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Gene: Scyl3 (SCY1 like pseudokinase 3) Rattus norvegicus

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Symbol:

Scyl3

Name:

SCY1 like pseudokinase 3

RGD ID:

1308992

Description:

Predicted to enable identical protein binding activity. Predicted to act upstream of or within inflammatory response; neuron differentiation; and protein localization. Predicted to be located in several cellular components, including Golgi membrane; endoplasmic reticulum; and lamellipodium. Orthologous to human SCYL3 (SCY1 like pseudokinase 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; decabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC360866; protein-associating with the carboxyl-terminal domain of ezrin; RGD1308992; SCY1-like 3; SCY1-like 3 (S. cerevisiae); SCY1-like, kinase-like 3; similar to ezrin-binding partner PACE-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SCYL3 (SCY1 like pseudokinase 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Scyl3 (SCY1-like 3 (S. cerevisiae))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Scyl3 (SCY1 like pseudokinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SCYL3 (SCY1 like pseudokinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SCYL3 (SCY1 like pseudokinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Scyl3 (SCY1 like pseudokinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SCYL3 (SCY1 like pseudokinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SCYL3 (SCY1 like pseudokinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Scyl3 (SCY1 like pseudokinase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Scyl3 (SCY1-like 3 (S. cerevisiae))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SCYL3 (SCY1 like pseudokinase 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	scyl3 (SCY1-like, kinase-like 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1344	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	scyl3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	78,811,595 - 78,836,202 (+)	NCBI		GRCr8
mRatBN7.2	13	76,278,428 - 76,303,038 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	76,278,428 - 76,301,716 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	78,896,495 - 78,919,783 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	80,200,830 - 80,224,120 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	77,455,414 - 77,478,704 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	82,230,938 - 82,255,640 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	82,231,030 - 82,254,318 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	87,103,921 - 87,128,610 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	79,687,546 - 79,710,834 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	79,704,000 - 79,724,634 (+)	NCBI
Celera	13	76,012,137 - 76,035,426 (+)	NCBI		Celera
Cytogenetic Map	13	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scyl3	Rat	1q24 Deletion Syndrome		ISO	SCYL3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: 1q24q25 microdeletion syndrome	ClinVar	PMID:25741868
Scyl3	Rat	gastrointestinal stromal tumor		ISO	SCYL3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
Scyl3	Rat	parathyroid carcinoma		ISO	SCYL3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scyl3	Rat	(-)-epigallocatechin 3-gallate	multiple interactions	ISO	SCYL3 (Homo sapiens)	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of SCYL3 mRNA	CTD	PMID:22079256
Scyl3	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Scyl3 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of SCYL3 mRNA	CTD	PMID:36331819
Scyl3	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Scyl3 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of SCYL3 mRNA	CTD	PMID:22206623
Scyl3	Rat	17beta-estradiol	increases expression	ISO	Scyl3 (Mus musculus)	6480464	Estradiol results in increased expression of SCYL3 mRNA	CTD	PMID:39298647
Scyl3	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Scyl3 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of SCYL3 mRNA	CTD	PMID:21570461
Scyl3	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of SCYL3 mRNA	CTD	PMID:33387578
Scyl3	Rat	2-hydroxypropanoic acid	decreases expression	ISO	SCYL3 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of SCYL3 mRNA	CTD	PMID:30851411
Scyl3	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Scyl3 (Mus musculus)	6480464	bisphenol S results in increased expression of SCYL3 mRNA	CTD	PMID:39298647
Scyl3	Rat	afimoxifene	multiple interactions	ISO	SCYL3 (Homo sapiens)	6480464	afimoxifene inhibits the reaction [Estrogens results in decreased expression of SCYL3 mRNA]	CTD	PMID:21233418
Scyl3	Rat	aflatoxin B1	increases expression	ISO	Scyl3 (Mus musculus)	6480464	Aflatoxin B1 results in increased expression of SCYL3 mRNA	CTD	PMID:19770486
Scyl3	Rat	aflatoxin B1	decreases methylation	ISO	SCYL3 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of SCYL3 gene	CTD	PMID:27153756
Scyl3	Rat	arsane	multiple interactions	ISO	SCYL3 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of SCYL3 mRNA	CTD	PMID:39836092
Scyl3	Rat	arsenic atom	multiple interactions	ISO	SCYL3 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of SCYL3 mRNA	CTD	PMID:39836092
Scyl3	Rat	benzo[a]pyrene	increases expression	ISO	Scyl3 (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of SCYL3 mRNA	CTD	PMID:22228805 and PMID:27195522
Scyl3	Rat	benzo[a]pyrene	affects methylation	ISO	SCYL3 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of SCYL3 5' UTR	CTD	PMID:27901495
Scyl3	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of SCYL3 mRNA	CTD	PMID:25181051
Scyl3	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of SCYL3 gene	CTD	PMID:28505145
Scyl3	Rat	cadmium atom	multiple interactions	ISO	SCYL3 (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of SCYL3 mRNA	CTD	PMID:35301059
Scyl3	Rat	cadmium dichloride	multiple interactions	ISO	SCYL3 (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of SCYL3 mRNA	CTD	PMID:35301059
Scyl3	Rat	CGP 52608	multiple interactions	ISO	SCYL3 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to SCYL3 gene]	CTD	PMID:28238834
Scyl3	Rat	cisplatin	increases expression	ISO	SCYL3 (Homo sapiens)	6480464	Cisplatin results in increased expression of SCYL3 mRNA	CTD	PMID:27392435
Scyl3	Rat	copper(II) sulfate	decreases expression	ISO	SCYL3 (Homo sapiens)	6480464	Copper Sulfate results in decreased expression of SCYL3 mRNA	CTD	PMID:19549813
Scyl3	Rat	cyclosporin A	decreases expression	ISO	SCYL3 (Homo sapiens)	6480464	Cyclosporine results in decreased expression of SCYL3 mRNA	CTD	PMID:25562108
Scyl3	Rat	cyclosporin A	increases methylation	ISO	SCYL3 (Homo sapiens)	6480464	Cyclosporine results in increased methylation of SCYL3 promoter	CTD	PMID:27989131
Scyl3	Rat	decabromodiphenyl ether	decreases expression	EXP		6480464	decabromobiphenyl ether results in decreased expression of SCYL3 mRNA	CTD	PMID:23640034
Scyl3	Rat	Dibutyl phosphate	affects expression	ISO	SCYL3 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of SCYL3 mRNA	CTD	PMID:37042841
Scyl3	Rat	dicrotophos	decreases expression	ISO	SCYL3 (Homo sapiens)	6480464	dicrotophos results in decreased expression of SCYL3 mRNA	CTD	PMID:28302478
Scyl3	Rat	inulin	multiple interactions	ISO	Scyl3 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of SCYL3 mRNA	CTD	PMID:36331819
Scyl3	Rat	iron dichloride	decreases expression	ISO	SCYL3 (Homo sapiens)	6480464	ferrous chloride results in decreased expression of SCYL3 mRNA	CTD	PMID:35984750
Scyl3	Rat	methyl methanesulfonate	increases expression	ISO	SCYL3 (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of SCYL3 mRNA	CTD	PMID:23649840
Scyl3	Rat	nickel atom	decreases expression	ISO	SCYL3 (Homo sapiens)	6480464	Nickel results in decreased expression of SCYL3 mRNA	CTD	PMID:23195993
Scyl3	Rat	paracetamol	affects expression	ISO	Scyl3 (Mus musculus)	6480464	Acetaminophen affects the expression of SCYL3 mRNA	CTD	PMID:17562736
Scyl3	Rat	paracetamol	decreases expression	ISO	SCYL3 (Homo sapiens)	6480464	Acetaminophen results in decreased expression of SCYL3 mRNA	CTD	PMID:21420995
Scyl3	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Scyl3 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of SCYL3 mRNA and [perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of SCYL3 mRNA	CTD	PMID:36331819
Scyl3	Rat	phenobarbital	affects expression	ISO	Scyl3 (Mus musculus)	6480464	Phenobarbital affects the expression of SCYL3 mRNA	CTD	PMID:23091169
Scyl3	Rat	potassium chromate	decreases expression	ISO	SCYL3 (Homo sapiens)	6480464	potassium chromate(VI) results in decreased expression of SCYL3 mRNA	CTD	PMID:22079256
Scyl3	Rat	potassium chromate	multiple interactions	ISO	SCYL3 (Homo sapiens)	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of SCYL3 mRNA	CTD	PMID:22079256
Scyl3	Rat	rac-lactic acid	decreases expression	ISO	SCYL3 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of SCYL3 mRNA	CTD	PMID:30851411
Scyl3	Rat	sodium arsenate	increases expression	ISO	Scyl3 (Mus musculus)	6480464	sodium arsenate results in increased expression of SCYL3 mRNA	CTD	PMID:21795629
Scyl3	Rat	sodium arsenite	multiple interactions	ISO	SCYL3 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of SCYL3 mRNA	CTD	PMID:39836092
Scyl3	Rat	succimer	multiple interactions	ISO	Scyl3 (Mus musculus)	6480464	[Succimer binds to Magnetite Nanoparticles] which results in decreased expression of SCYL3 mRNA	CTD	PMID:21641980
Scyl3	Rat	tetrachloromethane	decreases expression	EXP		6480464	Carbon Tetrachloride results in decreased expression of SCYL3 mRNA	CTD	PMID:30723492
Scyl3	Rat	tetraphene	increases expression	ISO	Scyl3 (Mus musculus)	6480464	benz(a)anthracene results in increased expression of SCYL3 mRNA	CTD	PMID:26377693
Scyl3	Rat	troglitazone	decreases expression	ISO	Scyl3 (Mus musculus)	6480464	troglitazone results in decreased expression of SCYL3 mRNA	CTD	PMID:28973697
Scyl3	Rat	valproic acid	affects expression	ISO	SCYL3 (Homo sapiens)	6480464	Valproic Acid affects the expression of SCYL3 mRNA	CTD	PMID:25979313
Scyl3	Rat	vinclozolin	decreases expression	EXP		6480464	vinclozolin results in decreased expression of SCYL3 mRNA	CTD	PMID:23034163

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scyl3	Rat	inflammatory response	acts_upstream_of_or_within	ISO	Scyl3 (Mus musculus)	1624291	MGI:1931787 PMID:29437892	RGD	PMID:29437892
Scyl3	Rat	inflammatory response	acts_upstream_of_or_within	IEA	UniProtKB:Q9DBQ7 and ensembl:ENSMUSP00000027876	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Scyl3	Rat	neuron development	acts_upstream_of_or_within	ISO	Scyl3 (Mus musculus)	1624291	MGI:1931787 PMID:29437892	RGD	PMID:29437892
Scyl3	Rat	neuron development	acts_upstream_of_or_within	IEA	UniProtKB:Q9DBQ7 and ensembl:ENSMUSP00000027876	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Scyl3	Rat	protein localization	acts_upstream_of_or_within	IEA	UniProtKB:Q9DBQ7 and ensembl:ENSMUSP00000027876	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Scyl3	Rat	protein localization	acts_upstream_of_or_within	ISO	Scyl3 (Mus musculus)	1624291	MGI:1931787 PMID:29437892	RGD	PMID:29437892
Scyl3	Rat	spinal cord motor neuron differentiation	acts_upstream_of_or_within	IEA	UniProtKB:Q9DBQ7 and ensembl:ENSMUSP00000027876	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Scyl3	Rat	spinal cord motor neuron differentiation	acts_upstream_of_or_within	ISO	Scyl3 (Mus musculus)	1624291	MGI:1931787 PMID:29437892	RGD	PMID:29437892

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scyl3	Rat	cytoplasm	located_in	ISO	SCYL3 (Homo sapiens)	1624291	PMID:12651155	RGD	PMID:12651155
Scyl3	Rat	cytoplasm	located_in	IEA	UniProtKB:Q8IZE3 and ensembl:ENSP00000356745	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Scyl3	Rat	cytosol	located_in	IEA	UniProtKB:Q8IZE3 and ensembl:ENSP00000356745	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Scyl3	Rat	cytosol	located_in	ISO	SCYL3 (Homo sapiens) more ...	1624291		RGD	GO_REF:0000052
Scyl3	Rat	endoplasmic reticulum	located_in	IEA	UniProtKB:Q8IZE3 and ensembl:ENSP00000356745	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Scyl3	Rat	endoplasmic reticulum	located_in	ISO	SCYL3 (Homo sapiens) more ...	1624291		RGD	GO_REF:0000052
Scyl3	Rat	Golgi apparatus	located_in	ISO	SCYL3 (Homo sapiens)	1624291	PMID:12651155	RGD	PMID:12651155
Scyl3	Rat	Golgi apparatus	located_in	IEA	UniProtKB:Q8IZE3 and ensembl:ENSP00000356745	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Scyl3	Rat	Golgi apparatus	located_in	ISO	Scyl3 (Mus musculus)	1624291	PMID:29437892	RGD	PMID:29437892
Scyl3	Rat	Golgi apparatus	located_in	IEA	UniProtKB:Q9DBQ7 and ensembl:ENSMUSP00000027876	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Scyl3	Rat	Golgi apparatus	located_in	ISO	SCYL3 (Homo sapiens) more ...	1624291		RGD	GO_REF:0000052
Scyl3	Rat	Golgi membrane	located_in	ISO	Scyl3 (Mus musculus)	1624291	PMID:29437892	RGD	PMID:29437892
Scyl3	Rat	Golgi membrane	located_in	IEA	UniProtKB:Q9DBQ7 and ensembl:ENSMUSP00000027876	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Scyl3	Rat	lamellipodium	located_in	ISO	SCYL3 (Homo sapiens)	1624291	PMID:12651155	RGD	PMID:12651155
Scyl3	Rat	lamellipodium	located_in	IEA	UniProtKB:Q8IZE3 and ensembl:ENSP00000356745	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Scyl3	Rat	ATP binding	enables	IEA	InterPro:IPR000719	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Scyl3	Rat	identical protein binding	enables	ISO	Scyl3 (Mus musculus)	1624291	PR:Q9DBQ7 PMID:29437892	RGD	PMID:29437892
Scyl3	Rat	identical protein binding	enables	IEA	UniProtKB:Q9DBQ7 and ensembl:ENSMUSP00000027876	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Scyl3	Rat	kinase activity	NOT\|enables	ISO	SCYL3 (Homo sapiens)	1624291	PMID:12651155	RGD	PMID:12651155
Scyl3	Rat	protein binding	enables	ISO	SCYL3 (Homo sapiens) and UniProtKB:Q8IZE3-2	1624291	UniProtKB:P60520 more ...	RGD	PMID:32296183 more ...
Scyl3	Rat	protein binding	enables	ISO	Scyl3 (Mus musculus)	1624291	UniProtKB:O75718 more ...	RGD	PMID:29437892
Scyl3	Rat	protein binding	enables	ISO	SCYL3 (Homo sapiens)	1624291	UniProtKB:P15311 more ...	RGD	PMID:12651155 more ...

