Zbtb38 (zinc finger and BTB domain containing 38) - Rat Genome Database

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Gene: Zbtb38 (zinc finger and BTB domain containing 38) Rattus norvegicus
Analyze
Symbol: Zbtb38
Name: zinc finger and BTB domain containing 38
RGD ID: 1310136
Description: Enables DNA-binding transcription factor activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleus. Orthologous to human ZBTB38 (zinc finger and BTB domain containing 38); PARTICIPATES IN DNA modification pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC315936; RGD1310136; similar to kaiso protein; zenon; zinc finger and BTB domain-containing protein 38; zinc finger protein expressed in neurons; zinc finger transcription factor Kaiso
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88106,124,181 - 106,231,215 (-)NCBIGRCr8
mRatBN7.2897,284,617 - 97,288,518 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl897,280,993 - 97,485,625 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8102,950,345 - 102,954,245 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08101,149,591 - 101,153,491 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0898,988,547 - 98,992,447 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08104,566,999 - 104,694,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8104,589,621 - 104,593,625 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08104,013,746 - 104,141,365 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48101,782,699 - 101,786,600 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18101,802,153 - 101,806,055 (-)NCBI
Celera896,727,009 - 96,730,910 (-)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 85 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zbtb38Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of ZBTB38 mRNA]CTDPMID:31150632
Zbtb38Rat(-)-epigallocatechin 3-gallate multiple interactionsISOZBTB38 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of ZBTB38 mRNACTDPMID:22079256
Zbtb38Rat1,2-dichloroethane decreases expressionISOZbtb38 (Mus musculus)6480464ethylene dichloride results in decreased expression of ZBTB38 mRNACTDPMID:28960355
Zbtb38Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of ZBTB38 mRNACTDPMID:29097150
Zbtb38Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of ZBTB38 mRNACTDPMID:32145629
Zbtb38Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOZbtb38 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of ZBTB38 mRNACTDPMID:24058054
Zbtb38Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOZBTB38 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of ZBTB38 mRNACTDPMID:11489354 more ...
Zbtb38Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOZbtb38 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of ZBTB38 mRNACTDPMID:24680724
Zbtb38Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOZBTB38 (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the expression of ZBTB38 mRNACTDPMID:22298810
Zbtb38Rat2-palmitoylglycerol increases expressionISOZBTB38 (Homo sapiens)64804642-palmitoylglycerol results in increased expression of ZBTB38 mRNACTDPMID:37199045
Zbtb38Rat4,4'-sulfonyldiphenol decreases expressionISOZbtb38 (Mus musculus)6480464bisphenol S results in decreased expression of ZBTB38 mRNACTDPMID:39298647
Zbtb38Rat4,4'-sulfonyldiphenol affects methylationISOZbtb38 (Mus musculus)6480464bisphenol S affects the methylation of ZBTB38 geneCTDPMID:31683443
Zbtb38Ratacetamide decreases expressionEXP 6480464acetamide results in decreased expression of ZBTB38 mRNACTDPMID:31881176
Zbtb38Ratacrylamide decreases expressionEXP 6480464Acrylamide results in decreased expression of ZBTB38 mRNACTDPMID:28959563
Zbtb38Ratacrylamide decreases expressionISOZbtb38 (Mus musculus)6480464Acrylamide results in decreased expression of ZBTB38 mRNACTDPMID:30807115
Zbtb38Rataflatoxin B1 decreases methylationISOZBTB38 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of ZBTB38 geneCTDPMID:27153756
Zbtb38Ratamphetamine decreases expressionEXP 6480464Amphetamine results in decreased expression of ZBTB38 mRNACTDPMID:30779732
Zbtb38Ratarsane multiple interactionsISOZBTB38 (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of ZBTB38 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of ZBTB38 mRNACTDPMID:39836092
Zbtb38Ratarsenic atom multiple interactionsISOZBTB38 (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of ZBTB38 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of ZBTB38 mRNACTDPMID:39836092
Zbtb38Ratarsenite(3-) multiple interactionsISOZBTB38 (Homo sapiens)6480464arsenite inhibits the reaction [G3BP1 protein binds to ZBTB38 mRNA]CTDPMID:32406909

1 to 20 of 85 rows

Biological Process
1 to 9 of 9 rows

  
1 to 9 of 9 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zbtb38Ratchromosome located_inIEAUniProtKB-SubCell:SL-04681600115GO_REF:0000044UniProtGO_REF:0000044
Zbtb38Ratchromosome located_inIEAUniProtKB-KW:KW-01581600115GO_REF:0000043UniProtGO_REF:0000043
Zbtb38Ratnucleoplasm located_inISOZBTB38 (Homo sapiens)1624291 RGDGO_REF:0000052
Zbtb38Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Zbtb38Ratnucleus located_inISOZBTB38 (Homo sapiens)1624291 PMID:16354688RGDPMID:16354688
Zbtb38Ratnucleus located_inIDA 8553663PMID:15713629UniProt 
Zbtb38Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044

Molecular Function
1 to 9 of 9 rows

  
1 to 9 of 9 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zbtb38RatDNA modification pathway   ISOZBTB38 (Homo sapiens)8695954 RGD 

#
Reference Title
Reference Citation
1. On how mammalian transcription factors recognize methylated DNA. Buck-Koehntop BA and Defossez PA, Epigenetics. 2013 Feb;8(2):131-7. doi: 10.4161/epi.23632. Epub 2013 Jan 16.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ZENON, a novel POZ Kruppel-like DNA binding protein associated with differentiation and/or survival of late postmitotic neurons. Kiefer H, etal., Mol Cell Biol. 2005 Mar;25(5):1713-29.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
PMID:16354688   PMID:22082260   PMID:22516433   PMID:24726359  



Zbtb38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88106,124,181 - 106,231,215 (-)NCBIGRCr8
mRatBN7.2897,284,617 - 97,288,518 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl897,280,993 - 97,485,625 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8102,950,345 - 102,954,245 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08101,149,591 - 101,153,491 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0898,988,547 - 98,992,447 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08104,566,999 - 104,694,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8104,589,621 - 104,593,625 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08104,013,746 - 104,141,365 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48101,782,699 - 101,786,600 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18101,802,153 - 101,806,055 (-)NCBI
Celera896,727,009 - 96,730,910 (-)NCBICelera
Cytogenetic Map8q31NCBI
ZBTB38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383141,324,186 - 141,449,792 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3141,324,213 - 141,449,792 (+)EnsemblGRCh38hg38GRCh38
GRCh373141,043,028 - 141,168,634 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363142,525,745 - 142,651,324 (+)NCBINCBI36Build 36hg18NCBI36
Celera3139,466,550 - 139,592,174 (+)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3138,418,028 - 138,543,648 (+)NCBIHuRef
CHM1_13141,005,858 - 141,131,749 (+)NCBICHM1_1
T2T-CHM13v2.03144,071,778 - 144,197,435 (+)NCBIT2T-CHM13v2.0
Zbtb38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39996,564,820 - 96,613,728 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl996,564,823 - 96,634,884 (-)EnsemblGRCm39 Ensembl
GRCm38996,682,767 - 96,731,675 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl996,682,770 - 96,752,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv37996,585,842 - 96,632,094 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36996,495,619 - 96,541,027 (-)NCBIMGSCv36mm8
Celera996,241,020 - 96,287,268 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map950.71NCBI
Zbtb38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555084,260,716 - 4,297,435 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555084,260,716 - 4,297,435 (-)NCBIChiLan1.0ChiLan1.0
ZBTB38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22139,277,994 - 139,358,799 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13139,282,692 - 139,363,532 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03138,401,279 - 138,481,969 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13145,954,568 - 146,079,500 (+)NCBIpanpan1.1PanPan1.1panPan2
ZBTB38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12337,283,794 - 37,344,316 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2337,297,101 - 37,341,506 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2337,204,078 - 37,337,108 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02337,741,900 - 37,874,509 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2337,795,756 - 37,874,493 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12337,425,079 - 37,557,988 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02337,502,716 - 37,635,250 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02337,744,769 - 37,878,042 (+)NCBIUU_Cfam_GSD_1.0
Zbtb38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560276,467,370 - 76,523,590 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365403,198,254 - 3,262,475 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365403,207,044 - 3,263,373 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1382,064,565 - 82,195,319 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11382,053,887 - 82,195,321 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21389,895,533 - 90,036,843 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11549,160,877 - 49,203,378 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1549,160,896 - 49,164,486 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604122,065,957 - 22,224,470 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473017,952,620 - 18,075,245 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473017,952,625 - 18,075,245 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Zbtb38
1004 total Variants

Predicted Target Of
Summary Value
Count of predictions:233
Count of miRNA genes:173
Interacting mature miRNAs:191
Transcripts:ENSRNOT00000016625
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 40 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)862848139107848139Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)862848139107848139Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)862970527107970527Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)862848139107848139Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)862848139107848139Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)862848139107848139Rat

1 to 10 of 40 rows
AW530896  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2897,288,039 - 97,288,229 (+)MAPPERmRatBN7.2
Rnor_6.08104,593,021 - 104,593,210NCBIRnor6.0
Rnor_5.08104,039,563 - 104,039,752UniSTSRnor5.0
RGSC_v3.48101,786,122 - 101,786,311UniSTSRGSC3.4
Celera896,730,432 - 96,730,621UniSTS
RH 3.4 Map81052.3UniSTS
Cytogenetic Map8q31UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 30 of 39 rows
RefSeq Transcripts NM_001012471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 39 rows

Ensembl Acc Id: ENSRNOT00000016625   ⟹   ENSRNOP00000067350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,281,546 - 97,296,084 (-)Ensembl
Rnor_6.0 Ensembl8104,589,621 - 104,593,625 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097273   ⟹   ENSRNOP00000078634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,282,074 - 97,485,625 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097643   ⟹   ENSRNOP00000081438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,280,993 - 97,331,437 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100368   ⟹   ENSRNOP00000094159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,281,584 - 97,318,750 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102946   ⟹   ENSRNOP00000095257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,280,993 - 97,318,750 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103605   ⟹   ENSRNOP00000095446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,280,993 - 97,351,352 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107023   ⟹   ENSRNOP00000093204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,280,993 - 97,318,750 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111528   ⟹   ENSRNOP00000081285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,280,993 - 97,351,380 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115816   ⟹   ENSRNOP00000097975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,280,993 - 97,331,437 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119448   ⟹   ENSRNOP00000094938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,280,993 - 97,351,380 (-)Ensembl
RefSeq Acc Id: NM_001012471   ⟹   NP_001012489
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,164,161 - 106,168,062 (-)NCBI
mRatBN7.2897,284,617 - 97,288,518 (-)NCBI
Rnor_6.08104,589,598 - 104,593,499 (-)NCBI
Rnor_5.08104,013,746 - 104,141,365 (-)NCBI
RGSC_v3.48101,782,699 - 101,786,600 (-)RGD
Celera896,727,009 - 96,730,910 (-)RGD
Sequence:
RefSeq Acc Id: XM_063265575   ⟹   XP_063121645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,196,963 (-)NCBI
RefSeq Acc Id: XM_063265576   ⟹   XP_063121646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,195,502 (-)NCBI
RefSeq Acc Id: XM_063265577   ⟹   XP_063121647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,191,364 (-)NCBI
RefSeq Acc Id: XM_063265578   ⟹   XP_063121648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,230,891 (-)NCBI
RefSeq Acc Id: XM_063265579   ⟹   XP_063121649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,230,891 (-)NCBI
RefSeq Acc Id: XM_063265580   ⟹   XP_063121650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,175,641 (-)NCBI
RefSeq Acc Id: XM_063265581   ⟹   XP_063121651
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,230,891 (-)NCBI
RefSeq Acc Id: XM_063265582   ⟹   XP_063121652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,230,891 (-)NCBI
RefSeq Acc Id: XM_063265583   ⟹   XP_063121653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,196,487 (-)NCBI
RefSeq Acc Id: XM_063265584   ⟹   XP_063121654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,196,560 (-)NCBI
RefSeq Acc Id: XR_010053973
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,139,460 - 106,231,214 (-)NCBI
RefSeq Acc Id: XR_010053974
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,124,181 - 106,231,214 (-)NCBI
RefSeq Acc Id: XR_010053975
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,124,181 - 106,231,215 (-)NCBI
RefSeq Acc Id: XR_010053976
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,124,181 - 106,231,214 (-)NCBI
RefSeq Acc Id: XR_010053977
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,139,460 - 106,230,988 (-)NCBI
RefSeq Acc Id: XR_010053978
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,139,460 - 106,231,014 (-)NCBI
1 to 5 of 21 rows
1 to 5 of 21 rows
RefSeq Acc Id: NP_001012489   ⟸   NM_001012471
- UniProtKB: M0RCM7 (UniProtKB/TrEMBL),   A6I286 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000067350   ⟸   ENSRNOT00000016625
Ensembl Acc Id: ENSRNOP00000097975   ⟸   ENSRNOT00000115816
Ensembl Acc Id: ENSRNOP00000094938   ⟸   ENSRNOT00000119448
Ensembl Acc Id: ENSRNOP00000095257   ⟸   ENSRNOT00000102946
BTB   C2H2-type

Name Modeler Protein Id AA Range Protein Structure
AF-Q5EXX3-F1-model_v2 AlphaFold Q5EXX3 1-1203 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 43 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-29449 BioCyc
Ensembl Genes ENSRNOG00000012386 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016625 ENTREZGENE
  ENSRNOT00000016625.7 UniProtKB/TrEMBL
  ENSRNOT00000097273.1 UniProtKB/TrEMBL
  ENSRNOT00000097643.1 UniProtKB/TrEMBL
  ENSRNOT00000100368.1 UniProtKB/TrEMBL
  ENSRNOT00000102946 ENTREZGENE
  ENSRNOT00000102946.1 UniProtKB/TrEMBL
  ENSRNOT00000103605.1 UniProtKB/TrEMBL
  ENSRNOT00000107023.1 UniProtKB/TrEMBL
  ENSRNOT00000111528 ENTREZGENE
  ENSRNOT00000111528.1 UniProtKB/TrEMBL
  ENSRNOT00000115816.1 UniProtKB/TrEMBL
  ENSRNOT00000119448.1 UniProtKB/TrEMBL
  ENSRNOT00000120592 ENTREZGENE
  ENSRNOT00000121360 ENTREZGENE
  ENSRNOT00000154527 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:315936 UniProtKB/Swiss-Prot
NCBI Gene 315936 ENTREZGENE
PANTHER ZINC FINGER AND BTB DOMAIN CONTAINING 33 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zbtb38 PhenoGen
PROSITE BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012386 RatGTEx
SMART BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
1 to 40 of 43 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Zbtb38  zinc finger and BTB domain containing 38  RGD1310136  similar to kaiso protein; zinc finger transcription factor Kaiso  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1310136  similar to kaiso protein; zinc finger transcription factor Kaiso  RGD1310136_predicted  similar to kaiso protein; zinc finger transcription factor Kaiso (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310136_predicted  similar to kaiso protein; zinc finger transcription factor Kaiso (predicted)  LOC315936_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315936_predicted  similar to kaiso protein; zinc finger transcription factor Kaiso (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL