZIP1L (Homo sapiens)1624291 PMID:19852954 and PMID:28530676RGDPMID:19852954 and PMID:28530676
Dzip1lRatciliary basal body located_inIEAUniProtKB:Q8IYY4 and ensembl:ENSP000003321481600115GO_REF:0000107EnsemblGO_REF:0000107
Dzip1lRatciliary basal body located_inIEAUniProtKB:Q499E4 and ensembl:ENSMUSP000001085061600115GO_REF:0000107EnsemblGO_REF:0000107
Dzip1lRatcilium located_inIEAUniProtKB:Q8IYY4 and ensembl:ENSP000003321481600115GO_REF:0000107EnsemblGO_REF:0000107
Dzip1lRatcilium located_inIEAUniProtKB-KW:KW-09691600115GO_REF:0000043UniProtGO_REF:0000043
Dzip1lRatcilium located_inISODZIP1L (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Dzip1lRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
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Molecular Function

  
Object Symbol
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Original Reference(s)
Dzip1lRatmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Dzip1lRatprotein binding enablesISODZIP1L (Homo sapiens)1624291UniProtKB:O75400-2 more ...RGDPMID:25416956 more ...
Dzip1lRatprotein binding enablesISODzip1l (Mus musculus)1624291PR:Q8BMD2 more ...RGDPMID:29487109
Dzip1lRatzinc ion binding enablesIEAUniProtKB-KW:KW-08631600115GO_REF:0000043UniProtGO_REF:0000043


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
PMID:19852954   PMID:28530676   PMID:29487109  



Dzip1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88109,067,466 - 109,108,390 (+)NCBIGRCr8
mRatBN7.28100,188,414 - 100,229,077 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8100,194,999 - 100,228,988 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8105,861,625 - 105,899,003 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08104,060,927 - 104,098,305 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08101,903,461 - 101,940,839 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08107,875,659 - 107,916,298 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,875,991 - 107,916,294 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08107,299,410 - 107,339,685 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48104,507,601 - 104,542,280 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18104,527,055 - 104,561,735 (+)NCBI
Celera899,595,781 - 99,629,825 (+)NCBICelera
Cytogenetic Map8q31NCBI
DZIP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383138,061,990 - 138,115,608 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3138,061,990 - 138,115,818 (-)EnsemblGRCh38hg38GRCh38
GRCh373137,780,832 - 137,834,450 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363139,263,522 - 139,317,141 (-)NCBINCBI36Build 36hg18NCBI36
Build 343139,263,531 - 139,317,149NCBI
Celera3136,205,489 - 136,259,231 (-)NCBICelera
Cytogenetic Map3q22.3NCBI
HuRef3135,155,607 - 135,209,215 (-)NCBIHuRef
CHM1_13137,744,704 - 137,798,269 (-)NCBICHM1_1
T2T-CHM13v2.03140,788,462 - 140,856,195 (-)NCBIT2T-CHM13v2.0
Dzip1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39999,511,448 - 99,552,128 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl999,511,549 - 99,551,309 (+)EnsemblGRCm39 Ensembl
GRCm38999,629,501 - 99,670,075 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl999,629,496 - 99,669,256 (+)EnsemblGRCm38mm10GRCm38
MGSCv37999,530,014 - 99,569,675 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36999,438,947 - 99,478,608 (+)NCBIMGSCv36mm8
Celera999,165,989 - 99,205,734 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.93NCBI
Dzip1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955501897,692 - 965,626 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955501895,245 - 965,626 (+)NCBIChiLan1.0ChiLan1.0
DZIP1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22135,922,910 - 136,020,795 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13135,971,555 - 136,025,449 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03135,089,250 - 135,143,117 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13142,540,798 - 142,591,297 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3142,541,624 - 142,582,817 (-)Ensemblpanpan1.1panPan2
DZIP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12334,285,223 - 34,334,957 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2334,285,864 - 34,331,680 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2334,269,895 - 34,327,283 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02334,817,204 - 34,874,635 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2334,817,209 - 34,872,059 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12334,499,127 - 34,556,539 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02334,564,569 - 34,621,916 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02334,815,608 - 34,872,988 (-)NCBIUU_Cfam_GSD_1.0
Dzip1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560273,697,867 - 73,730,162 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936540436,161 - 469,951 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936540437,638 - 469,945 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DZIP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1378,861,024 - 78,916,229 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11378,861,007 - 78,916,633 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21386,587,300 - 86,599,588 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DZIP1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11552,425,472 - 52,480,484 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1552,428,570 - 52,480,887 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604125,439,531 - 25,494,393 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dzip1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473014,568,382 - 14,619,272 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473014,568,625 - 14,619,673 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Dzip1l
596 total Variants


Assembly: mRatBN7.2
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
8 100210175 100210176 C T snv F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), BDIX/NemOdaMcwi (2022), F344/DuCrl (2019NG), F344/DuCrl (2021), F344/NHsd (2021), F344/StmMcwi (2019), FHH/EurMcwi (2019NG), FXLE14/StmMcwi (2023), FXLE12/StmMcwi (2023), European Variation Archive Release 3, European Variation Archive Release 4, European Variation Archive Release 6, FXLE16/Stm (2020), FXLE18/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), SR/JrHsd (2020), SS/JrHsdMcwi (2019), BUF/MnaMcwi (2022), F344/DuCrl (2019NG), FXLE12/StmMcwi (2021), FXLE12/Stm (2019NG), FXLE13/Stm (2019NG), FXLE14/Stm (2019NG), FXLE15/StmMcwi (2021), FXLE15/Stm (2019NG), FXLE17/Stm (2019NG), FXLE19/StmMcwi (2022), FXLE20/Stm (2019NG), FXLE23/Stm (2022), FXLE25/Stm (2022), FXLE26/Stm (2022), LEXF10B/StmMcwi (2022), LEXF10C/Stm (2022), LEXF1C/StmMcwi (2021), LEXF2A/Stm (2022), LEXF2C/StmMcwi (2022), LEXF5/Stm (2019NG), LEXF6B/Stm (2019NG), LEXF7A/Stm (2019NG), LEXF7B/StmMcwi (2022), LEXF7C/StmMcwi (2022), LEXF8A/StmMcwi (2021), LEXF8D/Stm (2022), LEXF9/StmMcwi (2022), SS/HsdMcwiCrl (2021), SS/JrHsdMcwi (2019NG), SS/JrHsd (2021), LEXF2A/StmMcwi (2023), FXLE26/StmMcwi (2023), FXLE13/StmMcwi (2023), LEXF5/StmMcwi (2023), FXLE22/StmMcwi (2023), FXLE20/StmMcwi (2023), LEXF8D/StmMcwi (2023), FXLE23/StmMcwi (2023), FXLE25/StmMcwi (2023), LEXF10C/StmMcwi (2023), FXLE17/StmMcwi (2023), LEXF6B/StmMcwi (2023), FXLE15/StmMcwi (2023), FXLE21/StmMcwi (2023) View more Information


Assembly: RGSC_v3.4
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
8 104522775 104522776 C T snv FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MDC), F344/NRrrc (KNAW), LE/Stm (KNAW), FHH/EurMcwi (MDC) View more Information


Assembly: Rnor_5.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
8 107309097 107309098 T A snv LE/Stm (KyushuU) View more Information
8 107321148 107321149 C T snv GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), LH/MavRrrc (KNAW), LL/MavRrrc (KNAW), LN/MavRrrc (KNAW), SR/JrHsd (KNAW), SS/Jr (KNAW), SS/JrHsdMcwi (KNAW), F344/NRrrc (SOLiD) (KNAW), F344/NCrl (KNAW), F344/NHsd (KNAW), FHH/EurMcwi (KNAW), FHL/EurMcwi (KNAW), LE/Stm (Illumina) (KNAW), LE/Stm (SOLiD) (KNAW), SBH/Ygl (KNAW), F344/NRrrc (Illumina) (KNAW), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), F344/NSlc (KyushuU), F344/Stm (KyushuU), F344/Jcl (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), ZFDM (KyushuU), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW) View more Information


Assembly: Rnor_6.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
8 107897393 107897394 C T snv CDS, SS/JrHsdMcwi (2019), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/NRrrc (MCW), FHL/EurMcwi (RGD), LE/Stm (RGD), LN/MavRrrc (RGD), SBH/Ygl (RGD), SR/JrHsd (RGD), SS/Jr (RGD), SS/JrHsdMcwi (RGD), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), SR/JrHsd (2020), FHH/EurMcwi (MCW) View more Information

Predicted Target Of
Summary Value
Count of predictions:208
Count of miRNA genes:135
Interacting mature miRNAs:169
Transcripts:ENSRNOT00000019902
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 29 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)888612425107550209Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat

1 to 10 of 29 rows
RH136812  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28100,218,670 - 100,218,833 (+)MAPPERmRatBN7.2
Rnor_6.08107,905,892 - 107,906,054NCBIRnor6.0
Rnor_5.08107,329,276 - 107,329,438UniSTSRnor5.0
RGSC_v3.48104,531,301 - 104,531,463UniSTSRGSC3.4
Celera899,619,532 - 99,619,694UniSTS
Cytogenetic Map8q31UniSTS
RH139924  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28100,218,447 - 100,218,627 (+)MAPPERmRatBN7.2
Rnor_6.08107,905,669 - 107,905,848NCBIRnor6.0
Rnor_5.08107,329,053 - 107,329,232UniSTSRnor5.0
RGSC_v3.48104,531,078 - 104,531,257UniSTSRGSC3.4
Celera899,619,309 - 99,619,488UniSTS
RH 3.4 Map81039.89UniSTS
Cytogenetic Map8q31UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000019902   ⟹   ENSRNOP00000019902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8100,194,999 - 100,228,988 (+)Ensembl
Rnor_6.0 Ensembl8107,882,219 - 107,916,209 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090299   ⟹   ENSRNOP00000074346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8100,194,999 - 100,228,988 (+)Ensembl
Rnor_6.0 Ensembl8107,875,991 - 107,916,294 (+)Ensembl
RefSeq Acc Id: NM_001014095   ⟹   NP_001014117
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88109,074,320 - 109,108,305 (+)NCBI
mRatBN7.28100,194,999 - 100,228,988 (+)NCBI
Rnor_6.08107,882,219 - 107,916,209 (+)NCBI
Rnor_5.08107,299,410 - 107,339,685 (+)NCBI
RGSC_v3.48104,507,601 - 104,542,280 (+)RGD
Celera899,595,781 - 99,629,825 (+)RGD
Sequence:
RefSeq Acc Id: XM_006243626   ⟹   XP_006243688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88109,067,466 - 109,108,390 (+)NCBI
mRatBN7.28100,188,414 - 100,227,848 (+)NCBI
Rnor_6.08107,875,659 - 107,916,298 (+)NCBI
Rnor_5.08107,299,410 - 107,339,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243627   ⟹   XP_006243689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88109,067,962 - 109,108,390 (+)NCBI
mRatBN7.28100,188,663 - 100,227,848 (+)NCBI
Rnor_6.08107,875,802 - 107,916,298 (+)NCBI
Rnor_5.08107,299,410 - 107,339,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063265593   ⟹   XP_063121663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88109,067,466 - 109,108,390 (+)NCBI
RefSeq Acc Id: XM_063265594   ⟹   XP_063121664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88109,067,962 - 109,108,390 (+)NCBI
RefSeq Acc Id: XR_010053982
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88109,067,466 - 109,098,550 (+)NCBI
1 to 11 of 11 rows
Protein RefSeqs NP_001014117 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243688 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243689 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121663 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121664 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83786 (Get FASTA)   NCBI Sequence Viewer  
  EDL77434 (Get FASTA)   NCBI Sequence Viewer  
  EDL77435 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019902
  ENSRNOP00000074346
GenBank Protein Q5XIA0 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_001014117   ⟸   NM_001014095
- UniProtKB: Q5XIA0 (UniProtKB/Swiss-Prot),   A6I2E2 (UniProtKB/TrEMBL),   A0A8L2R8N8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243688   ⟸   XM_006243626
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R8N8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243689   ⟸   XM_006243627
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R8N8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074346   ⟸   ENSRNOT00000090299
Ensembl Acc Id: ENSRNOP00000019902   ⟸   ENSRNOT00000019902
C2H2-type

Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIA0-F1-model_v2 AlphaFold Q5XIA0 1-776 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696220
Promoter ID:EPDNEW_R6738
Type:multiple initiation site
Name:Dzip1l_1
Description:DAZ interacting zinc finger protein 1-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08107,875,966 - 107,876,026EPDNEW


1 to 22 of 22 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-29387 BioCyc
Ensembl Genes ENSRNOG00000014746 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000019902 ENTREZGENE
  ENSRNOT00000090299 ENTREZGENE
IMAGE_CLONE IMAGE:7097259 IMAGE-MGC_LOAD
InterPro DZIP1_N UniProtKB/Swiss-Prot
  DZIP_RILPL UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report rno:315952 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94765 IMAGE-MGC_LOAD
NCBI Gene 315952 ENTREZGENE
PANTHER ZINC FINGER PROTEIN DZIP1 UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN DZIP1L UniProtKB/Swiss-Prot
Pfam Dzip-like_N UniProtKB/Swiss-Prot
PhenoGen Dzip1l PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014746 RatGTEx
UniProt A0A8L2R8N8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2UJI0_RAT UniProtKB/TrEMBL
  A6I2E2 ENTREZGENE, UniProtKB/TrEMBL
  DZI1L_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-06-05 Dzip1l  DAZ interacting zinc finger protein 1-like  Dzip1l  DAZ interacting protein 1-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Dzip1l  DAZ interacting protein 1-like  RGD1311430  similar to hypothetical protein FLJ32844  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1311430  similar to hypothetical protein FLJ32844  RGD1311430_predicted  similar to hypothetical protein FLJ32844 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311430_predicted  similar to hypothetical protein FLJ32844 (predicted)  LOC315952_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315952_predicted  similar to hypothetical protein FLJ32844 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL