rs3321432417 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Variant: rs3321432417 -  Rattus norvegicus

RGD ID: 144828812
RS ID: rs3321432417
Associated ss Id(s): ss11824237517
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Dzip1l  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
mRatBN7.2 8 100,210,175
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Dzip1l
Accession:NM_001014095
Location:EXON
Amino Acid Prediction: H to Y (nonsynonymous)
Amino Acid Position: 344
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment   NO -2.024 -3.767 +1.743 260   NP_001014117   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MQYSVATADGLSGPPSGAYTLPTFKFQPRRESIDWRRISAVDVDRVARELDVATLQENIAGVTFCNLDREVCNHCRQPVD
PVLLKVLRLAQLIIEYLLHCQDCLSASVAQLEARLQASLGQQQRGQQELGRQADELKGVREESRRRRKMISTLQQLLLQT
GAHSYHTCHLCDKTFMNATFLRGHIQRRHAGMAEVGKQKQEQQLGEVLEELRAKLKWTQGELEAQREAERQRQAQELEMI
RQREIEAKKKFDEWKEKERSKLYGEIDKLKQLFWDEFKTVANQNSTLEEKLKVLQSYSMTESHLGSLRDEESEERLKHAQ
ELQALREKMDIQKTEWKRKMKALYEERAAERRQLQEENERLHVTLSQDQKKAAAQSQRHINALRAQLQEQARLIESQEET
IQTLSFRRMEEVQEVPKAVVTEEDSSEEELEASLEEQQEQRKVLAALRNNPAWLKQFRPILEDTLEEKLEGMGIKRGTKG
ISAQTVRRLEPLLRTQREQTARSFREFLSLREKLNQEVSSRAKKRWEGTAVVPQPDGQPPVKSQRTTLATREVRPKTRTL
TVALPSKPAEPSTSTPRGHSSHGPGLTQVSTPIPRPRVHGPSSTPVSPGPGLSTPPFSSEEEPEGDVVQRVSLQPPKVLP
RSAPQPEDNWGWSDSETSEESAQSPGKGSDGLASSATLVQSMVKNLEKQLETPAKKPSGGVNMFLRPNTALQRSSTPARK
TQLSEDESDLEISSLEDLSHDLGPKGKPTPLSHSKLPEKFDASPWSSGSRPRIPGW*

Gene Symbol:Dzip1l
Accession:XM_006243626
Location:EXON
Amino Acid Prediction: H to Y (nonsynonymous)
Amino Acid Position: 344
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment     -2.024 -3.767 +1.743 260   XP_006243688   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MQYSVATADGLSGPPSGAYTLPTFKFQPRRESIDWRRISAVDVDRVARELDVATLQENIAGVTFCNLDREVCNHCRQPVD
PVLLKVLRLAQLIIEYLLHCQDCLSASVAQLEARLQASLGQQQRGQQELGRQADELKGVREESRRRRKMISTLQQLLLQT
GAHSYHTCHLCDKTFMNATFLRGHIQRRHAGMAEVGKQKQEQQLGEVLEELRAKLKWTQGELEAQREAERQRQAQELEMI
RQREIEAKKKFDEWKEKERSKLYGEIDKLKQLFWDEFKTVANQNSTLEEKLKVLQSYSMTESHLGSLRDEESEERLKHAQ
ELQALREKMDIQKTEWKRKMKALYEERAAERRQLQEENERLHVTLSQDQKKAAAQSQRHINALRAQLQEQARLIESQEET
IQTLSFRRMEEVQEVPKAVVTEEDSSEEELEASLEEQQEQRKVLAALRNNPAWLKQFRPILEDTLEEKLEGMGIKRGTKG
ISAQTVRRLEPLLRTQREQTARSFREFLSLREKLNQEVSSRAKKRWEGTAVVPQPDGQPPVKSQRTTLATREVRPKTRTL
TVALPSKPAEPSTSTPRGHSSHGPGLTQVSTPIPRPRVHGPSSTPVSPGPGLSSTPPFSSEEEPEGDVVQRVSLQPPKVL
PRSAPQPEDNWGWSDSETSEESAQSPGKGSDGLASSATLVQSMVKNLEKQLETPAKKPSGGVNMFLRPNTALQRSSTPAR
KTQLSEDESDLEISSLEDLSHDLGPKGKPTPLSHSKLPEKFDASPWSSGSRPRIPGW*

Gene Symbol:Dzip1l
Accession:XM_006243627
Location:EXON
Amino Acid Prediction: H to Y (nonsynonymous)
Amino Acid Position: 344
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment     -2.024 -3.767 +1.743 260   XP_006243689   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MQYSVATADGLSGPPSGAYTLPTFKFQPRRESIDWRRISAVDVDRVARELDVATLQENIAGVTFCNLDREVCNHCRQPVD
PVLLKVLRLAQLIIEYLLHCQDCLSASVAQLEARLQASLGQQQRGQQELGRQADELKGVREESRRRRKMISTLQQLLLQT
GAHSYHTCHLCDKTFMNATFLRGHIQRRHAGMAEVGKQKQEQQLGEVLEELRAKLKWTQGELEAQREAERQRQAQELEMI
RQREIEAKKKFDEWKEKERSKLYGEIDKLKQLFWDEFKTVANQNSTLEEKLKVLQSYSMTESHLGSLRDEESEERLKHAQ
ELQALREKMDIQKTEWKRKMKALYEERAAERRQLQEENERLHVTLSQDQKKAAAQSQRHINALRAQLQEQARLIESQEET
IQTLSFRRMEEVQEVPKAVVTEEDSSEEELEASLEEQQEQRKVLAALRNNPAWLKQFRPILEDTLEEKLEGMGIKRGTKG
ISAQTVRRLEPLLRTQREQTARSFREFLSLREKLNQEVSSRAKKRWEGTAVVPQPDGQPPVKSQRTTLATREVRPKTRTL
TVALPSKPAEPSTSTPRGHSSHGPGLTQVSTPIPRPRVHGPSSTPVSPGPGLSSTPPFSSEEEPEGDVVQRVSLQPPKVL
PRSAPQPEDNWGWSDSETSEESAQSPGKGSDGLASSATLVQSMVKNLEKQLETPAKKPSGGVNMFLRPNTALQRSSTPAR
KTQLSEDESDLEISSLEDLSHDLGPKGKPTPLSHSKLPEKFDASPWSSGSRPRIPGW*
1 to 12 of 12 rows
FXLE18/Stm (2020) F344/DuCrl (2019) F344/NCrl (2019) F344/N (2020) F344/Stm (2019) FHH/EurMcwi (2019)
FXLE16/Stm (2020) LN/MavRrrcAek (2020) LEXF11/Stm (2020) LEXF1A/Stm (2019) LEXF1C/Stm (2019) LEXF2B/Stm (2019)
LEXF3/Stm (2020) LEXF4/Stm (2020) LE/Stm (2019) LH/MavRrrcAek (2020) LL/MavRrrcAek (2020) F344/StmMcwi (2019)
LEXF10A/StmMcwi (2020) SR/JrHsd (2020) SS/JrHsdMcwi (2019) BDIX/NemOdaMcwi (2022) BUF/MnaMcwi (2022) F344/DuCrl (2019NG)
F344/DuCrl (2019NG) F344/DuCrl (2021) F344/NHsd (2021) FXLE12/StmMcwi (2023) FHH/EurMcwi (2019NG) FXLE12/StmMcwi (2021)
FXLE12/Stm (2019NG) FXLE13/Stm (2019NG) FXLE14/Stm (2019NG) FXLE15/StmMcwi (2021) FXLE15/Stm (2019NG) FXLE17/Stm (2019NG)
FXLE19/StmMcwi (2022) FXLE20/Stm (2019NG) FXLE23/Stm (2022) FXLE25/Stm (2022) FXLE26/Stm (2022) LEXF10B/StmMcwi (2022)
LEXF10C/Stm (2022) LEXF1C/StmMcwi (2021) LEXF2A/Stm (2022) LEXF2C/StmMcwi (2022) LEXF5/Stm (2019NG) LEXF6B/Stm (2019NG)
LEXF7A/Stm (2019NG) LEXF7B/StmMcwi (2022) LEXF7C/StmMcwi (2022) LEXF8A/StmMcwi (2021) LEXF8D/Stm (2022) LEXF9/StmMcwi (2022)
SS/HsdMcwiCrl (2021) SS/JrHsdMcwi (2019NG) SS/JrHsd (2021) LEXF2A/StmMcwi (2023) FXLE26/StmMcwi (2023) FXLE13/StmMcwi (2023)
LEXF5/StmMcwi (2023) FXLE22/StmMcwi (2023) FXLE20/StmMcwi (2023) LEXF8D/StmMcwi (2023) FXLE23/StmMcwi (2023) FXLE25/StmMcwi (2023)
LEXF10C/StmMcwi (2023) FXLE17/StmMcwi (2023) LEXF6B/StmMcwi (2023) FXLE15/StmMcwi (2023) FXLE14/StmMcwi (2023) FXLE21/StmMcwi (2023)
1 to 12 of 12 rows