CCNI (cyclin I) - Rat Genome Database

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Gene: CCNI (cyclin I) Homo sapiens
Analyze
Symbol: CCNI
Name: cyclin I
RGD ID: 1319424
HGNC Page HGNC:1595
Description: Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in G1/S transition of mitotic cell cycle. Predicted to be located in nuclear membrane. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CCNI1; CYC1; cyclin ITI; cyclin-I; CYI
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38477,047,155 - 77,075,989 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl477,047,155 - 77,076,309 (-)EnsemblGRCh38hg38GRCh38
GRCh37477,968,308 - 77,997,142 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36478,188,189 - 78,216,149 (-)NCBINCBI36Build 36hg18NCBI36
Build 34478,326,353 - 78,354,304NCBI
Celera475,270,553 - 75,298,504 (-)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef473,720,994 - 73,748,951 (-)NCBIHuRef
CHM1_1477,946,423 - 77,974,382 (-)NCBICHM1_1
T2T-CHM13v2.0480,387,967 - 80,416,780 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7493655   PMID:8125298   PMID:9705831   PMID:12477932   PMID:15489334   PMID:17043677   PMID:17507299   PMID:19322201   PMID:21873635   PMID:21988832   PMID:22658674   PMID:23907122  
PMID:25640309   PMID:25852190   PMID:26698249   PMID:30797814   PMID:32296183   PMID:32456285   PMID:32513696   PMID:33637726   PMID:33961781   PMID:36736316   PMID:37081792  


Genomics

Comparative Map Data
CCNI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38477,047,155 - 77,075,989 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl477,047,155 - 77,076,309 (-)EnsemblGRCh38hg38GRCh38
GRCh37477,968,308 - 77,997,142 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36478,188,189 - 78,216,149 (-)NCBINCBI36Build 36hg18NCBI36
Build 34478,326,353 - 78,354,304NCBI
Celera475,270,553 - 75,298,504 (-)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef473,720,994 - 73,748,951 (-)NCBIHuRef
CHM1_1477,946,423 - 77,974,382 (-)NCBICHM1_1
T2T-CHM13v2.0480,387,967 - 80,416,780 (-)NCBIT2T-CHM13v2.0
Ccni
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39593,329,796 - 93,354,348 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl593,329,792 - 93,354,354 (-)EnsemblGRCm39 Ensembl
GRCm38593,181,933 - 93,206,495 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl593,181,933 - 93,206,495 (-)EnsemblGRCm38mm10GRCm38
MGSCv37593,610,959 - 93,635,521 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36594,257,141 - 94,281,232 (-)NCBIMGSCv36mm8
Celera591,335,519 - 91,360,075 (-)NCBICelera
Cytogenetic Map5E2NCBI
cM Map547.29NCBI
Ccni
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81415,164,047 - 15,186,885 (+)NCBIGRCr8
mRatBN7.21414,879,698 - 14,902,510 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1414,879,717 - 14,902,510 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1414,888,988 - 14,911,658 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01416,208,004 - 16,230,674 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01414,903,257 - 14,925,929 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01416,341,510 - 16,364,326 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1416,341,536 - 16,364,326 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01416,267,506 - 16,290,318 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41416,437,340 - 16,460,130 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11416,437,274 - 16,460,127 (+)NCBI
Celera1414,282,201 - 14,304,991 (+)NCBICelera
Cytogenetic Map14p22NCBI
Ccni
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554331,698,568 - 1,735,196 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554331,698,568 - 1,735,196 (-)NCBIChiLan1.0ChiLan1.0
CCNI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2352,986,685 - 53,022,812 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1453,182,420 - 53,215,473 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0447,129,542 - 47,158,419 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1452,968,082 - 52,996,932 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl452,968,082 - 52,996,932 (+)Ensemblpanpan1.1panPan2