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12651155	PMID:29437892

Scyl3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	78,811,595 - 78,836,202 (+)	NCBI		GRCr8
mRatBN7.2	13	76,278,428 - 76,303,038 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	76,278,428 - 76,301,716 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	78,896,495 - 78,919,783 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	80,200,830 - 80,224,120 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	77,455,414 - 77,478,704 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	82,230,938 - 82,255,640 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	82,231,030 - 82,254,318 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	87,103,921 - 87,128,610 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	79,687,546 - 79,710,834 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	79,704,000 - 79,724,634 (+)	NCBI
Celera	13	76,012,137 - 76,035,426 (+)	NCBI		Celera
Cytogenetic Map	13	q23	NCBI

SCYL3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	169,849,631 - 169,894,268 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	169,849,631 - 169,894,267 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	169,818,772 - 169,863,037 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	168,088,854 - 168,129,661 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	142,931,586 - 142,972,865 (-)	NCBI		Celera
Cytogenetic Map	1	q24.2	NCBI
HuRef	1	141,044,727 - 141,085,609 (-)	NCBI		HuRef
CHM1_1	1	171,244,369 - 171,285,280 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	169,205,381 - 169,249,993 (-)	NCBI		T2T-CHM13v2.0

Scyl3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	163,756,669 - 163,782,695 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	163,756,669 - 163,782,695 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	163,929,100 - 163,955,126 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	163,929,100 - 163,955,126 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	165,860,195 - 165,885,257 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	165,766,739 - 165,791,801 (+)	NCBI		MGSCv36	mm8
Celera	1	166,370,534 - 166,395,607 (+)	NCBI		Celera
Cytogenetic Map	1	H2.1- H2.2	NCBI
cM Map	1	71.23	NCBI

Scyl3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955462	7,448,893 - 7,476,840 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955462	7,443,841 - 7,477,596 (+)	NCBI	ChiLan1.0	ChiLan1.0

SCYL3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	79,855,292 - 79,912,359 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	79,541,059 - 79,584,939 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	145,299,266 - 145,383,511 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	149,056,553 - 149,100,201 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	149,057,194 - 149,095,445 (-)	Ensembl	panpan1.1		panPan2

SCYL3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	28,751,604 - 28,796,042 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	28,751,707 - 28,795,756 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	28,283,039 - 28,327,661 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	28,553,281 - 28,597,911 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	28,553,472 - 28,597,906 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	28,401,988 - 28,446,611 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	28,437,213 - 28,481,830 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	28,673,927 - 28,718,589 (+)	NCBI		UU_Cfam_GSD_1.0

Scyl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	98,949,491 - 98,982,060 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	16,800,286 - 16,828,194 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	16,796,044 - 16,828,809 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCYL3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	81,134,352 - 81,175,536 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	81,134,035 - 81,175,537 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	88,760,885 - 88,802,370 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCYL3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	59,157,208 - 59,215,074 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	59,156,992 - 59,198,614 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	60,812,493 - 60,873,673 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scyl3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624826	7,749,332 - 7,779,145 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624826	7,748,995 - 7,783,157 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Scyl3
191 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	52
Count of miRNA genes:	38
Interacting mature miRNAs:	50
Transcripts:	ENSRNOT00000003551
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	46088046	91088046	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	34663461	87525369	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	56056920	101056920	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	69060519	77046890	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	69060519	86800898	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	46197976	84753113	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	37415584	80753406	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	69060519	86800898	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	74023918	97213863	Rat
12879441	Bp396	Blood pressure QTL 396			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45699983	90699983	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	65103704	106807694	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	69060519	86800898	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	39754544	84754544	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	34535218	79535218	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	38433408	83433408	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	59492522	77046890	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	66451204	106807694	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	74862117	85581182	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	59874408	85581182	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	31241331	93395974	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	65103704	106807694	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	32284471	77284471	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	37262092	82262092	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	37415584	82415584	Rat
1641901	Alcrsp6	Alcohol response QTL 6			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	13	52362171	97362171	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	61825626	106807694	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	74023918	80753406	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	74862117	101339893	Rat

RH143930

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	76,295,618 - 76,295,765 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	82,248,221 - 82,248,367	NCBI	Rnor6.0
Rnor_5.0	13	87,121,197 - 87,121,343	UniSTS	Rnor5.0
RGSC_v3.4	13	79,704,737 - 79,704,883	UniSTS	RGSC3.4
Celera	13	76,029,329 - 76,029,475	UniSTS
RH 3.4 Map	13	481.8	UniSTS
Cytogenetic Map	13	q22	UniSTS

RH135002

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	76,301,558 - 76,301,765 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	82,254,161 - 82,254,367	NCBI	Rnor6.0
Rnor_5.0	13	87,127,137 - 87,127,343	UniSTS	Rnor5.0
RGSC_v3.4	13	79,710,677 - 79,710,883	UniSTS	RGSC3.4
Celera	13	76,035,269 - 76,035,475	UniSTS
RH 3.4 Map	13	481.8	UniSTS
Cytogenetic Map	13	q22	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001191828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_190778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC124874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003551 ⟹ ENSRNOP00000003461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	76,278,428 - 76,301,716 (+)	Ensembl
Rnor_6.0 Ensembl	13	82,231,030 - 82,254,318 (+)	Ensembl

RefSeq Acc Id:

NM_001191828 ⟹ NP_001178757

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,811,595 - 78,834,883 (+)	NCBI
mRatBN7.2	13	76,278,428 - 76,301,716 (+)	NCBI
Rnor_6.0	13	82,231,030 - 82,254,318 (+)	NCBI
Rnor_5.0	13	87,103,921 - 87,128,610 (+)	NCBI
Celera	13	76,012,137 - 76,035,426 (+)	NCBI

Sequence:

show sequence

CACGCGGAGGTTTCCCGGCAGCCAAAGCCGTCTGCCGGGAGCAGGCGTGAGGCGCAGGCTTCCCTGGCGCACACACCTCAACCCGGCACGCGCCCTCGCAGCACCTGTGCGGCCGCTCTAGCTCGGTT
CCGGGTTCGCGCCTCGGTGGTGGCGTCGGAGGAACTGAAGGCCGGTCTGTTGACCCGCTTCCGGGCCCTTGTAGAGCTGCCTGAGCCCGGGCGTCCGGGGTGACTGTGGGTGGAGGAATCGTGGTCTG
AGCGTCGGAGCCAGCCGCGGGCGAAGAGGGAGCGGAGCCGCCAGCCTCCTCCCGCCGCCCGCAGAGCTGTTTGGATTTGAGGAGGAGCAGCAGCACGGCCTCACGGCAGCAGGGATGGGATCAGAGAA
CAGCGCTTTAAAGAGCTACACACTGGGAGAGCCTCCATATACCCTACCATCTGGACTTGCCGTTTATCCCGCCGTACTGCAGGATGGGAAATGCGCTTCAGTGTTCGTGTACAAGCGAGAAAACGAAG
ACAAGGTTAACAAGGCTGCCAAGCACTTAAAGACACTCCGTCACCCTTGCTTGCTAAGGTTTTTATCTTGTACTGTGGAAGCAGATGGCATTCACCTCGTCACCGAGAGAGTGCAGCCTCTGGAAGTG
GCCTTGGAAACCCTGTCTCCTGCTGAAGTCTGTGCTGGGATCTATGACATATTGCTGGCTCTCGTCTTCCTTCATGAGAGAGGACATCTGACACACAACAATGTCTGCTTATCGTCTGTTTTTGTGAG
TGAGGATGGGCACTGGAAGCTCGGAGGCATGGAGACTGTTTGCAAAGTTTCTCAGGCCACACCAGAGTTTCTCAGGAGTATCCAGTCAGTAAGAGACCCAGCATCCATTCCTCCTGAGGAGATGTCTC
CAGACTTCGCGGCCCTCCCAGAGTCCCACGGACACGCCCGCGATGCCTATGCCTTTGGAGCTTTGGTGGACAGCTTGCTCCCCATCTTTAATGAGCAGGTTTCAGCGGACGTTCTCTCCAGCTTCCTA
CAGACCCTGCACTCAGCTCTGCTCAGTCCCACGCCAACATGTCGGCCAGCACTCAGCACCTTACTGTCCCATGATTTCTTCAGAAATGATTTTCTAGAAGTTGTAAATTTCTTGAAAAGCTTGACATT
AAAGAGTGAAGATGAAAAGACTGAATTTTTCAAATTTCTGTTGGACCGAGTGAGCTGCCTGTCAGAAGAATTAATAGCTTCAAGATTGGTGCCTCTTCTGCTTAACCAGCTGGTGTTCGCTGAGCCAG
TAGCTGTTAAGAGTTTTCTTCCCTATCTACTTGGACCTAAAAAAGAGAATGCACCAGGAGAAACTCCTTGCTTGCTCTCGCCAGCGCTGTTCCAGTCACGAGTGATCCCTGTGCTTCTCCAGTTGTTC
GAGGTCCACGAGGAGCATGTGCGGATGGTGTTACTGTCCCACATTGAGGCCTATGTGGAGCACTTTACTCAGGAACAGCTAAAGAAAGTCATCTTGCCACAGGTACTGCTGGGCCTTCGTGATACCAG
TGATTCCATTGTGGCGATCACTCTCCGGAGCCTGGCAGTGCTGGTGTCTTTACTTGGACCAGAAGTGGTTGTGGGAGGACAAAGAAGTAAGATCTTTAAGCGCACTGCTCCAAGCTTTACCAAAACTA
GTGACCTTTCCCCTGAAGGTTCCCCCATGCATGTTGTGTGCAGCCAGCAGAGTCGGATCTCGAAAGTCTTGGAGAACCCTTCCTCTAATGTATTCCCTAAATGGTTTTCTGGCAACATGTCCATCAAT
AGCAGGAAGCACATACAGGAAGAATATTACAGTACTCTTTTACAGACAGGTGATCAGTTTTCTCACACTATTAAATTCCCTATGAATGGACTCTCAGATGTGAAGAACACTTCAGAGGACAATGGAAG
CTTCCCTGCAGGGTCTAATAAGCCTGAAGAGTGGCCTGACTGGAGTGAGCCTGAGGAGCCTGAGCACCAGACGACCAGTATTCACATATGGCCCCAAGAACCCGGTGACGTGGCAGAGACCCAGCACA
CAAGTCTGAGCGCACAGGAGTTGTCCTGGGATGACTGTGAGTCTAGCTTTGGCCCTGAAGTCAACACAGCAGCCAGAGCCTCTGCTCCCAGGCCTGTTACCTCAGGGGAACAGATGCCCACTGCAGCT
TTGCTTCCTCTCACTGAAGAGTCAAAGCCTGTGCAATCCAGGCCTTCCTCAAAGACCAGTCATAGACAGCAAGAGGAAGTCAAAGCACCCCAAATGTCACAAGAAAGACCCCCACAAGTTCGATCAGA
ACTTGGTTTAGGAGAAGAGTTTACCATTCAAGTGAAAAAGAAACCAGCACAAGATCCTGAGTTAGACTGGTTTGCAGATATGGTCCCAGAAATTAAGCCTTCAGGTACTTTTCTTATCTTGCCTGAAC
TAAGGACAGAAGGGATGGTTCCTGACAAAGATACTGTCTCACCAGTGATGCAGTTTTCCTCAAAGTTTGCTGCAACAGAAATGACCGAGGGAGAGGCTGAAGGCTGGGAAGGAGAAGAGCTAGCCTGG
GAAGATGACAACTGGTGACAATAAGGACGAACTTAGACTTCAGGAAGAATTCTAAAAGAATTAATACCTCAAAGGAAGCTGCATGGACATAAAACCCCAAAGCAGCTTGAGTTCCCCATGCCTGGAGC
TCTTTTTTGCAGTCTGTGCCAACTCAAGCAGAGACCAAGCTCAGGTTGCTGACTAAGCCCTAGGTGGCAAAAGGCTCTCGGTGCCAGATTCCAGGAGAGAGTGCCTGTGCGCTGACTGCGGCCAGTTT
CCATACAGGCAAATAGCTAAAGAAGTGCTTTTTTCCAGGACAATTCTGGAAGTAAAGAAATAAAAAAATTGAAGCTGGTAAGCTTAATTTTGTGCCATTTCTTTACAAGTAAAAGAGTAAGCTCTATT
ATGAAATAACAAACTGGGGGAA

hide sequence

RefSeq Acc Id:

XM_006250176 ⟹ XP_006250238

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,815,548 - 78,836,202 (+)	NCBI
mRatBN7.2	13	76,282,381 - 76,303,038 (+)	NCBI
Rnor_6.0	13	82,235,033 - 82,255,640 (+)	NCBI
Rnor_5.0	13	87,103,921 - 87,128,610 (+)	NCBI

Sequence:

show sequence

GTTTATCCCGCCGTACTGCAGGATGGGAAATGCGCTTCAGTGTTCGTGTACAAGCGAGAAAACG
AAGACAAGGTTAACAAGGCTGCCAAGATGGCATTCACCTCGTCACCGAGAGAGTGCAGCCTCTGGAAGTGGCCTTGGAAACCCTGTCTCCTGCTGAAGTCTGTGCTGGGATCTATGACATATTGCTGG
CTCTCGTCTTCCTTCATGAGAGAGGACATCTGACACACAACAATGTCTGCTTATCGTCTGTTTTTGTGAGTGAGGATGGGCACTGGAAGCTCGGAGGCATGGAGACTGTTTGCAAAGTTTCTCAGGCC
ACACCAGAGGAGTATCCAGTCAGTAAGAGACCCAGCATCCATTCCTCCTGAGGAGATGTCTCCAGACTTCGCGGCCCTCCCAGAGTCCCACGGACACGCCCGCGATGCCTATGCCTTTGGAGCTTTGG
TGGACAGCTTGCTCCCCATCTTTAATGAGCAGGTTTCAGCGGACGTTCTCTCCAGCTTCCTACAGACCCTGCACTCAGCTCTGCTCAGTCCCACGCCAACATGTCGGCCAGCACTCAGCACCTTACTG
TCCCATGATTTCTTCAGAAATGATTTTCTAGAAGTTGTAAATTTCTTGAAAAGCTTGACATTAAAGAGTGAAGATGAAAAGACTGAATTTTTCAAATTTCTGTTGGACCGAGTGAGCTGCCTGTCAGA
AGAATTAATAGCTTCAAGATTGGTGCCTCTTCTGCTTAACCAGCTGGTGTTCGCTGAGCCAGTAGCTGTTAAGAGTTTTCTTCCCTATCTACTTGGACCTAAAAAAGAGAATGCACCAGGAGAAACTC
CTTGCTTGCTCTCGCCAGCGCTGTTCCAGTCACGAGTGATCCCTGTGCTTCTCCAGTTGTTCGAGGTCCACGAGGAGCATGTGCGGATGGTGTTACTGTCCCACATTGAGGCCTATGTGGAGCACTTT
ACTCAGGAACAGCTAAAGAAAGTCATCTTGCCACAGGTACTGCTGGGCCTTCGTGATACCAGTGATTCCATTGTGGCGATCACTCTCCGGAGCCTGGCAGTGCTGGTGTCTTTACTTGGACCAGAAGT
GGTTGTGGGAGGACAAAGAAGTAAGATCTTTAAGCGCACTGCTCCAAGCTTTACCAAAACTAGTGACCTTTCCCCTGAAGGTTCCCCCATGCATGTTGTGTGCAGCCAGCAGAGTCGGATCTCGAAAG
TCTTGGAGAACCCTTCCTCTAATGTATTCCCTAAATGGTTTTCTGGCAACATGTCCATCAATAGCAGGAAGCACATACAGGAAGAATATTACAGTACTCTTTTACAGACAGGTGATCAGTTTTCTCAC
ACTATTAAATTCCCTATGAATGGACTCTCAGATGTGAAGAACACTTCAGAGGACAATGGAAGCTTCCCTGCAGGGTCTAATAAGCCTGAAGAGTGGCCTGACTGGAGTGAGCCTGAGGAGCCTGAGCA
CCAGACGACCAGTATTCACATATGGCCCCAAGAACCCGGTGACGTGGCAGAGACCCAGCACACAAGTCTGAGCGCACAGGAGTTGTCCTGGGATGACTGTGAGTCTAGCTTTGGCCCTGAAGTCAACA
CAGCAGCCAGAGCCTCTGCTCCCAGGCCTGTTACCTCAGGGGAACAGATGCCCACTGCAGCTTTGCTTCCTCTCACTGAAGAGTCAAAGCCTGTGCAATCCAGGCCTTCCTCAAAGACCAGTCATAGA
CAGCAAGAGGAAGTCAAAGCACCCCAAATGTCACAAGAAAGACCCCCACAAGTTCGATCAGAACTTGGTTTAGGAGAAGAGTTTACCATTCAAGTGAAAAAGAAACCAGCACAAGATCCTGAGTTAGA
CTGGTTTGCAGATATGGTCCCAGAAATTAAGCCTTCAGGTACTTTTCTTATCTTGCCTGAACTAAGGACAGAAGGGATGGTTCCTGACAAAGATACTGTCTCACCAGTGATGCAGTTTTCCTCAAAGT
TTGCTGCAACAGAAATGACCGAGGGAGAGGCTGAAGGCTGGGAAGGAGAAGAGCTAGCCTGGGAAGATGACAACTGGTGACAATAAGGACGAACTTAGACTTCAGGAAGAATTCTAAAAGAATTAATA
CCTCAAAGGAAGCTGCATGGACATAAAACCCCAAAGCAGCTTGAGTTCCCCATGCCTGGAGCTCTTTTTTGCAGTCTGTGCCAACTCAAGCAGAGACCAAGCTCAGGTTGCTGACTAAGCCCTAGGTG
GCAAAAGGCTCTCGGTGCCAGATTCCAGGAGAGAGTGCCTGTGCGCTGACTGCGGCCAGTTTCCATACAGGCAAATAGCTAAAGAAGTGCTTTTTTCCAGGACAATTCTGGAAGTAAAGAAATAAAAA
AATTGAAGCTGGTAAGCTTAATTTTGTGCCATTTCTTTACAAGTAAAAGAGTAAGCTCTATTATGAAATAACAAACTGGGGGAAAAAAACTAGCTGTAAATTATAACTTCCAACTGCTAAGGCTTCTT
AGGCAGCTTATTTGTTTACAGTTTGTCATCTGAGAAAAGAAAGGTCTCTCCCCTTTGGACCTGAGCAGTTACTGTTTCACCTGTATTACACTGTACCAAAGCTCTCAATGAGAAACACCCCACCCCAT
TGCTCTCTATGTCAAATAAAGATTATTTTCACATTTACAAAAGCTCTTTTATGTGCTATGAAAATATACAAGCATAATTTATATTCACAATTTCATTTACAAAAACATCCAGGTAAGGCATTTGAAGA
GTCAAACCCAGTTCTGTCCGATACACAGTCTATTCAACCTCTAAGCACACAGCATTTTAGCTTCTCAATCCTTTCTTGCAGTGCCCCCAGTTCCGACAGCAGCCAGGCTGGAGCACGAGAATGTTTGA
GTAAAGCCTCAGTTGTCTCCAAAGCCCTTGTTGCAGTCTGAAATGCTGATCTGTATTCTTCTTCAAGGAGCAACTCCTGGCGGGCTCTCTTTGTGCAAGGCTGGAAAATAAAGAAAACATGAGTCAAG
TGCTGCATACTCCTTCTCAGAACAGCGGAGAGAGGCGGTAGTCACAGGGCCACAGAGGGCAGCCTCCCATTCTTATCCTTATCAGTAATGACCCTAACGTGCTAACTGCTTTCCATGTCCTAATGGAA
ACGTGGCAGACAAGCACAATCACCCTGTGTTAGGGTTCCCAATGATAAATGCCGTCTTGCCTAACAGCTATCCATGAATAGTCTTTAAAACGGCATAAGGAAATAAAATGTGAATTTCCTAATAAGTT
CGTAATCACTGAGAACCATAATAGTTTTCAGTGTGCTTTTGGAGCTAGCGAAGGGAAACAGGCTCAAAACGTCTTGCATAGAGGGACAAGAGGAACTGAGGTGAAACCCAGACATGTCTAATAATTGG
TTTTTCAAAGGGAAGTCACAATTTAAATTCACAGGGCTCACAAACACCATGATTTAAGGTGAACTTTATATACATTCAGGCCTACAGCTACATCTAAGAAAACATTCCTATTGCACTGTAAACCTACA
ACACTGCTTTTCTTATGGCCCTACAATTCCCAATTACCTATGTTCAAAACACAATTCTGAATGTATGTAGTGTCAAATTTCTGCCAATTAATAAGTACACGTGATATTTGAGAAAAGTGATTATAAGG
CTAGTTGGACAATGAGATGAACTGAACAAACTGATATCTGTGGGTCAGAAAATGCATTTATGTCATCGTTGGTACAATATGCAATTACCAATAATAAAAGTATATTTGATATAAAGGTTACAACTA

hide sequence

RefSeq Acc Id:

XM_008769661 ⟹ XP_008767883

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,811,776 - 78,836,202 (+)	NCBI
mRatBN7.2	13	76,278,608 - 76,303,032 (+)	NCBI
Rnor_6.0	13	82,230,938 - 82,255,640 (+)	NCBI

Sequence:

show sequence

CATTTTGGCTTCGGGCGGAAATGAACTCAAAAGTAGCCGGTTAAAAACCCAAACATTAAAACCAGGACGCCCCTGCAGTCGAGCTGGAAATACACGCGGAGGTTTCCCGGCAGCCAAAGCCGTCTGCC
GGGAGCAGGCGTGAGGCGCAGGCTTCCCTGGCGCACACACCTCAACCCGGCACGCGCCCTCGCAGCACCTGTGCGGCCGCTCTAGCTCGGTTCCGGGTTCGCGCCTCGGTGGTGGCGTCGGAGGAACT
GAAGGCCGGTCTGTTGACCCGCTTCCGGGCCCTTGTAGAGCTGCCTGAGCCCGGGCGTCCGGGGTGACTGTGGGTGGAGGAATCGTGGTCTGAGCGTCGGAGCCAGCCGCGGGCGAAGAGGGAGCGGA
GCCGCCAGCCTCCTCCCGCCGCCCGCAGAGCTGTTTGGATTTGAGGAGGAGCAGCAGCACGGCCTCACGGCAGCAGGGATGGGATCAGAGAACAGCGCTTTAAAGAGCTACACACTGGGAGAGCCTCC
ATATACCCTACCATCTGGACTTGCCGTTTATCCCGCCGTACTGCAGGATGGGAAATGCGCTTCAGTGTTCGTGTACAAGCGAGAAAACGAAGACAAGGTTAACAAGGCTGCCAAGCACTTAAAGACAC
TCCGTCACCCTTGCTTGCTAAGGTTTTTATCTTGTACTGTGGAAGCAGATGGCATTCACCTCGTCACCGAGAGAGTGCAGCCTCTGGAAGTGGCCTTGGAAACCCTGTCTCCTGCTGAAGTCTGTGCT
GGGATCTATGACATATTGCTGGCTCTCGTCTTCCTTCATGAGAGAGGACATCTGACACACAACAATGTCTGCTTATCGTCTGTTTTTGTGAGTGAGGATGGGCACTGGAAGCTCGGAGGCATGGAGAC
TGTTTGCAAAGTTTCTCAGGCCACACCAGAGTTTCTCAGGAGTATCCAGTCAGTAAGAGACCCAGCATCCATTCCTCCTGAGGAGATGTCTCCAGACTTCGCGGCCCTCCCAGAGTCCCACGGACACG
CCCGCGATGCCTATGCCTTTGGAGCTTTGGTGGACAGCTTGCTCCCCATCTTTAATGAGCAGGTTTCAGCGGACGTTCTCTCCAGCTTCCTACAGACCCTGCACTCAGCTCTGCTCAGTCCCACGCCA
ACATGTCGGCCAGCACTCAGCACCTTACTGTCCCATGATTTCTTCAGAAATGATTTTCTAGAAGTTGTAAATTTCTTGAAAAGCTTGACATTAAAGAGTGAAGATGAAAAGACTGAATTTTTCAAATT
TCTGTTGGACCGAGTGAGCTGCCTGTCAGAAGAATTAATAGCTTCAAGATTGGTGCCTCTTCTGCTTAACCAGCTGGTGTTCGCTGAGCCAGTAGCTGTTAAGAGTTTTCTTCCCTATCTACTTGGAC
CTAAAAAAGAGAATGCACCAGGAGAAACTCCTTGCTTGCTCTCGCCAGCGCTGTTCCAGTCACGAGTGATCCCTGTGCTTCTCCAGTTGTTCGAGGTCCACGAGGAGCATGTGCGGATGGTGTTACTG
TCCCACATTGAGGCCTATGTGGAGCACTTTACTCAGGAACAGCTAAAGAAAGTCATCTTGCCACAGGTACTGCTGGGCCTTCGTGATACCAGTGATTCCATTGTGGCGATCACTCTCCGGAGCCTGGC
AGTGCTGGTGTCTTTACTTGGACCAGAAGTGGTTGTGGGAGGACAAAGAAGTAAGATCTTTAAGCGCACTGCTCCAAGCTTTACCAAAACTAGTGACCTTTCCCCTGAAGGTTCCCCCATGCATGTTG
TGTGCAGCCAGCAGAGTCGGATCTCGAAAGTCTTGGAGAACCCTTCCTCTAATGTATTCCCTAAATGGTTTTCTGGCAACATGTCCATCAATAGCAGGAAGCACATACAGGAAGAATATTACAGTACT
CTTTTACAGACAGATGTGAAGAACACTTCAGAGGACAATGGAAGCTTCCCTGCAGGGTCTAATAAGCCTGAAGAGTGGCCTGACTGGAGTGAGCCTGAGGAGCCTGAGCACCAGACGACCAGTATTCA
CATATGGCCCCAAGAACCCGGTGACGTGGCAGAGACCCAGCACACAAGTCTGAGCGCACAGGAGTTGTCCTGGGATGACTGTGAGTCTAGCTTTGGCCCTGAAGTCAACACAGCAGCCAGAGCCTCTG
CTCCCAGGCCTGTTACCTCAGGGGAACAGATGCCCACTGCAGCTTTGCTTCCTCTCACTGAAGAGTCAAAGCCTGTGCAATCCAGGCCTTCCTCAAAGACCAGTCATAGACAGCAAGAGGAAGTCAAA
GCACCCCAAATGTCACAAGAAAGACCCCCACAAGTTCGATCAGAACTTGGTTTAGGAGAAGAGTTTACCATTCAAGTGAAAAAGAAACCAGCACAAGATCCTGAGTTAGACTGGTTTGCAGATATGGT
CCCAGAAATTAAGCCTTCAGGTACTTTTCTTATCTTGCCTGAACTAAGGACAGAAGGGATGGTTCCTGACAAAGATACTGTCTCACCAGTGATGCAGTTTTCCTCAAAGTTTGCTGCAACAGAAATGA
CCGAGGGAGAGGCTGAAGGCTGGGAAGGAGAAGAGCTAGCCTGGGAAGATGACAACTGGTGACAATAAGGACGAACTTAGACTTCAGGAAGAATTCTAAAAGAATTAATACCTCAAAGGAAGCTGCAT
GGACATAAAACCCCAAAGCAGCTTGAGTTCCCCATGCCTGGAGCTCTTTTTTGCAGTCTGTGCCAACTCAAGCAGAGACCAAGCTCAGGTTGCTGACTAAGCCCTAGGTGGCAAAAGGCTCTCGGTGC
CAGATTCCAGGAGAGAGTGCCTGTGCGCTGACTGCGGCCAGTTTCCATACAGGCAAATAGCTAAAGAAGTGCTTTTTTCCAGGACAATTCTGGAAGTAAAGAAATAAAAAAATTGAAGCTGGTAAGCT
TAATTTTGTGCCATTTCTTTACAAGTAAAAGAGTAAGCTCTATTATGAAATAACAAACTGGGGGAAAAAAACTAGCTGTAAATTATAACTTCCAACTGCTAAGGCTTCTTAGGCAGCTTATTTGTTTA
CAGTTTGTCATCTGAGAAAAGAAAGGTCTCTCCCCTTTGGACCTGAGCAGTTACTGTTTCACCTGTATTACACTGTACCAAAGCTCTCAATGAGAAACACCCCACCCCATTGCTCTCTATGTCAAATA
AAGATTATTTTCACATTTACAAAAGCTCTTTTATGTGCTATGAAAATATACAAGCATAATTTATATTCACAATTTCATTTACAAAAACATCCAGGTAAGGCATTTGAAGAGTCAAACCCAGTTCTGTC
CGATACACAGTCTATTCAACCTCTAAGCACACAGCATTTTAGCTTCTCAATCCTTTCTTGCAGTGCCCCCAGTTCCGACAGCAGCCAGGCTGGAGCACGAGAATGTTTGAGTAAAGCCTCAGTTGTCT
CCAAAGCCCTTGTTGCAGTCTGAAATGCTGATCTGTATTCTTCTTCAAGGAGCAACTCCTGGCGGGCTCTCTTTGTGCAAGGCTGGAAAATAAAGAAAACATGAGTCAAGTGCTGCATACTCCTTCTC
AGAACAGCGGAGAGAGGCGGTAGTCACAGGGCCACAGAGGGCAGCCTCCCATTCTTATCCTTATCAGTAATGACCCTAACGTGCTAACTGCTTTCCATGTCCTAATGGAAACGTGGCAGACAAGCACA
ATCACCCTGTGTTAGGGTTCCCAATGATAAATGCCGTCTTGCCTAACAGCTATCCATGAATAGTCTTTAAAACGGCATAAGGAAATAAAATGTGAATTTCCTAATAAGTTCGTAATCACTGAGAACCA
TAATAGTTTTCAGTGTGCTTTTGGAGCTAGCGAAGGGAAACAGGCTCAAAACGTCTTGCATAGAGGGACAAGAGGAACTGAGGTGAAACCCAGACATGTCTAATAATTGGTTTTTCAAAGGGAAGTCA
CAATTTAAATTCACAGGGCTCACAAACACCATGATTTAAGGTGAACTTTATATACATTCAGGCCTACAGCTACATCTAAGAAAACATTCCTATTGCACTGTAAACCTACAACACTGCTTTTCTTATGG
CCCTACAATTCCCAATTACCTATGTTCAAAACACAATTCTGAATGTATGTAGTGTCAAATTTCTGCCAATTAATAAGTACACGTGATATTTGAGAAAAGTGATTATAAGGCTAGTTGGACAATGAGAT
GAACTGAACAAACTGATATCTGTGGGTCAGAAAATGCATTTATGTCATCGTTGGTACAATATGCAATTACCAATAATAAAAGTATATTTGATATAAAGGTTACAACTA

hide sequence

RefSeq Acc Id:

XM_039090910 ⟹ XP_038946838

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,815,679 - 78,836,202 (+)	NCBI
mRatBN7.2	13	76,282,514 - 76,303,038 (+)	NCBI

RefSeq Acc Id:

XM_063272491 ⟹ XP_063128561

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,812,304 - 78,836,202 (+)	NCBI

RefSeq Acc Id:

XR_005492254

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,811,776 - 78,836,202 (+)	NCBI
mRatBN7.2	13	76,278,608 - 76,303,038 (+)	NCBI

RefSeq Acc Id:

XR_005492255

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,811,776 - 78,832,018 (+)	NCBI
mRatBN7.2	13	76,278,608 - 76,300,144 (+)	NCBI


Protein RefSeqs	NP_001178757	(Get FASTA)	NCBI Sequence Viewer
	NP_001416656	(Get FASTA)	NCBI Sequence Viewer
	NP_001416657	(Get FASTA)	NCBI Sequence Viewer
	XP_006250238	(Get FASTA)	NCBI Sequence Viewer
	XP_008767883	(Get FASTA)	NCBI Sequence Viewer
	XP_038946838	(Get FASTA)	NCBI Sequence Viewer
	XP_063128561	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM09370	(Get FASTA)	NCBI Sequence Viewer
	EDM09371	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003461
	ENSRNOP00000003461.4

RefSeq Acc Id:

NP_001178757 ⟸ NM_001191828

- UniProtKB:

D3ZK09 (UniProtKB/TrEMBL), A6IDC6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGSENSALKSYTLGEPPYTLPSGLAVYPAVLQDGKCASVFVYKRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSPAEVCAGIYDILLALVFLHERGHLTHNNVCLS
SVFVSEDGHWKLGGMETVCKVSQATPEFLRSIQSVRDPASIPPEEMSPDFAALPESHGHARDAYAFGALVDSLLPIFNEQVSADVLSSFLQTLHSALLSPTPTCRPALSTLLSHDFFRNDFLEVVNFL
KSLTLKSEDEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKENAPGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLG
LRDTSDSIVAITLRSLAVLVSLLGPEVVVGGQRSKIFKRTAPSFTKTSDLSPEGSPMHVVCSQQSRISKVLENPSSNVFPKWFSGNMSINSRKHIQEEYYSTLLQTGDQFSHTIKFPMNGLSDVKNTS
EDNGSFPAGSNKPEEWPDWSEPEEPEHQTTSIHIWPQEPGDVAETQHTSLSAQELSWDDCESSFGPEVNTAARASAPRPVTSGEQMPTAALLPLTEESKPVQSRPSSKTSHRQQEEVKAPQMSQERPP
QVRSELGLGEEFTIQVKKKPAQDPELDWFADMVPEIKPSGTFLILPELRTEGMVPDKDTVSPVMQFSSKFAATEMTEGEAEGWEGEELAWEDDNW

hide sequence

RefSeq Acc Id:

XP_006250238 ⟸ XM_006250176

- Peptide Label:

isoform X3

- Sequence:

show sequence

MGTGSSEAWRLFAKFLRPHQRSIQSVRDPASIPPEEMSPDFAALPESHGHARDAYAFGALVDSLLPIFNEQVSADVLSSFLQTLHSALLSPTPTCRPALSTLLSHDFFRNDFLEVVNFLKSLTLKSED
EKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKENAPGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIV
AITLRSLAVLVSLLGPEVVVGGQRSKIFKRTAPSFTKTSDLSPEGSPMHVVCSQQSRISKVLENPSSNVFPKWFSGNMSINSRKHIQEEYYSTLLQTGDQFSHTIKFPMNGLSDVKNTSEDNGSFPAG
SNKPEEWPDWSEPEEPEHQTTSIHIWPQEPGDVAETQHTSLSAQELSWDDCESSFGPEVNTAARASAPRPVTSGEQMPTAALLPLTEESKPVQSRPSSKTSHRQQEEVKAPQMSQERPPQVRSELGLG
EEFTIQVKKKPAQDPELDWFADMVPEIKPSGTFLILPELRTEGMVPDKDTVSPVMQFSSKFAATEMTEGEAEGWEGEELAWEDDNW

hide sequence

RefSeq Acc Id:

XP_008767883 ⟸ XM_008769661

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGSENSALKSYTLGEPPYTLPSGLAVYPAVLQDGKCASVFVYKRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSPAEVCAGIYDILLALVFLHERGHLTHNNVCLS
SVFVSEDGHWKLGGMETVCKVSQATPEFLRSIQSVRDPASIPPEEMSPDFAALPESHGHARDAYAFGALVDSLLPIFNEQVSADVLSSFLQTLHSALLSPTPTCRPALSTLLSHDFFRNDFLEVVNFL
KSLTLKSEDEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKENAPGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLG
LRDTSDSIVAITLRSLAVLVSLLGPEVVVGGQRSKIFKRTAPSFTKTSDLSPEGSPMHVVCSQQSRISKVLENPSSNVFPKWFSGNMSINSRKHIQEEYYSTLLQTDVKNTSEDNGSFPAGSNKPEEW
PDWSEPEEPEHQTTSIHIWPQEPGDVAETQHTSLSAQELSWDDCESSFGPEVNTAARASAPRPVTSGEQMPTAALLPLTEESKPVQSRPSSKTSHRQQEEVKAPQMSQERPPQVRSELGLGEEFTIQV
KKKPAQDPELDWFADMVPEIKPSGTFLILPELRTEGMVPDKDTVSPVMQFSSKFAATEMTEGEAEGWEGEELAWEDDNW

hide sequence

Ensembl Acc Id:

ENSRNOP00000003461 ⟸ ENSRNOT00000003551

RefSeq Acc Id:	XP_038946838 ⟸ XM_039090910
- Peptide Label:	isoform X4

Protein Domains

Protein kinase

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZK09-F1-model_v2	AlphaFold	D3ZK09	1-735	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-17620	BioCyc
Ensembl Genes	ENSRNOG00000025318	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003551	ENTREZGENE
	ENSRNOT00000003551.7	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
	Phosphorylase Kinase, domain 1	UniProtKB/TrEMBL
	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	CIK-Related_Protein	UniProtKB/TrEMBL
	HEAT_type_2	UniProtKB/TrEMBL
	Kinase-like_dom	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
KEGG Report	rno:360866	UniProtKB/TrEMBL
NCBI Gene	360866	ENTREZGENE
PANTHER	PROTEIN-ASSOCIATING WITH THE CARBOXYL-TERMINAL DOMAIN OF EZRIN	UniProtKB/TrEMBL
	SCY1-RELATED S/T PROTEIN KINASE-LIKE	UniProtKB/TrEMBL
PhenoGen	Scyl3	PhenoGen
PROSITE	HEAT_REPEAT	UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000025318	RatGTEx
SMART	S_TKc	UniProtKB/TrEMBL
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
	Kinase_like	UniProtKB/TrEMBL
UniProt	A6IDC6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZK09	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-01	Scyl3	SCY1 like pseudokinase 3	Scyl3	SCY1-like, kinase-like 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-30	Scyl3	SCY1-like, kinase-like 3	Scyl3	SCY1-like 3 (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-26	Scyl3	SCY1-like 3 (S. cerevisiae)	RGD1308992_predicted	similar to ezrin-binding partner PACE-1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1308992_predicted	similar to ezrin-binding partner PACE-1 (predicted)	LOC360866_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360866_predicted	similar to ezrin-binding partner PACE-1 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar