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Gene: Ccni (cyclin I) Rattus norvegicus

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Symbol:

Ccni

Name:

cyclin I

RGD ID:

1309209

Description:

Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in G1/S transition of mitotic cell cycle. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CCNI (cyclin I); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cyclin-I; LOC289500

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCNI (cyclin I)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ccni (cyclin I)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccni (cyclin I)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCNI (cyclin I)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCNI (cyclin I)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccni (cyclin I)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCNI (cyclin I)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCNI (cyclin I)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccni (cyclin I)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SEPTIN11 (septin 11)	HGNC	OrthoDB
Homo sapiens (human):	RCSD1 (RCSD domain containing 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CCNI (cyclin I)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ccni (cyclin I)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccni (cyclin I)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	R02F2.1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	ccni	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	15,164,047 - 15,186,885 (+)	NCBI		GRCr8
mRatBN7.2	14	14,879,698 - 14,902,510 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	14,879,717 - 14,902,510 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	14,888,988 - 14,911,658 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	16,208,004 - 16,230,674 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	14,903,257 - 14,925,929 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	16,341,510 - 16,364,326 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	16,341,536 - 16,364,326 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	16,267,506 - 16,290,318 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	16,437,340 - 16,460,130 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	16,437,274 - 16,460,127 (+)	NCBI
Celera	14	14,282,201 - 14,304,991 (+)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccni	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Ccni (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of CCNI mRNA	CTD	PMID:36331819
Ccni	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Ccni (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of CCNI mRNA	CTD	PMID:22206623
Ccni	Rat	17beta-estradiol	affects expression	ISO	Ccni (Mus musculus)	6480464	Estradiol affects the expression of CCNI mRNA	CTD	PMID:15598610
Ccni	Rat	17beta-estradiol	increases expression	ISO	Ccni (Mus musculus)	6480464	Estradiol results in increased expression of CCNI mRNA	CTD	PMID:39298647
Ccni	Rat	17beta-estradiol	affects expression	ISO	CCNI (Homo sapiens)	6480464	Estradiol affects the expression of CCNI mRNA	CTD	PMID:21826169
Ccni	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Ccni (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of CCNI mRNA	CTD	PMID:18796159 and PMID:19770486
Ccni	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	CCNI (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of CCNI mRNA more ...	CTD	PMID:28628672
Ccni	Rat	4,4'-sulfonyldiphenol	multiple interactions	ISO	CCNI (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of CCNI mRNA	CTD	PMID:28628672
Ccni	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Ccni (Mus musculus)	6480464	bisphenol S results in increased expression of CCNI mRNA	CTD	PMID:39298647
Ccni	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of CCNI mRNA	CTD	PMID:30047161
Ccni	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of CCNI mRNA	CTD	PMID:36843608
Ccni	Rat	acrolein	multiple interactions	ISO	CCNI (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of CCNI mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of CCNI mRNA	CTD	PMID:32699268
Ccni	Rat	aflatoxin B1	decreases methylation	ISO	CCNI (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of CCNI gene	CTD	PMID:27153756
Ccni	Rat	alpha-pinene	multiple interactions	ISO	CCNI (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of CCNI mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of CCNI mRNA	CTD	PMID:32699268
Ccni	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of CCNI mRNA	CTD	PMID:30047161
Ccni	Rat	antirheumatic drug	increases expression	ISO	CCNI (Homo sapiens)	6480464	Antirheumatic Agents results in increased expression of CCNI mRNA	CTD	PMID:24449571
Ccni	Rat	Aroclor 1254	decreases expression	ISO	Ccni (Mus musculus)	6480464	Chlorodiphenyl (54% Chlorine) results in decreased expression of CCNI mRNA	CTD	PMID:23650126
Ccni	Rat	benzo[a]pyrene diol epoxide I	decreases expression	ISO	CCNI (Homo sapiens)	6480464	7 more ...	CTD	PMID:20018196
Ccni	Rat	benzo[a]pyrene diol epoxide I	affects expression	ISO	CCNI (Homo sapiens)	6480464	7 more ...	CTD	PMID:20382639
Ccni	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	Ccni (Mus musculus)	6480464	Diethylhexyl Phthalate results in decreased expression of CCNI mRNA	CTD	PMID:33754040
Ccni	Rat	bisphenol A	affects expression	ISO	CCNI (Homo sapiens)	6480464	bisphenol A affects the expression of CCNI mRNA	CTD	PMID:21826169
Ccni	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of CCNI mRNA	CTD	PMID:33296240
Ccni	Rat	bisphenol A	increases expression	ISO	CCNI (Homo sapiens)	6480464	bisphenol A results in increased expression of CCNI mRNA and bisphenol A results in increased expression of CCNI protein	CTD	PMID:29275510 and PMID:33376534
Ccni	Rat	bisphenol A	multiple interactions	ISO	CCNI (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of CCNI mRNA	CTD	PMID:28628672
Ccni	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of CCNI mRNA	CTD	PMID:30816183
Ccni	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of CCNI mRNA	CTD	PMID:25181051
Ccni	Rat	bisphenol F	multiple interactions	ISO	CCNI (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of CCNI mRNA	CTD	PMID:28628672
Ccni	Rat	carbon nanotube	increases expression	ISO	CCNI (Homo sapiens)	6480464	Nanotubes and Carbon results in increased expression of CCNI mRNA	CTD	PMID:15585362
Ccni	Rat	carbon nanotube	decreases expression	ISO	Ccni (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681
Ccni	Rat	chloropicrin	affects expression	ISO	CCNI (Homo sapiens)	6480464	chloropicrin affects the expression of CCNI mRNA	CTD	PMID:26352163
Ccni	Rat	clofibrate	increases expression	ISO	Ccni (Mus musculus)	6480464	Clofibrate results in increased expression of CCNI mRNA	CTD	PMID:17585979
Ccni	Rat	clofibrate	multiple interactions	ISO	Ccni (Mus musculus)	6480464	[Clofibrate co-treated with Acetaminophen] affects the expression of CCNI mRNA and PPARA affects the reaction [[Clofibrate co-treated with Acetaminophen] affects the expression of CCNI mRNA]	CTD	PMID:17585979
Ccni	Rat	cobalt dichloride	decreases expression	ISO	CCNI (Homo sapiens)	6480464	cobaltous chloride results in decreased expression of CCNI mRNA	CTD	PMID:19320972
Ccni	Rat	cobalt dichloride	increases expression	ISO	CCNI (Homo sapiens)	6480464	cobaltous chloride results in increased expression of CCNI mRNA	CTD	PMID:19376846
Ccni	Rat	coumestrol	decreases expression	ISO	CCNI (Homo sapiens)	6480464	Coumestrol results in decreased expression of CCNI mRNA	CTD	PMID:19167446
Ccni	Rat	Cuprizon	decreases expression	EXP		6480464	Cuprizone results in decreased expression of CCNI mRNA	CTD	PMID:26577399
Ccni	Rat	cyclosporin A	increases expression	ISO	CCNI (Homo sapiens)	6480464	Cyclosporine results in increased expression of CCNI mRNA	CTD	PMID:20106945 and PMID:27989131
Ccni	Rat	dexamethasone	multiple interactions	ISO	CCNI (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of CCNI mRNA more ...	CTD	PMID:28628672
Ccni	Rat	Di-n-octyl phthalate	decreases expression	ISO	Ccni (Mus musculus)	6480464	di-n-octyl phthalate results in decreased expression of CCNI mRNA	CTD	PMID:37810885
Ccni	Rat	diazinon	affects expression	EXP		6480464	Diazinon affects the expression of CCNI mRNA	CTD	PMID:22546817
Ccni	Rat	dioxygen	increases expression	ISO	Ccni (Mus musculus)	6480464	Oxygen deficiency results in increased expression of CCNI mRNA	CTD	PMID:22629407
Ccni	Rat	dioxygen	multiple interactions	ISO	Ccni (Mus musculus)	6480464	[NFE2L2 protein affects the susceptibility to Oxygen] which affects the expression of CCNI mRNA and Oxygen inhibits the reaction [Oxygen deficiency results in increased expression of CCNI mRNA]	CTD	PMID:22629407 and PMID:30529165
Ccni	Rat	diuron	decreases expression	EXP		6480464	Diuron results in decreased expression of CCNI mRNA	CTD	PMID:21551480
Ccni	Rat	dorsomorphin	multiple interactions	ISO	CCNI (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of CCNI mRNA	CTD	PMID:27188386
Ccni	Rat	doxorubicin	decreases expression	ISO	CCNI (Homo sapiens)	6480464	Doxorubicin results in decreased expression of CCNI mRNA	CTD	PMID:29803840
Ccni	Rat	endosulfan	decreases expression	EXP		6480464	Endosulfan results in decreased expression of CCNI mRNA	CTD	PMID:29391264
Ccni	Rat	flutamide	decreases expression	EXP		6480464	Flutamide results in decreased expression of CCNI mRNA	CTD	PMID:24136188
Ccni	Rat	folic acid	decreases expression	ISO	Ccni (Mus musculus)	6480464	Folic Acid results in decreased expression of CCNI mRNA	CTD	PMID:25629700
Ccni	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of CCNI mRNA	CTD	PMID:22061828 and PMID:33387578
Ccni	Rat	glafenine	decreases expression	EXP		6480464	Glafenine results in decreased expression of CCNI mRNA	CTD	PMID:24136188
Ccni	Rat	indometacin	multiple interactions	ISO	CCNI (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of CCNI mRNA more ...	CTD	PMID:28628672
Ccni	Rat	menadione	affects expression	ISO	CCNI (Homo sapiens)	6480464	Vitamin K 3 affects the expression of CCNI mRNA	CTD	PMID:20044591
Ccni	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of CCNI mRNA	CTD	PMID:30047161
Ccni	Rat	ozone	multiple interactions	ISO	CCNI (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of CCNI mRNA more ...	CTD	PMID:32699268
Ccni	Rat	paracetamol	decreases expression	ISO	Ccni (Mus musculus)	6480464	Acetaminophen results in decreased expression of CCNI mRNA	CTD	PMID:17585979
Ccni	Rat	paracetamol	increases expression	ISO	CCNI (Homo sapiens)	6480464	Acetaminophen results in increased expression of CCNI mRNA	CTD	PMID:29067470
Ccni	Rat	paracetamol	multiple interactions	ISO	Ccni (Mus musculus)	6480464	[Clofibrate co-treated with Acetaminophen] affects the expression of CCNI mRNA and PPARA affects the reaction [[Clofibrate co-treated with Acetaminophen] affects the expression of CCNI mRNA]	CTD	PMID:17585979
Ccni	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Ccni (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of CCNI mRNA	CTD	PMID:36331819
Ccni	Rat	phenobarbital	affects expression	ISO	Ccni (Mus musculus)	6480464	Phenobarbital affects the expression of CCNI mRNA	CTD	PMID:23091169
Ccni	Rat	potassium dichromate	decreases expression	ISO	Ccni (Mus musculus)	6480464	Potassium Dichromate results in decreased expression of CCNI mRNA	CTD	PMID:23608068
Ccni	Rat	progesterone	affects expression	ISO	Ccni (Mus musculus)	6480464	Progesterone affects the expression of CCNI mRNA	CTD	PMID:17251523
Ccni	Rat	SB 431542	multiple interactions	ISO	CCNI (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of CCNI mRNA	CTD	PMID:27188386
Ccni	Rat	sirolimus	multiple interactions	ISO	Ccni (Mus musculus)	6480464	Sirolimus inhibits the reaction [IL2 protein results in decreased expression of CCNI mRNA]	CTD	PMID:11355896
Ccni	Rat	sodium arsenite	increases expression	ISO	CCNI (Homo sapiens)	6480464	sodium arsenite results in increased expression of CCNI mRNA	CTD	PMID:38568856
Ccni	Rat	sodium arsenite	decreases expression	ISO	CCNI (Homo sapiens)	6480464	sodium arsenite results in decreased expression of CCNI mRNA	CTD	PMID:34032870
Ccni	Rat	sodium fluoride	increases expression	ISO	Ccni (Mus musculus)	6480464	Sodium Fluoride results in increased expression of CCNI mRNA	CTD	PMID:21340527
Ccni	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of CCNI mRNA	CTD	PMID:30047161
Ccni	Rat	sunitinib	increases expression	ISO	CCNI (Homo sapiens)	6480464	Sunitinib results in increased expression of CCNI mRNA	CTD	PMID:31533062
Ccni	Rat	titanium dioxide	increases expression	ISO	Ccni (Mus musculus)	6480464	titanium dioxide results in increased expression of CCNI mRNA	CTD	PMID:23557971 and PMID:29264374
Ccni	Rat	titanium dioxide	decreases expression	ISO	Ccni (Mus musculus)	6480464	titanium dioxide results in decreased expression of CCNI mRNA	CTD	PMID:27760801
Ccni	Rat	trichloroethene	decreases expression	ISO	Ccni (Mus musculus)	6480464	Trichloroethylene results in decreased expression of CCNI mRNA	CTD	PMID:19448997
Ccni	Rat	triphenyl phosphate	affects expression	ISO	CCNI (Homo sapiens)	6480464	triphenyl phosphate affects the expression of CCNI mRNA	CTD	PMID:37042841
Ccni	Rat	triptonide	increases expression	ISO	Ccni (Mus musculus)	6480464	triptonide results in increased expression of CCNI mRNA	CTD	PMID:33045310
Ccni	Rat	valproic acid	affects expression	ISO	CCNI (Homo sapiens)	6480464	Valproic Acid affects the expression of CCNI mRNA	CTD	PMID:25979313
Ccni	Rat	valproic acid	decreases methylation	ISO	CCNI (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of CCNI gene	CTD	PMID:29154799
Ccni	Rat	valproic acid	decreases expression	ISO	CCNI (Homo sapiens)	6480464	Valproic Acid results in decreased expression of CCNI mRNA	CTD	PMID:23179753 and PMID:26272509
Ccni	Rat	valproic acid	multiple interactions	ISO	CCNI (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of CCNI mRNA	CTD	PMID:27188386
Ccni	Rat	vorinostat	decreases expression	ISO	CCNI (Homo sapiens)	6480464	vorinostat results in decreased expression of CCNI mRNA	CTD	PMID:27188386

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccni	Rat	G1/S transition of mitotic cell cycle	involved_in	IBA	CGD:CAL0000185532 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccni	Rat	cyclin-dependent protein kinase holoenzyme complex	part_of	IBA	MGI:108042 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ccni	Rat	cytoplasm	is_active_in	IBA	FB:FBgn0000404 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ccni	Rat	nucleus	is_active_in	IBA	FB:FBgn0000404 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccni	Rat	cyclin-dependent protein serine/threonine kinase regulator activity	enables	IBA	CGD:CAL0000175354 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ccni	Rat	protein binding	enables	ISO	CCNI (Homo sapiens)	1624291	UniProtKB:Q00526 more ...	RGD	PMID:25852190 more ...

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Ccni
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	15,164,047 - 15,186,885 (+)	NCBI		GRCr8
mRatBN7.2	14	14,879,698 - 14,902,510 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	14,879,717 - 14,902,510 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	14,888,988 - 14,911,658 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	16,208,004 - 16,230,674 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	14,903,257 - 14,925,929 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	16,341,510 - 16,364,326 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	16,341,536 - 16,364,326 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	16,267,506 - 16,290,318 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	16,437,340 - 16,460,130 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	16,437,274 - 16,460,127 (+)	NCBI
Celera	14	14,282,201 - 14,304,991 (+)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

CCNI
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	77,047,155 - 77,075,989 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	77,047,155 - 77,076,309 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	77,968,308 - 77,997,142 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	78,188,189 - 78,216,149 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	78,326,353 - 78,354,304	NCBI
Celera	4	75,270,553 - 75,298,504 (-)	NCBI		Celera
Cytogenetic Map	4	q21.1	NCBI
HuRef	4	73,720,994 - 73,748,951 (-)	NCBI		HuRef
CHM1_1	4	77,946,423 - 77,974,382 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	80,387,967 - 80,416,780 (-)	NCBI		T2T-CHM13v2.0

Ccni
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	93,329,796 - 93,354,348 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	93,329,792 - 93,354,354 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	93,181,933 - 93,206,495 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	93,181,933 - 93,206,495 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	93,610,959 - 93,635,521 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	94,257,141 - 94,281,232 (-)	NCBI		MGSCv36	mm8
Celera	5	91,335,519 - 91,360,075 (-)	NCBI		Celera
Cytogenetic Map	5	E2	NCBI
cM Map	5	47.29	NCBI

Ccni
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	1,698,568 - 1,735,196 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955433	1,698,568 - 1,735,196 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCNI
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	52,986,685 - 53,022,812 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	53,182,420 - 53,215,473 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	47,129,542 - 47,158,419 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	52,968,082 - 52,996,932 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	52,968,082 - 52,996,932 (+)	Ensembl	panpan1.1		panPan2

CCNI
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	1,612,590 - 1,650,661 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	1,608,330 - 1,645,352 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	40,236,220 - 40,274,002 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	1,642,080 - 1,680,282 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	1,637,827 - 1,680,282 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	1,634,137 - 1,672,319 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	1,589,677 - 1,627,852 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	38,547,915 - 38,585,702 (+)	NCBI		UU_Cfam_GSD_1.0

Ccni
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	10,538,770 - 10,559,788 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936676	947,455 - 968,479 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCNI
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	72,686,106 - 72,719,065 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	72,686,095 - 72,719,307 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	76,887,178 - 76,919,644 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCNI
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	25,547,692 - 25,576,412 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	3,901,103 - 3,931,303 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccni
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624757	13,887,997 - 13,927,712 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ccni
56 total Variants

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
14	16459060	16459061	C	G	snv	SS/JrHsdMcwi (MCW)	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	227
Count of miRNA genes:	157
Interacting mature miRNAs:	187
Transcripts:	ENSRNOT00000002924
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300114	Srn2	Serum renin concentration QTL 2	3.27		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	3813074	21217635	Rat
2293089	Iddm31	Insulin dependent diabetes mellitus QTL 31	4.7		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	14	3813074	18274691	Rat
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	9088978	39057237	Rat
631212	Bw5	Body weight QTL5	5.43		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	14	11030812	30320092	Rat
2302277	Gluco38	Glucose level QTL 38	5.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	28035204	Rat
1331740	Bw26	Body weight QTL 26	3.028		body mass (VT:0001259)	body weight (CMO:0000012)	14	3813074	30767156	Rat
619619	Rf4	Renal disease susceptibility QTL 4	4.1	0.002	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	14	1	32754612	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8267090	53267090	Rat
70195	Mcs8	Mammary carcinoma susceptibility QTL 8	4.28		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	14	3813074	24531477	Rat
2300183	Bmd60	Bone mineral density QTL 60	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	14	1	26541967	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41131407	Rat
2300159	Bmd61	Bone mineral density QTL 61	5.3	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	14	1	26541967	Rat
70204	Niddm20	Non-insulin dependent diabetes mellitus QTL 20	5.1	0.000008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	1217606	16960180	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8267090	53267090	Rat
1300140	Srn3	Serum renin concentration QTL 3	3.19		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	14875168	30883947	Rat

BF399292

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	14,899,828 - 14,900,020 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	16,361,645 - 16,361,836	NCBI	Rnor6.0
Rnor_5.0	14	16,287,637 - 16,287,828	UniSTS	Rnor5.0
RGSC_v3.4	14	16,457,449 - 16,457,640	UniSTS	RGSC3.4
Celera	14	14,302,310 - 14,302,501	UniSTS
RH 3.4 Map	14	173.2	UniSTS
Cytogenetic Map	14	p22	UniSTS

RH142357

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	14,902,014 - 14,902,213 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	16,363,831 - 16,364,029	NCBI	Rnor6.0
Rnor_5.0	14	16,289,823 - 16,290,021	UniSTS	Rnor5.0
RGSC_v3.4	14	16,459,635 - 16,459,833	UniSTS	RGSC3.4
Celera	14	14,304,496 - 14,304,694	UniSTS
RH 3.4 Map	14	175.9	UniSTS
Cytogenetic Map	14	p22	UniSTS

AW534411

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	14,885,906 - 14,886,056 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	16,347,726 - 16,347,875	NCBI	Rnor6.0
Rnor_5.0	14	16,273,718 - 16,273,867	UniSTS	Rnor5.0
RGSC_v3.4	14	16,443,530 - 16,443,679	UniSTS	RGSC3.4
Celera	14	14,288,391 - 14,288,540	UniSTS
RH 3.4 Map	14	172.5	UniSTS
Cytogenetic Map	14	p22	UniSTS

RH137017

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	14,902,299 - 14,902,484 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	16,364,116 - 16,364,300	NCBI	Rnor6.0
Rnor_5.0	14	16,290,108 - 16,290,292	UniSTS	Rnor5.0
RGSC_v3.4	14	16,459,920 - 16,460,104	UniSTS	RGSC3.4
Celera	14	14,304,781 - 14,304,965	UniSTS
RH 3.4 Map	14	174.8	UniSTS
Cytogenetic Map	14	p22	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001105998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002924 ⟹ ENSRNOP00000002924

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	14,879,717 - 14,902,510 (+)	Ensembl
Rnor_6.0 Ensembl	14	16,341,536 - 16,364,326 (+)	Ensembl

RefSeq Acc Id:

NM_001105998 ⟹ NP_001099468

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	15,164,095 - 15,186,885 (+)	NCBI
mRatBN7.2	14	14,879,717 - 14,902,510 (+)	NCBI
Rnor_6.0	14	16,341,536 - 16,364,326 (+)	NCBI
Rnor_5.0	14	16,267,506 - 16,290,318 (+)	NCBI
RGSC_v3.4	14	16,437,340 - 16,460,130 (+)	RGD
Celera	14	14,282,201 - 14,304,991 (+)	RGD

Sequence:

show sequence

CCCGCGAGCGGACGCGCTAGCGCCTCTGTCTCGCTTTTTCTTATTTTCTCCCCCTTCCCCCTTCCTTTTCTTTTCTTTTTTCCCCTTCCCCCCTTTCACCATTTCCCCTCGGAGGCGGCGCCCCCTCC
TCACCCGGGCACCAGCGGCAGCGGTCGGAGGAGCGGGACCGGCGGCGGCGGCCTCCGGCCCAGGGTCATCATGGAATTAGTTCGCTGAGTGACCCTTCGGCCGCAGCCGTGCGTCCCGCCCGAGTGCC
CGCGCCCGCCGGCCCGGTTTGCCCTCTTCTCCCTCCTCAGTCGGCCCGGCCCTAGTCCCGCGCGCCCCGCCGCCGCGCGCTGAGGATCATGAGGTGGTAACGGGCCCCCGGATGACCCCGCGTCACCA
CTGTGAGGCCTACAGCTCTGCCGGGGAGGAGGAGGAGGAGGAAGAGGAGGAGAAGGTAGCTACATCAAGCTGGGTGGCAGGCAGATCCAAAGGGATATCATGAAGTTTCCAGGACCTTTGGAAAACCA
GAGACTGTCTTCCCTGTTGGAAAGGGCAATCTCCAGGGAAGCCCAGATGTGGAAGGTGAATGTACCAAAAATACCTACAAACCAGAATGTTTCTCCATCCCAGAGAGACGAAGTAATTCAGTGGTTGG
CCAAACTCAAATACCAGTTCAACCTTTATCCAGAAACATTTGCTCTGGCAAGCAGTCTTTTGGATAGGTTTTTAGCTACAGTAAAAGCTCATCCAAAATATTTGAATTGTATTGCAATCAGCTGTTTT
TTTCTGGCTGCTAAGACTGTTGAAGAAGATGAGAAAATTCCAGTGCTAAAGGTATTGGCAAGAGACAGTTTCTGTGGATGTTCCTCATCTGAGATTTTGAGAATGGAGAGAATTATTCTGGATAAATT
GAATTGGGATCTTCACACAGCCACACCATTGGATTTTCTTCACATTTTCCATGCCATTGCAGTGTCAACTAGGCCTCAGTTACTTTTCAGTTTGCCCAGATTGAGCCCGTCTCAACACTTGGCAGTCC
TGACTAAGCAGCTACTTCACTGTATGGCCTGCAACCAACTTCTGCAGTTCAAAGGATCCATGCTTGCTCTGGCCATGGTTAGTCTGGAAATGGAGAAACTCATTCCCGATTGGCTTCCTCTTACAATT
GAACTGCTTCAGAAAGCACAGATGGACAGCTCCCAGTTGATCCACTGTCGGGAGCTGGTGGCATATCACCTTTCTGCTCTGCAGTCTTCCCTGCCTCTAAATTCCGTTTATGTCTACCGTCCCCTCAA
GCACACCCTGGTGACCTGTGACAAAGGAGCGTTCAAATTACATCCCTCCTCTATCTCAGGCCCAGATTTCTCCAAGGACAACAGCAAGCCAGAAGTGCCAGTCAGAGGTCCAGCAGCCTTCCACCTCC
ATCTCCCTGCTGTCAGTGGGTGCAAGCATACCTCTGCTAAACGGAAAGTGGAGGAGATGGAGGTGGACGACTTGTATGACGGGATCAAGCGGCTCTATAACGAAGACAGTGGTTCCGAGAATGTGGGC
TCTGTGTGTGGCACTGATTTATCCAGACAAGAGGGCCATGCTTCCCCCTGTCCACCTTTGCAGCCTGTTTCTGTCATGTAGTTTCAGGTGTCACCTTCCAGTGCACACTAAGGCTGACTACTTGGGGT
GAGACTAGAAAACCAGGAAAGGCTATAGAGAAGGGCATGTGCTTTATCAGACTGAAGTGAGCCAGGAAAAAAGAAAAACACTTATTCTTTTGTGCAATTACTTACAATTCAACATAATTTAATATAAA
GGCATATATTTATAAACTCAAGATCCAAAATATATTTAAAAGTAAAGCAAAAGTTCTTTGTACTATGTCAGTTCCACTTCTTTGTTAAAATAAGTTTGCCCATGTCCAAAAAAAATTTTTAAAAAGTA
AATGTTTAGGGGAAAGTTGCAAACTCACAGCTAGGAACCTTGTTCATGTTGACCTCTTCCTCTTGCCTTTTCTTGCCTCGGTTGAATACTTCATAAGTTGTGTGCTTGTTGATTTGTGTATTCTGACT
TCACTGAACAAGTAACACCCACCTTTTCTTTTAAAGTAATTCAGGAGGCAAATTATTTTTTGTGGCAGCCATGTTTAATCCACGGTTCAAGTGTGTTAGTCTGAAAAGGGCACTTTGAAGCTATCCCC
ATGAATCAGTGGCAGTAGGAAAAGTTCTCTTATTTTGTCAGTCTTATTTTAGTTTTTAGTTTAAAAAGATTACTATTGTCCTTTTTTGTTTATCTTGAAGCTTAAAAATGGCATGTAATTAGGACATC
TTAAGCATTTTGACGTTTATATAAAAGAATTTCTGATAAAGTTAATATATCCAGGTGCTCACCAAAGAAACATGTATGTAACATATAAGTAGATTTTTGTAACTGATCTGTTTTCACTCATTTATAAT
CAGTAGAAGCAACTGTCTAGATATTGGGGCAGCCCTGATTGGAGTCTAACTTATAATTGAATTCAGTACCCTAGTTTTATATTGCGCTATTAGGATTTTCTTTATAAGGAATTTTTCCCTTGTTTTTC
TCTGATTGGCTTCTGGACCCTGAGCTCCCTTTGCAGTCTGAAGATGGCACTGCAGTCAGAACCGTGTACTGCTGGGAAAGCCTCTGGTAGCAATAAAATGTTGTCCTTAAC

hide sequence

RefSeq Acc Id:

XM_006250715 ⟹ XP_006250777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	15,164,047 - 15,186,884 (+)	NCBI
mRatBN7.2	14	14,879,698 - 14,902,509 (+)	NCBI
Rnor_6.0	14	16,341,510 - 16,364,325 (+)	NCBI
Rnor_5.0	14	16,267,506 - 16,290,318 (+)	NCBI

Sequence:

show sequence

GCTCGCCCCTCCCTCCCCAGCCTTCCCCCGCGAGCGGACGCGCTAGCGCCTCTGTCTCGCTTTTTCTTATTTTCTCCCCCTTCCCCCTTCCTTTTCTTTTCTTTTTTCCCCTTCCCCCCTTTCACCAT
TTCCCCTCGGAGGCGCTTCCCTCGGGCAGGGGCAGAGCCGGCCTCACCCCGCGCCTCTCCCCGGCCCCCGCCGCCCTATGGCGAGAGGGCGCCCCCTCCTCACCCGGGCACCAGCGGCAGCGGTCGGA
GGAGCGGGACCGGCGGCGGCGGCCTCCGGCCCAGGGTCATCATGGAATTAGTTCGCTGAGTGACCCTTCGGCCGCAGCCGTGCGTCCCGCCCGAGTGCCCGCGCCCGCCGGCCCGGTTTGCCCTCTTC
TCCCTCCTCAGTCGGCCCGGCCCTAGTCCCGCGCGCCCCGCCGCCGCGCGCTGAGGATCATGAGGTGGTAACGGGCCCCCGGATGACCCCGCGTCACCACTGTGAGGCCTACAGCTCTGCCGGGGAGG
AGGAGGAGGAGGAAGAGGAGGAGAAGGTAGCTACATCAAGCTGGGTGGCAGGCAGATCCAAAGGGATATCATGAAGTTTCCAGGACCTTTGGAAAACCAGAGACTGTCTTCCCTGTTGGAAAGGGCAA
TCTCCAGGGAAGCCCAGATGTGGAAGGTGAATGTACCAAAAATACCTACAAACCAGAATGTTTCTCCATCCCAGAGAGACGAAGTAATTCAGTGGTTGGCCAAACTCAAATACCAGTTCAACCTTTAT
CCAGAAACATTTGCTCTGGCAAGCAGTCTTTTGGATAGGTTTTTAGCTACAGTAAAAGCTCATCCAAAATATTTGAATTGTATTGCAATCAGCTGTTTTTTTCTGGCTGCTAAGACTGTTGAAGAAGA
TGAGAAAATTCCAGTGCTAAAGGTATTGGCAAGAGACAGTTTCTGTGGATGTTCCTCATCTGAGATTTTGAGAATGGAGAGAATTATTCTGGATAAATTGAATTGGGATCTTCACACAGCCACACCAT
TGGATTTTCTTCACATTTTCCATGCCATTGCAGTGTCAACTAGGCCTCAGTTACTTTTCAGTTTGCCCAGATTGAGCCCGTCTCAACACTTGGCAGTCCTGACTAAGCAGCTACTTCACTGTATGGCC
TGCAACCAACTTCTGCAGTTCAAAGGATCCATGCTTGCTCTGGCCATGGTTAGTCTGGAAATGGAGAAACTCATTCCCGATTGGCTTCCTCTTACAATTGAACTGCTTCAGAAAGCACAGATGGACAG
CTCCCAGTTGATCCACTGTCGGGAGCTGGTGGCATATCACCTTTCTGCTCTGCAGTCTTCCCTGCCTCTAAATTCCGTTTATGTCTACCGTCCCCTCAAGCACACCCTGGTGACCTGTGACAAAGGAG
CGTTCAAATTACATCCCTCCTCTATCTCAGGCCCAGATTTCTCCAAGGACAACAGCAAGCCAGAAGTGCCAGTCAGAGGTCCAGCAGCCTTCCACCTCCATCTCCCTGCTGTCAGTGGGTGCAAGCAT
ACCTCTGCTAAACGGAAAGTGGAGGAGATGGAGGTGGACGACTTGTATGACGGGATCAAGCGGCTCTATAACGAAGACAGTGGTTCCGAGAATGTGGGCTCTGTGTGTGGCACTGATTTATCCAGACA
AGAGGGCCATGCTTCCCCCTGTCCACCTTTGCAGCCTGTTTCTGTCATGTAGTTTCAGGTGTCACCTTCCAGTGCACACTAAGGCTGACTACTTGGGGTGAGACTAGAAAACCAGGAAAGGCTATAGA
GAAGGGCATGTGCTTTATCAGACTGAAGTGAGCCAGGAAAAAAGAAAAACACTTATTCTTTTGTGCAATTACTTACAATTCAACATAATTTAATATAAAGGCATATATTTATAAACTCAAGATCCAAA
ATATATTTAAAAGTAAAGCAAAAGTTCTTTGTACTATGTCAGTTCCACTTCTTTGTTAAAATAAGTTTGCCCATGTCCAAAAAAAATTTTTAAAAAGTAAATGTTTAGGGGAAAGTTGCAAACTCACA
GCTAGGAACCTTGTTCATGTTGACCTCTTCCTCTTGCCTTTTCTTGCCTCGGTTGAATACTTCATAAGTTGTGTGCTTGTTGATTTGTGTATTCTGACTTCACTGAACAAGTAACACCCACCTTTTCT
TTTAAAGTAATTCAGGAGGCAAATTATTTTTTGTGGCAGCCATGTTTAATCCACGGTTCAAGTGTGTTAGTCTGAAAAGGGCACTTTGAAGCTATCCCCATGAATCAGTGGCAGTAGGAAAAGTTCTC
TTATTTTGTCAGTCTTATTTTAGTTTTTAGTTTAAAAAGATTACTATTGTCCTTTTTTGTTTATCTTGAAGCTTAAAAATGGCATGTAATTAGGACATCTTAAGCATTTTGACGTTTATATAAAAGAA
TTTCTGATAAAGTTAATATATCCAGGTGCTCACCAAAGAAACATGTATGTAACATATAAGTAGATTTTTGTAACTGATCTGTTTTCACTCATTTATAATCAGTAGAAGCAACTGTCTAGATATTGGGG
CAGCCCTGATTGGAGTCTAACTTATAATTGAATTCAGTACCCTAGTTTTATATTGCGCTATTAGGATTTTCTTTATAAGGAATTTTTCCCTTGTTTTTCTCTGATTGGCTTCTGGACCCTGAGCTCCC
TTTGCAGTCTGAAGATGGCACTGCAGTCAGAACCGTGTACTGCTGGGAAAGCCTCTGGTAGCAATAAAATGTTGTCCTTAA

hide sequence

RefSeq Acc Id:

XM_063272900 ⟹ XP_063128970

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	15,164,047 - 15,186,884 (+)	NCBI


Protein RefSeqs	NP_001099468	(Get FASTA)	NCBI Sequence Viewer
	XP_006250777	(Get FASTA)	NCBI Sequence Viewer
	XP_063128970	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL88658	(Get FASTA)	NCBI Sequence Viewer
	EDL88659	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002924
	ENSRNOP00000002924.5
	ENSRNOP00000105637

RefSeq Acc Id:

NP_001099468 ⟸ NM_001105998

- UniProtKB:

D4A5E4 (UniProtKB/TrEMBL), A6KK51 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKFPGPLENQRLSSLLERAISREAQMWKVNVPKIPTNQNVSPSQRDEVIQWLAKLKYQFNLYPETFALASSLLDRFLATVKAHPKYLNCIAISCFFLAAKTVEEDEKIPVLKVLARDSFCGCSSSEIL
RMERIILDKLNWDLHTATPLDFLHIFHAIAVSTRPQLLFSLPRLSPSQHLAVLTKQLLHCMACNQLLQFKGSMLALAMVSLEMEKLIPDWLPLTIELLQKAQMDSSQLIHCRELVAYHLSALQSSLPL
NSVYVYRPLKHTLVTCDKGAFKLHPSSISGPDFSKDNSKPEVPVRGPAAFHLHLPAVSGCKHTSAKRKVEEMEVDDLYDGIKRLYNEDSGSENVGSVCGTDLSRQEGHASPCPPLQPVSVM

hide sequence

RefSeq Acc Id:	XP_006250777 ⟸ XM_006250715
- Peptide Label:	isoform X1
- UniProtKB:	D4A5E4 (UniProtKB/TrEMBL), A6KK51 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKFPGPLENQRLSSLLERAISREAQMWKVNVPKIPTNQNVSPSQRDEVIQWLAKLKYQFNLYPETFALASSLLDRFLATVKAHPKYLNCIAISCFFLAAKTVEEDEKIPVLKVLARDSFCGCSSSEIL RMERIILDKLNWDLHTATPLDFLHIFHAIAVSTRPQLLFSLPRLSPSQHLAVLTKQLLHCMACNQLLQFKGSMLALAMVSLEMEKLIPDWLPLTIELLQKAQMDSSQLIHCRELVAYHLSALQSSLPL NSVYVYRPLKHTLVTCDKGAFKLHPSSISGPDFSKDNSKPEVPVRGPAAFHLHLPAVSGCKHTSAKRKVEEMEVDDLYDGIKRLYNEDSGSENVGSVCGTDLSRQEGHASPCPPLQPVSVM hide sequence

Ensembl Acc Id:

ENSRNOP00000002924 ⟸ ENSRNOT00000002924

RefSeq Acc Id:	XP_063128970 ⟸ XM_063272900
- Peptide Label:	isoform X2

Protein Domains

Cyclin-like

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A5E4-F1-model_v2	AlphaFold	D4A5E4	1-377	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13699206

Promoter ID:

EPDNEW_R9731

Type:

multiple initiation site

Name:

Ccni_1

Description:

cyclin I

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	16,341,531 - 16,341,591	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-16282	BioCyc
Ensembl Genes	ENSRNOG00000002125	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000002924	ENTREZGENE
	ENSRNOT00000002924.6	UniProtKB/TrEMBL
	ENSRNOT00000137202	ENTREZGENE
Gene3D-CATH	Cyclin-like	UniProtKB/TrEMBL
InterPro	Cyclin	UniProtKB/TrEMBL
	Cyclin-like_sf	UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/TrEMBL
	Cyclin_related	UniProtKB/TrEMBL
KEGG Report	rno:289500	UniProtKB/TrEMBL
NCBI Gene	289500	ENTREZGENE
PANTHER	PTHR10177	UniProtKB/TrEMBL
Pfam	Cyclin_N	UniProtKB/TrEMBL
PhenoGen	Ccni	PhenoGen
RatGTEx	ENSRNOG00000002125	RatGTEx
SMART	CYCLIN	UniProtKB/TrEMBL
Superfamily-SCOP	Cyclin_like	UniProtKB/TrEMBL
UniProt	A6KK51	ENTREZGENE, UniProtKB/TrEMBL
	D4A5E4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Ccni	cyclin I	Ccni_predicted	cyclin I (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Ccni_predicted	cyclin I (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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