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Gene: Nfam1 (NFAT activating protein with ITAM motif 1) Rattus norvegicus

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Symbol:

Nfam1

Name:

NFAT activating protein with ITAM motif 1

RGD ID:

1308316

Description:

Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in B cell differentiation; B cell receptor signaling pathway; and calcineurin-NFAT signaling cascade. Predicted to act upstream of or within regulation of B cell differentiation. Predicted to be located in cell surface and membrane. Predicted to be active in membrane raft. Orthologous to human NFAM1 (NFAT activating protein with ITAM motif 1); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC362966; Nfat activating molecule with ITAM motif 1; NFAT activation molecule 1; RGD1308316; similar to NFAT activation molecule 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	116,019,383 - 116,055,628 (-)	NCBI		GRCr8
mRatBN7.2	7	114,139,318 - 114,175,395 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	114,139,345 - 114,175,442 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	7	123,856,718 - 123,893,790 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	123,856,567 - 123,892,429 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	123,840,130 - 123,878,194 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	121,019,642 - 121,038,935 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	121,053,871 - 121,110,415 (-)	NCBI
Celera	7	110,453,045 - 110,489,346 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nfam1	Rat	common variable immunodeficiency 4		ISO	NFAM1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Immunodeficiency more ...	ClinVar	PMID:28492532
Nfam1	Rat	Developmental Delay with Variable Intellectual Impairment and Behavioral Abnormalities		ISO	NFAM1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental delay with variable intellectual impairment and behavioral abnormalities	ClinVar	PMID:30819258 and PMID:31690835
Nfam1	Rat	intellectual disability		ISO	NFAM1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nfam1	Rat	1,2-dimethylhydrazine	increases expression	ISO	Nfam1 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of NFAM1 mRNA	CTD	PMID:22206623
Nfam1	Rat	17beta-estradiol	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of NFAM1 mRNA	CTD	PMID:32741896
Nfam1	Rat	17beta-estradiol	decreases expression	ISO	Nfam1 (Mus musculus)	6480464	Estradiol results in decreased expression of NFAM1 mRNA	CTD	PMID:39298647
Nfam1	Rat	17beta-estradiol 3-benzoate	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of NFAM1 mRNA	CTD	PMID:32741896
Nfam1	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Nfam1 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of NFAM1 mRNA	CTD	PMID:28922406
Nfam1	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of NFAM1 mRNA	CTD	PMID:34747641
Nfam1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of NFAM1 mRNA	CTD	PMID:32109520
Nfam1	Rat	2,4-dibromophenyl 2,4,5-tribromophenyl ether	affects expression	ISO	Nfam1 (Mus musculus)	6480464	2 more ...	CTD	PMID:38648751
Nfam1	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	Nfam1 (Mus musculus)	6480464	bisphenol S results in decreased expression of NFAM1 mRNA	CTD	PMID:39298647
Nfam1	Rat	4,4'-sulfonyldiphenol	increases methylation	ISO	NFAM1 (Homo sapiens)	6480464	bisphenol S results in increased methylation of NFAM1 gene	CTD	PMID:31601247
Nfam1	Rat	4-hydroxynon-2-enal	increases expression	ISO	Nfam1 (Mus musculus)	6480464	4-hydroxy-2-nonenal results in increased expression of NFAM1 mRNA	CTD	PMID:19191707
Nfam1	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of NFAM1 mRNA	CTD	PMID:24780913
Nfam1	Rat	aflatoxin B1	decreases methylation	ISO	NFAM1 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of NFAM1 intron	CTD	PMID:30157460
Nfam1	Rat	Aflatoxin B2 alpha	decreases methylation	ISO	NFAM1 (Homo sapiens)	6480464	aflatoxin B2 results in decreased methylation of NFAM1 intron	CTD	PMID:30157460
Nfam1	Rat	all-trans-retinoic acid	increases expression	ISO	NFAM1 (Homo sapiens)	6480464	Tretinoin results in increased expression of NFAM1 mRNA	CTD	PMID:33167477
Nfam1	Rat	antirheumatic drug	decreases expression	ISO	NFAM1 (Homo sapiens)	6480464	Antirheumatic Agents results in decreased expression of NFAM1 mRNA	CTD	PMID:24449571
Nfam1	Rat	atrazine	increases expression	ISO	NFAM1 (Homo sapiens)	6480464	Atrazine results in increased expression of NFAM1 mRNA	CTD	PMID:22378314
Nfam1	Rat	benzo[a]pyrene	affects methylation	ISO	NFAM1 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of NFAM1 intron and Benzo(a)pyrene affects the methylation of NFAM1 promoter	CTD	PMID:27901495 and PMID:30157460
Nfam1	Rat	benzo[e]pyrene	affects methylation	ISO	NFAM1 (Homo sapiens)	6480464	benzo(e)pyrene affects the methylation of NFAM1 intron	CTD	PMID:30157460
Nfam1	Rat	bisphenol A	decreases methylation	ISO	NFAM1 (Homo sapiens)	6480464	bisphenol A results in decreased methylation of NFAM1 gene	CTD	PMID:31601247
Nfam1	Rat	bisphenol A	increases expression	ISO	Nfam1 (Mus musculus)	6480464	bisphenol A results in increased expression of NFAM1 mRNA	CTD	PMID:32156529
Nfam1	Rat	cannabidiol	decreases expression	ISO	Nfam1 (Mus musculus)	6480464	Cannabidiol results in decreased expression of NFAM1 mRNA	CTD	PMID:21542829
Nfam1	Rat	carbon nanotube	increases expression	ISO	Nfam1 (Mus musculus)	6480464	Nanotubes and Carbon analog results in increased expression of NFAM1 mRNA	CTD	PMID:25554681
Nfam1	Rat	ethylparaben	decreases expression	ISO	NFAM1 (Homo sapiens)	6480464	ethyl-p-hydroxybenzoate results in decreased expression of NFAM1 mRNA	CTD	PMID:37690743
Nfam1	Rat	fonofos	increases methylation	ISO	NFAM1 (Homo sapiens)	6480464	Fonofos results in increased methylation of NFAM1 promoter	CTD	PMID:22847954
Nfam1	Rat	lipopolysaccharide	decreases expression	ISO	Nfam1 (Mus musculus)	6480464	Lipopolysaccharides results in decreased expression of NFAM1 mRNA	CTD	PMID:26582142
Nfam1	Rat	lipopolysaccharide	multiple interactions	ISO	NFAM1 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in decreased expression of NFAM1 mRNA	CTD	PMID:35811015
Nfam1	Rat	methapyrilene	affects methylation	ISO	NFAM1 (Homo sapiens)	6480464	Methapyrilene affects the methylation of NFAM1 intron	CTD	PMID:30157460
Nfam1	Rat	N,N-diethyl-m-toluamide	multiple interactions	EXP		6480464	[Permethrin co-treated with DEET] results in decreased methylation of NFAM1 gene	CTD	PMID:33148267
Nfam1	Rat	nitrofen	increases expression	EXP		6480464	nitrofen results in increased expression of NFAM1 mRNA	CTD	PMID:33484710
Nfam1	Rat	parathion	increases methylation	ISO	NFAM1 (Homo sapiens)	6480464	Parathion results in increased methylation of NFAM1 promoter	CTD	PMID:22847954
Nfam1	Rat	perfluorooctanoic acid	increases expression	ISO	NFAM1 (Homo sapiens)	6480464	perfluorooctanoic acid results in increased expression of NFAM1 mRNA	CTD	PMID:36326898
Nfam1	Rat	permethrin	multiple interactions	EXP		6480464	[Permethrin co-treated with DEET] results in decreased methylation of NFAM1 gene	CTD	PMID:33148267
Nfam1	Rat	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	NFAM1 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in decreased expression of NFAM1 mRNA	CTD	PMID:35811015
Nfam1	Rat	silicon dioxide	decreases expression	ISO	Nfam1 (Mus musculus)	6480464	Silicon Dioxide results in decreased expression of NFAM1 mRNA	CTD	PMID:19073995
Nfam1	Rat	terbufos	increases methylation	ISO	NFAM1 (Homo sapiens)	6480464	terbufos results in increased methylation of NFAM1 promoter	CTD	PMID:22847954