CCNI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1321,612,590 - 1,650,661 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl321,608,330 - 1,645,352 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3240,236,220 - 40,274,002 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0321,642,080 - 1,680,282 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl321,637,827 - 1,680,282 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1321,634,137 - 1,672,319 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0321,589,677 - 1,627,852 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03238,547,915 - 38,585,702 (+)NCBIUU_Cfam_GSD_1.0
Ccni
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528510,538,770 - 10,559,788 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936676947,455 - 968,479 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl872,686,106 - 72,719,065 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1872,686,095 - 72,719,307 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2876,887,178 - 76,919,644 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCNI
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1725,547,692 - 25,576,412 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660373,901,103 - 3,931,303 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccni
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475713,887,997 - 13,927,712 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCNI
7 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 4q21.1-21.23(chr4:75453111-84094295)x1 copy number loss See cases [RCV000050786] Chr4:75453111..84094295 [GRCh38]
Chr4:76378321..85015448 [GRCh37]
Chr4:76597345..85234472 [NCBI36]
Chr4:4q21.1-21.23
pathogenic
GRCh38/hg38 4q13.3-21.21(chr4:71128874-78099088)x3 copy number gain See cases [RCV000051774] Chr4:71128874..78099088 [GRCh38]
Chr4:71994591..79020242 [GRCh37]
Chr4:72213455..79239266 [NCBI36]
Chr4:4q13.3-21.21
pathogenic
GRCh38/hg38 4q12-22.3(chr4:51831622-97505618)x3 copy number gain See cases [RCV000051772] Chr4:51831622..97505618 [GRCh38]
Chr4:52697788..98426769 [GRCh37]
Chr4:52392545..98645792 [NCBI36]
Chr4:4q12-22.3
pathogenic
GRCh38/hg38 4q13.2-21.23(chr4:67869564-85517308)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053294]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053294]|See cases [RCV000053294] Chr4:67869564..85517308 [GRCh38]
Chr4:68735282..86438461 [GRCh37]
Chr4:68417877..86657485 [NCBI36]
Chr4:4q13.2-21.23
pathogenic
GRCh38/hg38 4q13.3-21.22(chr4:71079179-81802208)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053295]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053295]|See cases [RCV000053295] Chr4:71079179..81802208 [GRCh38]
Chr4:71944896..82723361 [GRCh37]
Chr4:72163760..82942385 [NCBI36]
Chr4:4q13.3-21.22
pathogenic
GRCh38/hg38 4q13.3-22.1(chr4:74031395-90421127)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053296]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053296]|See cases [RCV000053296] Chr4:74031395..90421127 [GRCh38]
Chr4:74897112..91342278 [GRCh37]
Chr4:75115976..91561301 [NCBI36]
Chr4:4q13.3-22.1
pathogenic
GRCh38/hg38 4q13.3-21.3(chr4:72262258-86002147)x3 copy number gain See cases [RCV000138312] Chr4:72262258..86002147 [GRCh38]
Chr4:73127975..86923300 [GRCh37]
Chr4:73346839..87142324 [NCBI36]
Chr4:4q13.3-21.3
pathogenic
GRCh38/hg38 4q21.1-21.21(chr4:75801143-79005805)x3 copy number gain See cases [RCV000141486] Chr4:75801143..79005805 [GRCh38]
Chr4:76722296..79926959 [GRCh37]
Chr4:76941320..80145983 [NCBI36]
Chr4:4q21.1-21.21
pathogenic
GRCh38/hg38 4q13.2-22.3(chr4:68686088-95294456)x3 copy number gain See cases [RCV000143458] Chr4:68686088..95294456 [GRCh38]
Chr4:69551806..96215607 [GRCh37]
Chr4:69234401..96434630 [NCBI36]
Chr4:4q13.2-22.3
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:12440-190904441)x3 copy number gain See cases [RCV000446653] Chr4:12440..190904441 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473) copy number gain See cases [RCV000510453] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
NM_006835.3(CCNI):c.568G>A (p.Ala190Thr) single nucleotide variant not specified [RCV004315940] Chr4:77055272 [GRCh38]
Chr4:77976425 [GRCh37]
Chr4:4q21.1
uncertain significance
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473)x3 copy number gain See cases [RCV000512241] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190915650)x3 copy number gain not provided [RCV000743155] Chr4:49450..190915650 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190963766)x3 copy number gain not provided [RCV000743156] Chr4:49450..190963766 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:11525-191028879)x3 copy number gain not provided [RCV000743147] Chr4:11525..191028879 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4q13.2-21.21(chr4:68950363-79738598)x1 copy number loss not provided [RCV001005553] Chr4:68950363..79738598 [GRCh37]
Chr4:4q13.2-21.21
pathogenic
GRCh37/hg19 4q13.3-21.23(chr4:72680879-86426232)x1 copy number loss not provided [RCV001005556] Chr4:72680879..86426232 [GRCh37]
Chr4:4q13.3-21.23
pathogenic
GRCh37/hg19 4q21.1(chr4:77242490-78093831)x1 copy number loss not provided [RCV001005561] Chr4:77242490..78093831 [GRCh37]
Chr4:4q21.1
uncertain significance
NM_006835.3(CCNI):c.899T>C (p.Val300Ala) single nucleotide variant not specified [RCV004285856] Chr4:77048454 [GRCh38]
Chr4:77969607 [GRCh37]
Chr4:4q21.1
uncertain significance
GRCh37/hg19 4q13.2-21.22(chr4:68242784-82991431)x3 copy number gain not provided [RCV000845944] Chr4:68242784..82991431 [GRCh37]
Chr4:4q13.2-21.22
pathogenic
GRCh37/hg19 4q21.1(chr4:77278194-78393601)x3 copy number gain not provided [RCV000848750] Chr4:77278194..78393601 [GRCh37]
Chr4:4q21.1
uncertain significance
GRCh37/hg19 4q21.1(chr4:77278194-78393601)x3 copy number gain not provided [RCV000846115] Chr4:77278194..78393601 [GRCh37]
Chr4:4q21.1
uncertain significance
GRCh37/hg19 4q13.3-21.1(chr4:71561780-78304341)x1 copy number loss not provided [RCV000846231] Chr4:71561780..78304341 [GRCh37]
Chr4:4q13.3-21.1
pathogenic
GRCh37/hg19 4q13.3-21.3(chr4:71412409-87920784)x1 copy number loss See cases [RCV001263040] Chr4:71412409..87920784 [GRCh37]
Chr4:4q13.3-21.3
pathogenic
GRCh37/hg19 4q13.3-22.1(chr4:75737340-91131156) copy number gain not specified [RCV002053429] Chr4:75737340..91131156 [GRCh37]
Chr4:4q13.3-22.1
pathogenic
GRCh37/hg19 4q12-31.21(chr4:52866944-143582507)x3 copy number gain not provided [RCV001827738] Chr4:52866944..143582507 [GRCh37]
Chr4:4q12-31.21
pathogenic
GRCh37/hg19 4q13.3-21.21(chr4:73055313-80083154) copy number loss not specified [RCV002053427] Chr4:73055313..80083154 [GRCh37]
Chr4:4q13.3-21.21
pathogenic
NC_000004.12:g.67833055_82716065del deletion See cases [RCV003313802] Chr4:67833055..82716065 [GRCh38]
Chr4:4q13.2-21.22
pathogenic
NM_006835.3(CCNI):c.733C>T (p.His245Tyr) single nucleotide variant not specified [RCV004121037] Chr4:77048620 [GRCh38]
Chr4:77969773 [GRCh37]
Chr4:4q21.1
uncertain significance
NM_006835.3(CCNI):c.179A>G (p.Asn60Ser) single nucleotide variant not specified [RCV004089892] Chr4:77058571 [GRCh38]
Chr4:77979724 [GRCh37]
Chr4:4q21.1
uncertain significance
GRCh37/hg19 4q13.3-21.21(chr4:74822261-79345650)x1 copy number loss not specified [RCV003986507] Chr4:74822261..79345650 [GRCh37]
Chr4:4q13.3-21.21
uncertain significance
GRCh37/hg19 4p12-q35.2(chr4:45455621-191003541)x3 copy number gain not provided [RCV003885507] Chr4:45455621..191003541 [GRCh37]
Chr4:4p12-q35.2
pathogenic
NM_006835.3(CCNI):c.616A>G (p.Met206Val) single nucleotide variant not specified [RCV004430762] Chr4:77055224 [GRCh38]
Chr4:77976377 [GRCh37]
Chr4:4q21.1
uncertain significance
NM_006835.3(CCNI):c.238G>A (p.Val80Ile) single nucleotide variant not specified [RCV004430761] Chr4:77058512 [GRCh38]
Chr4:77979665 [GRCh37]
Chr4:4q21.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1198
Count of miRNA genes:705
Interacting mature miRNAs:800
Transcripts:ENST00000237654, ENST00000504697, ENST00000505609, ENST00000506614, ENST00000507788, ENST00000511943, ENST00000513774, ENST00000515468, ENST00000515790, ENST00000537948
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-59775  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37477,969,307 - 77,969,453UniSTSGRCh37
Build 36478,188,331 - 78,188,477RGDNCBI36
Celera475,270,695 - 75,270,841RGD
Cytogenetic Map4q21.1UniSTS
HuRef473,721,136 - 73,721,282UniSTS
GeneMap99-GB4 RH Map4443.86UniSTS
SHGC-80948  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37477,977,118 - 77,977,429UniSTSGRCh37
Build 36478,196,142 - 78,196,453RGDNCBI36
Celera475,278,506 - 75,278,817RGD
Cytogenetic Map4q21.1UniSTS
HuRef473,728,947 - 73,729,258UniSTS
TNG Radiation Hybrid Map444931.0UniSTS
SHGC-85345  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37477,977,251 - 77,977,586UniSTSGRCh37
Build 36478,196,275 - 78,196,610RGDNCBI36
Celera475,278,639 - 75,278,974RGD
Cytogenetic Map4q21.1UniSTS
HuRef473,729,080 - 73,729,415UniSTS
TNG Radiation Hybrid Map444925.0UniSTS
SHGC-132958  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37477,991,746 - 77,992,075UniSTSGRCh37
Build 36478,210,770 - 78,211,099RGDNCBI36
Celera475,293,126 - 75,293,455RGD
Cytogenetic Map4q21.1UniSTS
HuRef473,743,572 - 73,743,901UniSTS
TNG Radiation Hybrid Map444904.0UniSTS
D4S494  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37477,985,436 - 77,985,603UniSTSGRCh37
Build 36478,204,460 - 78,204,627RGDNCBI36
Celera475,286,823 - 75,286,990RGD
Cytogenetic Map4q21.1UniSTS
HuRef473,737,265 - 73,737,432UniSTS
TNG Radiation Hybrid Map444994.0UniSTS
D4S3098  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37477,969,256 - 77,969,448UniSTSGRCh37
Build 36478,188,280 - 78,188,472RGDNCBI36
Celera475,270,644 - 75,270,836RGD
Cytogenetic Map4q21.1UniSTS
HuRef473,721,085 - 73,721,277UniSTS
Whitehead-YAC Contig Map4 UniSTS
SHGC-64017  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37477,970,151 - 77,970,267UniSTSGRCh37
Build 36478,189,175 - 78,189,291RGDNCBI36
Celera475,271,539 - 75,271,655RGD
Cytogenetic Map4q21.1UniSTS
HuRef473,721,980 - 73,722,096UniSTS
TNG Radiation Hybrid Map444976.0UniSTS
STS-N58372  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37477,970,152 - 77,970,424UniSTSGRCh37
Build 36478,189,176 - 78,189,448RGDNCBI36
Celera475,271,540 - 75,271,812RGD
Cytogenetic Map4q21.1UniSTS
HuRef473,721,981 - 73,722,253UniSTS
TNG Radiation Hybrid Map444976.0UniSTS
GeneMap99-GB4 RH Map4437.81UniSTS
NCBI RH Map4903.2UniSTS
SHGC-58048  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37477,991,760 - 77,991,995UniSTSGRCh37
Build 36478,210,784 - 78,211,019RGDNCBI36
Celera475,293,140 - 75,293,375RGD
Cytogenetic Map4q21.1UniSTS
HuRef473,743,586 - 73,743,821UniSTS
SHGC-67650  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37477,970,283 - 77,970,423UniSTSGRCh37
Build 36478,189,307 - 78,189,447RGDNCBI36
Celera475,271,671 - 75,271,811RGD
Cytogenetic Map4q21.1UniSTS
HuRef473,722,112 - 73,722,252UniSTS
GeneMap99-GB4 RH Map4443.86UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2437 2788 2253 4973 1726 2351 6 624 1951 465 2269 7305 6471 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001348132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB209766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC104771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC111196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF135162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK222931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK312632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY207372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT020019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR541783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D50310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000237654   ⟹   ENSP00000237654
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl477,047,155 - 77,075,989 (-)Ensembl
Ensembl Acc Id: ENST00000504697
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl477,056,065 - 77,065,080 (-)Ensembl
Ensembl Acc Id: ENST00000505609   ⟹   ENSP00000426467
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl477,056,044 - 77,074,910 (-)Ensembl
Ensembl Acc Id: ENST00000506614
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl477,055,234 - 77,056,485 (-)Ensembl
Ensembl Acc Id: ENST00000507788   ⟹   ENSP00000421594
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl477,047,155 - 77,076,309 (-)Ensembl
Ensembl Acc Id: ENST00000511943   ⟹   ENSP00000425360
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl477,055,323 - 77,075,693 (-)Ensembl
Ensembl Acc Id: ENST00000513774   ⟹   ENSP00000426235
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl477,058,510 - 77,075,332 (-)Ensembl
Ensembl Acc Id: ENST00000515468   ⟹   ENSP00000425935
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl477,048,115 - 77,056,049 (-)Ensembl
Ensembl Acc Id: ENST00000515790
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl477,066,165 - 77,075,620 (-)Ensembl
Ensembl Acc Id: ENST00000718433   ⟹   ENSP00000520818
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl477,047,155 - 77,075,989 (-)Ensembl
RefSeq Acc Id: NM_001348132   ⟹   NP_001335061
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38477,047,155 - 77,075,989 (-)NCBI
T2T-CHM13v2.0480,387,967 - 80,416,780 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348133   ⟹   NP_001335062
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38477,047,155 - 77,074,910 (-)NCBI
T2T-CHM13v2.0480,387,967 - 80,415,701 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348134   ⟹   NP_001335063
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38477,047,155 - 77,075,989 (-)NCBI
T2T-CHM13v2.0480,387,967 - 80,416,780 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348135   ⟹   NP_001335064
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38477,047,155 - 77,075,989 (-)NCBI
T2T-CHM13v2.0480,387,967 - 80,416,780 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348136   ⟹   NP_001335065
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38477,047,155 - 77,075,989 (-)NCBI
T2T-CHM13v2.0480,387,967 - 80,416,780 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348137   ⟹   NP_001335066
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38477,047,155 - 77,075,989 (-)NCBI
T2T-CHM13v2.0480,387,967 - 80,416,780 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348138   ⟹   NP_001335067
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38477,047,155 - 77,075,989 (-)NCBI
T2T-CHM13v2.0480,387,967 - 80,416,780 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348139   ⟹   NP_001335068
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38477,047,155 - 77,075,989 (-)NCBI
T2T-CHM13v2.0480,387,967 - 80,416,780 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348140   ⟹   NP_001335069
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38477,047,155 - 77,075,989 (-)NCBI
T2T-CHM13v2.0480,387,967 - 80,416,780 (-)NCBI
Sequence:
RefSeq Acc Id: NM_006835   ⟹   NP_006826
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38477,047,155 - 77,075,989 (-)NCBI
GRCh37477,968,308 - 77,998,719 (-)NCBI
Build 36478,188,189 - 78,216,149 (-)NCBI Archive
Celera475,270,553 - 75,298,504 (-)RGD
HuRef473,720,994 - 73,748,951 (-)RGD
CHM1_1477,946,423 - 77,974,382 (-)NCBI
T2T-CHM13v2.0480,387,967 - 80,416,780 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001335061 (Get FASTA)   NCBI Sequence Viewer  
  NP_001335062 (Get FASTA)   NCBI Sequence Viewer  
  NP_001335063 (Get FASTA)   NCBI Sequence Viewer  
  NP_001335064 (Get FASTA)   NCBI Sequence Viewer  
  NP_001335065 (Get FASTA)   NCBI Sequence Viewer  
  NP_001335066 (Get FASTA)   NCBI Sequence Viewer  
  NP_001335067 (Get FASTA)   NCBI Sequence Viewer  
  NP_001335068 (Get FASTA)   NCBI Sequence Viewer  
  NP_001335069 (Get FASTA)   NCBI Sequence Viewer  
  NP_006826 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF43786 (Get FASTA)   NCBI Sequence Viewer  
  AAH00420 (Get FASTA)   NCBI Sequence Viewer  
  AAH04975 (Get FASTA)   NCBI Sequence Viewer  
  AAO13492 (Get FASTA)   NCBI Sequence Viewer  
  AAV38822 (Get FASTA)   NCBI Sequence Viewer  
  BAA08849 (Get FASTA)   NCBI Sequence Viewer  
  BAD93003 (Get FASTA)   NCBI Sequence Viewer  
  BAD96651 (Get FASTA)   NCBI Sequence Viewer  
  BAG35517 (Get FASTA)   NCBI Sequence Viewer  
  BAH13410 (Get FASTA)   NCBI Sequence Viewer  
  CAG46582 (Get FASTA)   NCBI Sequence Viewer  
  EAX05808 (Get FASTA)   NCBI Sequence Viewer  
  EAX05809 (Get FASTA)   NCBI Sequence Viewer  
  EAX05810 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000237654
  ENSP00000237654.4
  ENSP00000421594
  ENSP00000421594.1
  ENSP00000425360.1
  ENSP00000425935.1
  ENSP00000426235.1
  ENSP00000426467.1
  ENSP00000520818
GenBank Protein Q14094 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_006826   ⟸   NM_006835
- Peptide Label: isoform a
- UniProtKB: B2R6M0 (UniProtKB/Swiss-Prot),   B7Z6X4 (UniProtKB/Swiss-Prot),   Q14094 (UniProtKB/Swiss-Prot),   Q6FHH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335063   ⟸   NM_001348134
- Peptide Label: isoform b
- UniProtKB: Q53GK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335061   ⟸   NM_001348132
- Peptide Label: isoform a
- UniProtKB: B2R6M0 (UniProtKB/Swiss-Prot),   B7Z6X4 (UniProtKB/Swiss-Prot),   Q14094 (UniProtKB/Swiss-Prot),   Q6FHH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335068   ⟸   NM_001348139
- Peptide Label: isoform g
- Sequence:
RefSeq Acc Id: NP_001335065   ⟸   NM_001348136
- Peptide Label: isoform d
- UniProtKB: Q6FHH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335066   ⟸   NM_001348137
- Peptide Label: isoform e
- UniProtKB: Q6FHH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335067   ⟸   NM_001348138
- Peptide Label: isoform f
- Sequence:
RefSeq Acc Id: NP_001335064   ⟸   NM_001348135
- Peptide Label: isoform c
- UniProtKB: Q6FHH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335069   ⟸   NM_001348140
- Peptide Label: isoform h
- Sequence:
RefSeq Acc Id: NP_001335062   ⟸   NM_001348133
- Peptide Label: isoform a
- UniProtKB: B2R6M0 (UniProtKB/Swiss-Prot),   B7Z6X4 (UniProtKB/Swiss-Prot),   Q14094 (UniProtKB/Swiss-Prot),   Q6FHH0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000426467   ⟸   ENST00000505609
Ensembl Acc Id: ENSP00000421594   ⟸   ENST00000507788
Ensembl Acc Id: ENSP00000425360   ⟸   ENST00000511943
Ensembl Acc Id: ENSP00000237654   ⟸   ENST00000237654
Ensembl Acc Id: ENSP00000426235   ⟸   ENST00000513774
Ensembl Acc Id: ENSP00000425935   ⟸   ENST00000515468
Ensembl Acc Id: ENSP00000520818   ⟸   ENST00000718433
Protein Domains
Cyclin N-terminal   Cyclin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q14094-F1-model_v2 AlphaFold Q14094 1-377 view protein structure

Promoters
RGD ID:6867792
Promoter ID:EPDNEW_H7061
Type:initiation region
Name:CCNI_1
Description:cyclin I
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38477,075,989 - 77,076,049EPDNEW
RGD ID:6802111
Promoter ID:HG_KWN:48550
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000252412
Position:
Human AssemblyChrPosition (strand)Source
Build 36478,215,656 - 78,216,572 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1595 AgrOrtholog
COSMIC CCNI COSMIC
Ensembl Genes ENSG00000118816 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000237654 ENTREZGENE
  ENST00000237654.9 UniProtKB/Swiss-Prot
  ENST00000505609.5 UniProtKB/TrEMBL
  ENST00000507788 ENTREZGENE
  ENST00000507788.2 UniProtKB/TrEMBL
  ENST00000511943.5 UniProtKB/TrEMBL
  ENST00000513774.1 UniProtKB/TrEMBL
  ENST00000515468.1 UniProtKB/TrEMBL
  ENST00000718433 ENTREZGENE
Gene3D-CATH Cyclin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000118816 GTEx
HGNC ID HGNC:1595 ENTREZGENE
Human Proteome Map CCNI Human Proteome Map
InterPro Cyclin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:10983 UniProtKB/Swiss-Prot
NCBI Gene 10983 ENTREZGENE
OMIM 618783 OMIM
PANTHER PTHR10177 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10177:SF187 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cyclin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26160 PharmGKB
SMART CYCLIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2R6M0 ENTREZGENE
  B7Z6X4 ENTREZGENE
  CCNI_HUMAN UniProtKB/Swiss-Prot
  D6RDK3_HUMAN UniProtKB/TrEMBL
  D6REZ3_HUMAN UniProtKB/TrEMBL
  D6RG12_HUMAN UniProtKB/TrEMBL
  D6RH01_HUMAN UniProtKB/TrEMBL
  H0YA27_HUMAN UniProtKB/TrEMBL
  Q14094 ENTREZGENE
  Q53GK0 ENTREZGENE, UniProtKB/TrEMBL
  Q6FHH0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B2R6M0 UniProtKB/Swiss-Prot
  B7Z6X4 UniProtKB/Swiss-Prot