Nfam1	Rat	testosterone	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of NFAM1 mRNA	CTD	PMID:32741896
Nfam1	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of NFAM1 mRNA	CTD	PMID:34492290
Nfam1	Rat	triclosan	decreases expression	ISO	NFAM1 (Homo sapiens)	6480464	Triclosan results in decreased expression of NFAM1 mRNA	CTD	PMID:30510588
Nfam1	Rat	triclosan	increases methylation	ISO	NFAM1 (Homo sapiens)	6480464	Triclosan results in increased methylation of NFAM1 gene	CTD	PMID:34523531
Nfam1	Rat	triphenyl phosphate	affects expression	ISO	NFAM1 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of NFAM1 mRNA	CTD	PMID:37042841
Nfam1	Rat	triptonide	increases expression	ISO	Nfam1 (Mus musculus)	6480464	triptonide results in increased expression of NFAM1 mRNA	CTD	PMID:33045310
Nfam1	Rat	tungsten	decreases expression	ISO	Nfam1 (Mus musculus)	6480464	Tungsten results in decreased expression of NFAM1 mRNA	CTD	PMID:30912803
Nfam1	Rat	valproic acid	increases methylation	ISO	NFAM1 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of NFAM1 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nfam1	Rat	B cell differentiation	involved_in	ISO	Nfam1 (Mus musculus)	1624291	PMID:15143214	RGD	PMID:15143214
Nfam1	Rat	B cell receptor signaling pathway	involved_in	IBA	MGI:1921289 and PANTHER:PTN002860976	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Nfam1	Rat	B cell receptor signaling pathway	acts_upstream_of_or_within	ISO	Nfam1 (Mus musculus)	1624291	PMID:15143214	RGD	PMID:15143214
Nfam1	Rat	B cell receptor signaling pathway	involved_in	ISO	Nfam1 (Mus musculus)	1624291	PMID:15143214	RGD	PMID:15143214
Nfam1	Rat	calcineurin-NFAT signaling cascade	involved_in	ISO	NFAM1 (Homo sapiens)	1624291	PMID:12615919	RGD	PMID:12615919
Nfam1	Rat	calcineurin-NFAT signaling cascade	involved_in	IEA	UniProtKB:Q8NET5 and ensembl:ENSP00000333680	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Nfam1	Rat	intracellular signal transduction	involved_in	ISO	NFAM1 (Homo sapiens)	1624291	PMID:12615919	RGD	PMID:12615919
Nfam1	Rat	intracellular signal transduction	involved_in	IEA	UniProtKB:Q8NET5 and ensembl:ENSP00000333680	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Nfam1	Rat	positive regulation of B cell receptor signaling pathway	involved_in	IEA	InterPro:IPR033549	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Nfam1	Rat	positive regulation of cytokine production	involved_in	IEA	InterPro:IPR033549	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Nfam1	Rat	regulation of B cell differentiation	acts_upstream_of_or_within	ISO	Nfam1 (Mus musculus)	1624291	PMID:15143214	RGD	PMID:15143214
Nfam1	Rat	regulation of B cell differentiation	involved_in	IEA	InterPro:IPR033549	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Nfam1	Rat	signal transduction	involved_in	ISO	NFAM1 (Homo sapiens)	1624291	PMID:12615919	RGD	PMID:12615919
Nfam1	Rat	signal transduction	involved_in	IEA	UniProtKB:Q8NET5 and ensembl:ENSP00000333680	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nfam1	Rat	cell surface	located_in	ISO	Nfam1 (Mus musculus)	1624291	PMID:15143214	RGD	PMID:15143214
Nfam1	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Nfam1	Rat	membrane	located_in	IEA	UniProtKB:Q8NET5 and ensembl:ENSP00000333680	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Nfam1	Rat	membrane	located_in	ISO	NFAM1 (Homo sapiens)	1624291	PMID:12615919	RGD	PMID:12615919
Nfam1	Rat	membrane	located_in	IEA	InterPro:IPR033549	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Nfam1	Rat	membrane raft	is_active_in	IBA	MGI:1921289 and PANTHER:PTN002860976	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Nfam1	Rat	membrane raft	located_in	ISO	Nfam1 (Mus musculus)	1624291	PMID:15143214	RGD	PMID:15143214

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nfam1	Rat	protein binding	enables	ISO	NFAM1 (Homo sapiens)	1624291	UniProtKB:P15884-3 more ...	RGD	PMID:28514442 more ...
Nfam1	Rat	transmembrane signaling receptor activity	enables	ISO	NFAM1 (Homo sapiens)	1624291	PMID:12615919	RGD	PMID:12615919
Nfam1	Rat	transmembrane signaling receptor activity	enables	IEA	UniProtKB:Q8NET5 and ensembl:ENSP00000333680	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Nfam1	Rat	transmembrane signaling receptor activity	enables	IBA	PANTHER:PTN002860976 and UniProtKB:Q8NET5	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Nfam1	Rat	transmembrane signaling receptor activity	enables	IEA	InterPro:IPR033549	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12615919	PMID:15143214	PMID:15632090

Nfam1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	116,019,383 - 116,055,628 (-)	NCBI		GRCr8
mRatBN7.2	7	114,139,318 - 114,175,395 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	114,139,345 - 114,175,442 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	7	123,856,718 - 123,893,790 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	123,856,567 - 123,892,429 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	123,840,130 - 123,878,194 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	121,019,642 - 121,038,935 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	121,053,871 - 121,110,415 (-)	NCBI
Celera	7	110,453,045 - 110,489,346 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

NFAM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	42,380,407 - 42,437,986 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	42,380,407 - 42,432,403 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	42,776,413 - 42,833,992 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	41,106,357 - 41,158,345 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	41,103,470 - 41,152,894	NCBI
Celera	22	26,582,650 - 26,634,673 (-)	NCBI		Celera
Cytogenetic Map	22	q13.2	NCBI
HuRef	22	25,742,009 - 25,794,106 (-)	NCBI		HuRef
CHM1_1	22	42,735,919 - 42,787,904 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	42,861,411 - 42,918,941 (-)	NCBI		T2T-CHM13v2.0

Nfam1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	82,880,937 - 82,917,598 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	82,877,174 - 82,917,507 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	82,996,736 - 83,033,397 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	82,992,973 - 83,033,306 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	82,828,226 - 82,853,568 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	83,786,288 - 83,811,127 (-)	NCBI		MGSCv36	mm8
MGSCv36	15	82,825,562 - 82,850,904 (-)	NCBI		MGSCv36	mm8
Celera	15	85,131,191 - 85,160,021 (-)	NCBI		Celera
Cytogenetic Map	15	E1	NCBI
cM Map	15	39.01	NCBI

Nfam1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	27,866,271 - 27,893,844 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	27,865,672 - 27,893,793 (-)	NCBI	ChiLan1.0	ChiLan1.0

NFAM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	52,214,207 - 52,272,904 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	54,911,511 - 54,966,328 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	23,276,675 - 23,332,932 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	41,345,206 - 41,401,723 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	41,345,206 - 41,396,721 (-)	Ensembl	panpan1.1		panPan2

NFAM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	23,008,084 - 23,047,227 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	23,008,393 - 23,045,565 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	22,943,409 - 22,982,416 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	23,753,279 - 23,792,222 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	23,753,498 - 23,792,278 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	23,470,674 - 23,509,650 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	23,790,035 - 23,829,043 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	23,965,664 - 24,004,667 (+)	NCBI		UU_Cfam_GSD_1.0

Nfam1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	6,580,977 - 6,612,169 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936718	367,996 - 399,030 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NFAM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	6,298,573 - 6,336,730 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	6,296,921 - 6,333,371 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	4,177,907 - 4,180,704 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NFAM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	24,913,474 - 24,964,803 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	24,918,238 - 24,964,033 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	100,429,217 - 100,480,802 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nfam1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	6,324,181 - 6,357,066 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	6,298,251 - 6,356,562 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Nfam1
253 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	136
Count of miRNA genes:	105
Interacting mature miRNAs:	113
Transcripts:	ENSRNOT00000037681
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	111182207	135012528	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	80221299	124373579	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
2298475	Eau6	Experimental allergic uveoretinitis QTL 6		0.0029	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	7	84257275	129257275	Rat
71114	Niddm14	Non-insulin dependent diabetes mellitus QTL 14	4.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	84257275	129257275	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	94811326	116294265	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	91412594	129807172	Rat
70159	Bp61	Blood pressure QTL 61		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	103146217	116738842	Rat
1357339	Stl14	Serum triglyceride level QTL 14	3.45	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	112729683	133492707	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	73829340	130221005	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	44421311	118198041	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	83153392	128153392	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	81737938	126737938	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat
631663	Bw6	Body weight QTL 6	3.4		body mass (VT:0001259)	body weight (CMO:0000012)	7	111075573	134976056	Rat
1558655	Swd4	Spike wave discharge measurement QTL 4	3.68	0.0002	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge severity grade (CMO:0001988)	7	86983365	131983365	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	80221299	125221299	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	41333674	119109060	Rat
2313102	Bmd79	Bone mineral density QTL 79	2.3	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	7	94811085	116738842	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	112308254	133492884	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	69736226	117455174	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat

BF403511

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	114,157,868 - 114,158,074 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	123,876,105 - 123,876,310	NCBI	Rnor6.0
Rnor_5.0	7	123,859,517 - 123,859,722	UniSTS	Rnor5.0
RGSC_v3.4	7	121,036,520 - 121,036,725	UniSTS	RGSC3.4
Celera	7	110,471,996 - 110,472,201	UniSTS
RH 3.4 Map	7	893.3	UniSTS
Cytogenetic Map	7	q34	UniSTS

RH142997

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	114,140,934 - 114,141,167 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	123,858,760 - 123,858,992	NCBI	Rnor6.0
Rnor_5.0	7	123,842,172 - 123,842,404	UniSTS	Rnor5.0
RGSC_v3.4	7	121,019,327 - 121,019,559	UniSTS	RGSC3.4
Celera	7	110,455,087 - 110,455,319	UniSTS
RH 3.4 Map	7	895.5	UniSTS
Cytogenetic Map	7	q34	UniSTS

BF390884

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	114,157,823 - 114,157,989 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	123,876,060 - 123,876,225	NCBI	Rnor6.0
Rnor_5.0	7	123,859,472 - 123,859,637	UniSTS	Rnor5.0
RGSC_v3.4	7	121,036,475 - 121,036,640	UniSTS	RGSC3.4
Celera	7	110,471,951 - 110,472,116	UniSTS
RH 3.4 Map	7	894.0	UniSTS
Cytogenetic Map	7	q34	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	XM_006226175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006226177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000037681 ⟹ ENSRNOP00000030943

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	114,139,345 - 114,174,102 (-)	Ensembl
Rnor_6.0 Ensembl	7	123,856,567 - 123,892,429 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106015 ⟹ ENSRNOP00000096487

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	114,139,345 - 114,175,442 (-)	Ensembl

RefSeq Acc Id:

XM_006242140 ⟹ XP_006242202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	116,019,383 - 116,054,119 (-)	NCBI
mRatBN7.2	7	114,141,213 - 114,174,060 (-)	NCBI
Rnor_6.0	7	123,856,718 - 123,892,457 (-)	NCBI
Rnor_5.0	7	123,840,130 - 123,878,194 (-)	NCBI

Sequence:

show sequence

GGGTGTTCAGAGGAGGAACTTATGGGCACACAAAAGGGAACTGTAGCTGCTGGCAGGGGCTTTAGTCTCCAGTGAACTAAAGAGGAAGGAGGGACGTTCTTTGATCAAGTGTCCGGTTCACGGTATCC
CATGGAGAGATGGCTTCTGCGGTGTGGGGCCCGGGTGGGATATCTGCACCCCTCCAGCCTGCTCCCAGCCGAGTGCTTCCTCCCTTCCTCCGTTTGCTGCTGGTACCCTGGACCCTGCAGCTAGCAGG
AGGGATAACAGTGACCCATACCGGCCTTCCTATCAGGGTCTTGCTGGCAAACACGGATATGTCCTTTAGCTGCAAAATCCACAACTTCCTAGGAACCGAGATCTTCATGTTCACCGTTAGCTTCTTTT
ACATGGATATCCATGGCGAGAAAAGCTCGGAGAAGCCAATTGCCTGCCAACCCAGGCCTGGCATGGAGAACCAGACCATGGATTGCATGGTTCAACTCAGCCTGCCAAATGCATCAGCCACAGGCACT
TACTACTGCAGAGTCAAAGGACATGTGACAAGTCAGAGCGACGGCATCTTCATTCTGGTCAGAGACACAGGGTACCAGCCACCTTCATTCAAGGTCCAGGAGGCTCTGCTGCTTAGCTTTACCGGCCT
GCTCAGTGTCCTGGGTGTGCTGGGCACGGCGCTGCTGTTCTGGAAGAAGAAACAGATAGCGGTTCTGGGCAAGCACACTGCTAAGACATGCCCTAGTCCCAAACCCACCATCGGAACCACAAAGCCTC
CAGCAGAATCCATCTACACGTCCCTACAGCGTCGAGAGACAGAGGTCTACGCCTGCATCGAGGGAGAGACTGGTAGCCCTGTCTCCAGCCAAAGTCCAGACACCAAGGAGAAAATGAATAGAGTTGAA
GATGACCGTGAATTTAACCTCGTCTATGAAAATCTTTAGAAGTTTTACAGGCTCCGAGCCTTGTCTTGGATTAGGACTCCAGAGCCGCATCTCTTGTCTAAGGACCTGCTTTGGGAGGGCAGTAGAGG
CTTCAGGACACGCCATCTCCTCACCTGCAGTCAGGTCTCTCCCTACCTTGGCCTGGTCTGCTCTCACACTCTGCGTCCCAGCCTGAACAGTTAATGCCTGGGTTTTTGCCCAGGTTGTTCCTCCGTCA
GGAAAGCCATTCCTTCCCTGTGCCCATGGAGAAGTGGTTCTCAGTCCCACGTGGCTCTCTTGGATACCATCTCTTTCCTTTTCACCCCTTACTGCCACCCCTGAAGAGCTGTGTATGTGACCGTCTTG
ACATCTGCCTACAGTTTGGTTCACAGCAGACTTGCCCTTGGGAGAACATAGGAGGACCCCAGTGAGGACTATGCCTGGTCACTGAGTCACCCGGGAGGACATAGTAGGACCCCAGTGAGGACTATGCC
TGGTCACTGAGCCACTCCAGCTGCTCGGCTAGCCCAGAGGCTTGTAGTACAGTGTGGGCAAATGAGGGTGGACTGGCTAAGGAGAGATGGGCGTCGAAGAACTGCTCCAAAACTGGCTGAGCCCAGGG
CCAGAAATGGAGGCTGCGGATATGGCCAGGACCAGAAGCAGGGAGGCTCCATGCACTCTGCTGAGAAAGGAGAATCTAGCTTGTCTCAGGTAGAGGTGGAGGGTGACGGGAGTGCCCATCCCCAATGA
GAACCCTGAGCTAGCTTCCATCAGCCTGTGTAGGCACACACATCACTGTGCCTGCCACCCTAGGCTCTCCAGTCCTCTGTTTCTTATTCTACCCTTAGACACAGTTCCCCCAGTTCCTCCTTGTGACT
TACTCTGACCCCGCTACCCCGGCTTCATGCCCGTTTCCTGTGTTCATTTATTTGCTTTTGACCCGTCTTGCCTCCCCTAAAAATGGAGAGCAGCCTAGCTGTCTCCATGCCACCTCTTTCCTCAGTGG
TTCGGCTACGTGGCTTGCTGCTGAACCTCCCCTGGGCAAGTGGGTGAGTCTCTGTGCTGGAGAAACTCAAGCCAGGGTGGACCAAAGCTCCCCCATACCTTACAGCCTTTCTGGTCCTCCGGGAACTC
ATTCAAGGGACCCATCATTACACCCCAGACACCCCTGCAATAGGGAAGCTGTCTCCTTGGAAGGCAGTATCAGTTCCTGGGGTGCAGGGACTTCCACCTTCCTTCCCTCTGCTTAGCCTGCCATTCCT
TCAGCTTTTTGGTTTAGCTGTGGAACCAATAGGTCAGTCTACCTCCCCTACTTTCCAGGCAGCTTCAAAGGTTTCTGGGATGTTCTCATTCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACT
GAGCTAAATCCCCAACCCCTGGGCTCTACTCTTGAGCACCCAACCTGTAAAGTTCCAGGCTGAGTGAACGCCCATGCTCTTGGAGGCTGGCTTGATGAATTCCCGGTCGGTGAGGAAGGGGAACTACC
TGGCACAGAGCTGCCTCCAGGCTCCTGACTCCCAGCCTCCTGGCTCAGCGGTCTGAGATGAAGCTTAGTGCTGGGGTAAAAACCTTAGCCAGCAAGGACTTGACCATTGTTTCTCCCACATCCCGAGG
TTTATCCAGTCTCTGGATTCTCTGACTGAGACTCAGGGTTTTCAAAACCCTTTCCAGGAGAGTGAGGGATGCCTGAAGGCACTTCATATGGTGCCCTGGCTCAGGACCCAGCACCCAGGTCTCCCAGC
AGTCACCCGGTTCCCACTGCCTCTTCCCTATGAAGCAGCCGGGGAACCTGATAAGACAAGCTTTGTCCTCTTCCTTTCCCCGTGAAAAAGCCTCCCGTGGTTTCTACTTTACTTGCAATAAAATCTCA
GCTCCTTTCTGTGGCTTGGGAGCCCCAGGAAGACTGACACAGACATTGGCAGAGTGGCCGCTGAGTAGTGGGGGCAAAGATGGGCCGTGGGGAAGCCAGAGGTTACCCAGGCCTCTGGTGATCAGGGA
GAGAGACTAGGAAGGAAAGGAGGAGGAAGAAGAGGACAGTTTGGGGTAAAGGGTGCGATATAGGGAGTTTCCATATTAGGGAGGGTGGGGAAGACCATTTTAGGGCTCCCAGTAGTCAACAAAGAAGA
CTGAGCACCCAGTCCCCTCCCCTAAGCCTGAGATCCTCAGATGAGGAGTGCAGATGGCAGTGGTGAAGAAGGAACCCCCAAATGAACCCCTTGTGGAGAGGCTGTGAATGGGAAGGGAGAGGAGAGGC
AGGCTGGATGGCCACAGGACCTCCCTTAGGACCAAGCTCCACTTCCTAGCAGCAACTCAGACTTGATAAAGTGTCACTACCTGCTTGCCTTA

hide sequence

RefSeq Acc Id:

XM_006242142 ⟹ XP_006242204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	116,019,383 - 116,055,628 (-)	NCBI
mRatBN7.2	7	114,141,213 - 114,175,395 (-)	NCBI
Rnor_6.0	7	123,858,975 - 123,893,790 (-)	NCBI
Rnor_5.0	7	123,840,130 - 123,878,194 (-)	NCBI

Sequence:

show sequence

ATCTGCTCCCGGCAGGAGCTGGGGAGCGGCATGAAGCAGATTACCCATGCTTCGCTGTGACACTTGTGATCATGCATCACCTTGATGGATCAACAGCCAATACCGCCTGGGTCCCAGCCCGCCCCTTC
GCGCTACATCTTCTCCTGTTCATATGTCTTCCTCAGCAGGAGGGATAACAGTGACCCATACCGGCCTTCCTATCAGGGTCTTGCTGGCAAACACGGATATGTCCTTTAGCTGCAAAATCCACAACTTC
CTAGGAACCGAGATCTTCATGTTCACCGTTAGCTTCTTTTACATGGATATCCATGGCGAGAAAAGCTCGGAGAAGCCAATTGCCTGCCAACCCAGGCCTGGCATGGAGAACCAGACCATGGATTGCAT
GGTTCAACTCAGCCTGCCAAATGCATCAGCCACAGGCACTTACTACTGCAGAGTCAAAGGACATGTGACAAGTCAGAGCGACGGCATCTTCATTCTGGTCAGAGACACAGGGTACCAGCCACCTTCAT
TCAAGGTCCAGGAGGCTCTGCTGCTTAGCTTTACCGGCCTGCTCAGTGTCCTGGGTGTGCTGGGCACGGCGCTGCTGTTCTGGAAGAAGAAACAGATAGCGGTTCTGGGCAAGCACACTGCTAAGACA
TGCCCTAGTCCCAAACCCACCATCGGAACCACAAAGCCTCCAGCAGAATCCATCTACACGTCCCTACAGCGTCGAGAGACAGAGGTCTACGCCTGCATCGAGGGAGAGACTGGTAGCCCTGTCTCCAG
CCAAAGTCCAGACACCAAGGAGAAAATGAATAGAGTTGAAGATGACCGTGAATTTAACCTCGTCTATGAAAATCTTTAGAAGTTTTACAGGCTCCGAGCCTTGTCTTGGATTAGGACTCCAGAGCCGC
ATCTCTTGTCTAAGGACCTGCTTTGGGAGGGCAGTAGAGGCTTCAGGACAC

hide sequence

RefSeq Acc Id:

XM_039080306 ⟹ XP_038936234

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	116,019,383 - 116,054,127 (-)	NCBI
mRatBN7.2	7	114,141,213 - 114,174,070 (-)	NCBI

RefSeq Acc Id:

XM_039080307 ⟹ XP_038936235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	116,037,848 - 116,054,123 (-)	NCBI
mRatBN7.2	7	114,157,786 - 114,174,065 (-)	NCBI

RefSeq Acc Id:

XM_039080308 ⟹ XP_038936236

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	116,019,383 - 116,054,129 (-)	NCBI
mRatBN7.2	7	114,139,318 - 114,174,072 (-)	NCBI

RefSeq Acc Id:

XM_063264693 ⟹ XP_063120763

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	116,037,848 - 116,055,476 (-)	NCBI


Protein RefSeqs	XP_006242202	(Get FASTA)	NCBI Sequence Viewer
	XP_006242204	(Get FASTA)	NCBI Sequence Viewer
	XP_038936234	(Get FASTA)	NCBI Sequence Viewer
	XP_038936235	(Get FASTA)	NCBI Sequence Viewer
	XP_038936236	(Get FASTA)	NCBI Sequence Viewer
	XP_063120763	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM15642	(Get FASTA)	NCBI Sequence Viewer
	EDM15643	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000030943
	ENSRNOP00000030943.5
	ENSRNOP00000096487
	ENSRNOP00000096487.1

RefSeq Acc Id:	XP_006242204 ⟸ XM_006242142
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6ALW3 (UniProtKB/TrEMBL), A6HT79 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSSAGGITVTHTGLPIRVLLANTDMSFSCKIHNFLGTEIFMFTVSFFYMDIHGEKSSEKPIACQPRPGMENQTMDCMVQLSLPNASATGTYYCRVKGHVTSQSDGIFILVRDTGYQPPSFKVQEALL LSFTGLLSVLGVLGTALLFWKKKQIAVLGKHTAKTCPSPKPTIGTTKPPAESIYTSLQRRETEVYACIEGETGSPVSSQSPDTKEKMNRVEDDREFNLVYENL hide sequence

RefSeq Acc Id:	XP_006242202 ⟸ XM_006242140
- Peptide Label:	isoform X1
- UniProtKB:	F1M0C3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASAVWGPGGISAPLQPAPSRVLPPFLRLLLVPWTLQLAGGITVTHTGLPIRVLLANTDMSFSCKIHNFLGTEIFMFTVSFFYMDIHGEKSSEKPIACQPRPGMENQTMDCMVQLSLPNASATGTYYC RVKGHVTSQSDGIFILVRDTGYQPPSFKVQEALLLSFTGLLSVLGVLGTALLFWKKKQIAVLGKHTAKTCPSPKPTIGTTKPPAESIYTSLQRRETEVYACIEGETGSPVSSQSPDTKEKMNRVEDDR EFNLVYENL hide sequence

Ensembl Acc Id:

ENSRNOP00000030943 ⟸ ENSRNOT00000037681

RefSeq Acc Id:	XP_038936236 ⟸ XM_039080308
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038936234 ⟸ XM_039080306
- Peptide Label:	isoform X2
- UniProtKB:	A6HT79 (UniProtKB/TrEMBL)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M0C3-F1-model_v2	AlphaFold	F1M0C3	1-265	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13695556

Promoter ID:

EPDNEW_R6065

Type:

multiple initiation site

Name:

Nfam1_1

Description:

NFAT activating protein with ITAM motif 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	123,892,399 - 123,892,459	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-32616	BioCyc
Ensembl Genes	ENSRNOG00000022975	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037681	ENTREZGENE
	ENSRNOT00000037681.6	UniProtKB/TrEMBL
	ENSRNOT00000106015	ENTREZGENE
	ENSRNOT00000106015.1	UniProtKB/TrEMBL
InterPro	NFAM1	UniProtKB/TrEMBL
KEGG Report	rno:362966	UniProtKB/TrEMBL
NCBI Gene	362966	ENTREZGENE
PANTHER	NFAT ACTIVATION MOLECULE 1	UniProtKB/TrEMBL
	PTHR35680	UniProtKB/TrEMBL
PhenoGen	Nfam1	PhenoGen
RatGTEx	ENSRNOG00000022975	RatGTEx
UniProt	A0A8I6ALW3	ENTREZGENE, UniProtKB/TrEMBL
	A6HT79	ENTREZGENE, UniProtKB/TrEMBL
	F1M0C3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-11-12	Nfam1	NFAT activating protein with ITAM motif 1	Nfam1	Nfat activating molecule with ITAM motif 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Nfam1	Nfat activating molecule with ITAM motif 1	Nfam1_predicted	NFAT activating protein with ITAM motif 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Nfam1_predicted	NFAT activating protein with ITAM motif 1 (predicted)	RGD1308316_predicted	similar to NFAT activation molecule 1 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1308316_predicted	similar to NFAT activation molecule 1 (predicted)	LOC362966_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362966_predicted	similar to NFAT activation molecule 1 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar