Cblc (Cbl proto-oncogene C) - Rat Genome Database

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Gene: Cblc (Cbl proto-oncogene C) Rattus norvegicus
Analyze
Symbol: Cblc
Name: Cbl proto-oncogene C
RGD ID: 1307651
Description: Predicted to enable several functions, including SH3 domain binding activity; phosphotyrosine residue binding activity; and signaling receptor binding activity. Predicted to be involved in several processes, including negative regulation of signal transduction; protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within several processes, including negative regulation of neuron apoptotic process; protein stabilization; and response to glial cell derived neurotrophic factor. Predicted to be active in membrane raft and plasma membrane. Orthologous to human CBLC (Cbl proto-oncogene C); PARTICIPATES IN chronic myeloid leukemia pathway; endocytosis pathway; epidermal growth factor/neuregulin signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 1-nitropropane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cas-Br-M (murine) ecotropic retroviral transforming sequence c; Casitas B-lineage lymphoma C; Cbl proto-oncogene C, E3 ubiquitin protein ligase; Cbl proto-oncogene, E3 ubiquitin protein ligase C; E3 ubiquitin-protein ligase CBL-C; LOC292699; MGC124804; RING-type E3 ubiquitin transferase CBL-C
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,567,930 - 88,584,709 (-)NCBIGRCr8
mRatBN7.2179,439,975 - 79,456,755 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,439,977 - 79,456,755 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,834,432 - 84,851,213 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,385,937 - 93,402,717 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,589,544 - 86,606,331 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,699,321 - 80,716,146 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,699,323 - 80,716,146 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,964,679 - 81,981,515 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,091,412 - 79,108,189 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1179,170,940 - 79,186,278 (-)NCBI
Celera173,898,303 - 73,914,949 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 75 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CblcRat(1->4)-beta-D-glucan multiple interactionsISOCblc (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of CBLC mRNACTDPMID:36331819
CblcRat1,2-dichloroethane decreases expressionISOCblc (Mus musculus)6480464ethylene dichloride results in decreased expression of CBLC mRNACTDPMID:28960355
CblcRat1,2-dimethylhydrazine increases expressionISOCblc (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of CBLC mRNACTDPMID:22206623
CblcRat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of CBLC mRNACTDPMID:30723492
CblcRat1-nitropropane decreases expressionEXP 64804641-nitropropane results in decreased expression of CBLC mRNACTDPMID:17070881
CblcRat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of CBLC mRNACTDPMID:17557909
CblcRat17beta-estradiol multiple interactionsISOCBLC (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of CBLC mRNACTDPMID:30165855
CblcRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOCblc (Mus musculus)6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to CBLC promoter]CTDPMID:19654925
CblcRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCblc (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of CBLC mRNACTDPMID:21570461
CblcRat2,4-diaminotoluene increases expressionEXP 64804642 and 4-diaminotoluene results in increased expression of CBLC mRNACTDPMID:17070881
CblcRat2,6-diaminotoluene decreases expressionEXP 64804642 and 6-diaminotoluene results in decreased expression of CBLC mRNACTDPMID:17070881
CblcRat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of CBLC mRNACTDPMID:21346803
CblcRat2-acetamidofluorene increases expressionEXP 64804642-Acetylaminofluorene results in increased expression of CBLC mRNACTDPMID:17070881
CblcRat2-nitro-p-phenylenediamine decreases expressionEXP 64804642-nitro-4-phenylenediamine results in decreased expression of CBLC mRNACTDPMID:17070881
CblcRat2-nitropropane increases expressionEXP 64804642-nitropropane results in increased expression of CBLC mRNACTDPMID:17070881
CblcRat4,4'-diaminodiphenylmethane increases expressionISOCblc (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in increased expression of CBLC mRNACTDPMID:18648102
CblcRat4,4'-sulfonyldiphenol decreases expressionISOCblc (Mus musculus)6480464bisphenol S results in decreased expression of CBLC mRNACTDPMID:39298647
CblcRat4-acetylaminofluorene increases expressionEXP 64804644-acetylaminofluorene results in increased expression of CBLC mRNACTDPMID:17070881
CblcRat4-nitro-1,2-phenylenediamine decreases expressionEXP 64804641 and 2-diamino-4-nitrobenzene results in decreased expression of CBLC mRNACTDPMID:17070881
CblcRatacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of CBLC mRNACTDPMID:28959563

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Biological Process
1 to 20 of 21 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CblcRatcell surface receptor signaling pathway involved_inIEAInterPro:IPR003153 and InterPro:IPR0365371600115GO_REF:0000002InterProGO_REF:0000002
CblcRatnegative regulation of epidermal growth factor receptor signaling pathway involved_inISOCBLC (Homo sapiens)1624291 PMID:10362357RGDPMID:10362357
CblcRatnegative regulation of epidermal growth factor receptor signaling pathway involved_inIEAUniProtKB:Q9ULV8 and ensembl:ENSP000004941621600115GO_REF:0000107EnsemblGO_REF:0000107
CblcRatnegative regulation of epidermal growth factor receptor signaling pathway involved_inIBAFB:FBgn0020224 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
CblcRatnegative regulation of MAPK cascade involved_inIEAUniProtKB:Q9ULV8 and ensembl:ENSP000004941621600115GO_REF:0000107EnsemblGO_REF:0000107
CblcRatnegative regulation of MAPK cascade involved_inISOCBLC (Homo sapiens)1624291 PMID:10362357RGDPMID:10362357
CblcRatnegative regulation of neuron apoptotic process acts_upstream_of_or_withinIEAUniProtKB:Q80XL1 and ensembl:ENSMUSP000000399551600115GO_REF:0000107EnsemblGO_REF:0000107
CblcRatnegative regulation of neuron apoptotic process acts_upstream_of_or_withinISOCblc (Mus musculus)1624291 PMID:18753381RGDPMID:18753381
CblcRatprotein catabolic process acts_upstream_of_or_withinISOCblc (Mus musculus)1624291 PMID:18753381RGDPMID:18753381
CblcRatprotein catabolic process acts_upstream_of_or_withinIEAUniProtKB:Q80XL1 and ensembl:ENSMUSP000000399551600115GO_REF:0000107EnsemblGO_REF:0000107
CblcRatprotein stabilization acts_upstream_of_or_withinISOCblc (Mus musculus)1624291 PMID:18753381RGDPMID:18753381
CblcRatprotein stabilization acts_upstream_of_or_withinIEAUniProtKB:Q80XL1 and ensembl:ENSMUSP000000399551600115GO_REF:0000107EnsemblGO_REF:0000107
CblcRatprotein ubiquitination involved_inISOCBLC (Homo sapiens)1624291 PMID:14661060RGDPMID:14661060
CblcRatprotein ubiquitination involved_inIEAUniProtKB:Q9ULV8 and ensembl:ENSP000004941621600115GO_REF:0000107EnsemblGO_REF:0000107
CblcRatprotein ubiquitination involved_inIEAUniPathway:UPA001431600115GO_REF:0000041UniProtGO_REF:0000041
CblcRatregulation of signaling involved_inIEAInterPro:IPR0241621600115GO_REF:0000002InterProGO_REF:0000002
CblcRatresponse to glial cell derived neurotrophic factor acts_upstream_of_or_withinIEAUniProtKB:Q80XL1 and ensembl:ENSMUSP000000399551600115GO_REF:0000107EnsemblGO_REF:0000107
CblcRatresponse to glial cell derived neurotrophic factor acts_upstream_of_or_withinISOCblc (Mus musculus)1624291 PMID:18753381RGDPMID:18753381
CblcRatsignal transduction involved_inIBAMGI:2146430 and PANTHER:PTN0011240991600115GO_REF:0000033GO_CentralGO_REF:0000033
CblcRatubiquitin-dependent protein catabolic process involved_inISOCBLC (Homo sapiens)1624291 PMID:14661060RGDPMID:14661060
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Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CblcRatmembrane raft is_active_inIBAMGI:88279 and PANTHER:PTN0011240991600115GO_REF:0000033GO_CentralGO_REF:0000033
CblcRatplasma membrane is_active_inIBAMGI:88279 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function
1 to 20 of 21 rows

  
Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CblcRatcalcium ion binding enablesIEAInterPro:IPR0147411600115GO_REF:0000002InterProGO_REF:0000002
CblcRatcalcium ion binding enablesIEAUniRule:UR0013487511600115GO_REF:0000104UniProtGO_REF:0000104
CblcRatepidermal growth factor receptor binding enablesISOCBLC (Homo sapiens)1624291 PMID:10362357RGDPMID:10362357
CblcRatepidermal growth factor receptor binding enablesIEAUniProtKB:Q9ULV8 and ensembl:ENSP000004941621600115GO_REF:0000107EnsemblGO_REF:0000107
CblcRatmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
CblcRatphosphotyrosine residue binding enablesISOCBLC (Homo sapiens)1624291 PMID:14661060RGDPMID:14661060
CblcRatphosphotyrosine residue binding enablesIEAUniProtKB:Q9ULV8 and ensembl:ENSP000004941621600115GO_REF:0000107EnsemblGO_REF:0000107
CblcRatphosphotyrosine residue binding enablesIEAInterPro:IPR0241591600115GO_REF:0000002InterProGO_REF:0000002
CblcRatphosphotyrosine residue binding enablesIEAUniRule:UR0013487511600115GO_REF:0000104UniProtGO_REF:0000104
CblcRatprotein binding enablesISOCBLC (Homo sapiens)1624291UniProtKB:P07947 more ...RGDPMID:32296183 and PMID:32814053
CblcRatprotein binding enablesISOCblc (Mus musculus)1624291UniProtKB:P35546 and PMID:18753381RGDPMID:18753381
CblcRatreceptor tyrosine kinase binding enablesIBAFB:FBgn0020224 and PANTHER:PTN0005440091600115GO_REF:0000033GO_CentralGO_REF:0000033
CblcRatSH3 domain binding enablesISOCBLC (Homo sapiens)1624291 PMID:10362357RGDPMID:10362357
CblcRatSH3 domain binding enablesIEAUniProtKB-KW:KW-07291600115GO_REF:0000043UniProtGO_REF:0000043
CblcRatSH3 domain binding enablesIEAUniProtKB:Q9ULV8 and ensembl:ENSP000004941621600115GO_REF:0000107EnsemblGO_REF:0000107
CblcRattransferase activity enablesIEAUniProtKB-KW:KW-08081600115GO_REF:0000043UniProtGO_REF:0000043
CblcRatubiquitin protein ligase activity enablesISOCBLC (Homo sapiens)1624291 PMID:14661060RGDPMID:14661060
CblcRatubiquitin protein ligase activity enablesIEAUniProtKB:Q9ULV8 and ensembl:ENSP000004941621600115GO_REF:0000107EnsemblGO_REF:0000107
CblcRatubiquitin protein ligase activity enablesIBAFB:FBgn0020224 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
CblcRatubiquitin-protein transferase activity enablesIEAInterPro:IPR0241621600115GO_REF:0000002InterProGO_REF:0000002
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Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CblcRatchronic myeloid leukemia pathway  IEA 6907045 KEGGrno:05220
CblcRatendocytosis pathway  IEA 6907045 KEGGrno:04144
CblcRatepidermal growth factor/neuregulin signaling pathway   IEA 6907045 KEGGrno:04012
CblcRatinsulin signaling pathway   IEA 6907045 KEGGrno:04910
CblcRatJak-Stat signaling pathway   IEA 6907045 KEGGrno:04630
CblcRatT cell receptor signaling pathway  IEA 6907045 KEGGrno:04660
CblcRatubiquitin/proteasome degradation pathway  IEA 6907045 KEGGrno:04120

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10362357   PMID:12477932   PMID:14661060   PMID:23376485  



Cblc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,567,930 - 88,584,709 (-)NCBIGRCr8
mRatBN7.2179,439,975 - 79,456,755 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,439,977 - 79,456,755 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,834,432 - 84,851,213 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,385,937 - 93,402,717 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,589,544 - 86,606,331 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,699,321 - 80,716,146 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,699,323 - 80,716,146 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,964,679 - 81,981,515 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,091,412 - 79,108,189 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1179,170,940 - 79,186,278 (-)NCBI
Celera173,898,303 - 73,914,949 (-)NCBICelera
Cytogenetic Map1q21NCBI
CBLC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381944,777,869 - 44,800,652 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1944,777,869 - 44,800,652 (+)EnsemblGRCh38hg38GRCh38
GRCh371945,281,126 - 45,303,909 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361949,972,988 - 49,995,731 (+)NCBINCBI36Build 36hg18NCBI36
Build 341949,972,987 - 49,995,731NCBI
Celera1942,085,488 - 42,107,328 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1941,713,154 - 41,735,790 (+)NCBIHuRef
CHM1_11945,283,856 - 45,306,632 (+)NCBICHM1_1
T2T-CHM13v2.01947,602,623 - 47,625,402 (+)NCBIT2T-CHM13v2.0
Cblc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,513,643 - 19,530,734 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,512,806 - 19,530,734 (-)EnsemblGRCm39 Ensembl
GRCm38719,779,718 - 19,796,809 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,778,881 - 19,796,809 (-)EnsemblGRCm38mm10GRCm38
MGSCv37720,365,067 - 20,382,158 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,938,242 - 18,955,331 (-)NCBIMGSCv36mm8
Celera717,187,514 - 17,204,632 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.94NCBI
Cblc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555551,921,912 - 1,935,096 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555551,921,896 - 1,941,247 (+)NCBIChiLan1.0ChiLan1.0
CBLC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22050,933,383 - 50,960,455 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11952,808,296 - 52,832,395 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01941,726,272 - 41,748,829 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,331,257 - 50,353,865 (+)NCBIpanpan1.1PanPan1.1panPan2
CBLC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,590,548 - 110,606,775 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,590,804 - 110,606,781 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1110,071,648 - 110,088,645 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01111,153,520 - 111,169,844 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1111,153,776 - 111,169,908 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,794,862 - 110,811,626 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,430,583 - 110,447,333 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,299,843 - 111,316,680 (-)NCBIUU_Cfam_GSD_1.0
Cblc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,089,393 - 17,106,072 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367061,436,732 - 1,450,485 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBLC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,276,544 - 51,292,549 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,274,717 - 51,292,546 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,174,865 - 47,192,017 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CBLC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,257,418 - 38,285,534 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl638,257,672 - 38,280,051 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607317,821,913 - 17,852,623 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cblc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249071,676,021 - 1,691,137 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249071,676,296 - 1,690,479 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Cblc
100 total Variants

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:62
Interacting mature miRNAs:65
Transcripts:ENSRNOT00000025829
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 47 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat

1 to 10 of 47 rows
D1Rat261  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8188,577,808 - 88,577,965 (+)Marker Load Pipeline
mRatBN7.2179,449,854 - 79,450,011 (+)MAPPERmRatBN7.2
Rnor_6.0180,709,251 - 80,709,404NCBIRnor6.0
Rnor_5.0181,974,609 - 81,974,762UniSTSRnor5.0
RGSC_v3.4179,101,290 - 79,101,447RGDRGSC3.4
RGSC_v3.4179,101,291 - 79,101,447UniSTSRGSC3.4
RGSC_v3.1179,179,402 - 79,179,558RGD
RH 3.4 Map1787.1UniSTS
RH 3.4 Map1787.1RGD
RH 2.0 Map1512.2RGD
SHRSP x BN Map141.1399RGD
Cytogenetic Map1q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 41 49 90 90 59 21 59 6 205 84 30 45 59 31



Ensembl Acc Id: ENSRNOT00000025829   ⟹   ENSRNOP00000025829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,439,977 - 79,456,755 (-)Ensembl
Rnor_6.0 Ensembl180,699,323 - 80,716,146 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092048   ⟹   ENSRNOP00000070090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,443,496 - 79,456,755 (-)Ensembl
Rnor_6.0 Ensembl180,700,479 - 80,716,143 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110504   ⟹   ENSRNOP00000095345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,439,977 - 79,456,755 (-)Ensembl
RefSeq Acc Id: NM_001034920   ⟹   NP_001030092
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,567,930 - 88,584,709 (-)NCBI
mRatBN7.2179,439,975 - 79,456,755 (-)NCBI
Rnor_6.0180,699,321 - 80,716,146 (-)NCBI
Rnor_5.0181,964,679 - 81,981,515 (-)NCBI
RGSC_v3.4179,091,412 - 79,108,189 (-)RGD
Celera173,898,303 - 73,914,949 (-)RGD
Sequence:
1 to 11 of 11 rows
Protein RefSeqs NP_001030092 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05777 (Get FASTA)   NCBI Sequence Viewer  
  EDM08130 (Get FASTA)   NCBI Sequence Viewer  
  EDM08131 (Get FASTA)   NCBI Sequence Viewer  
  EDM08132 (Get FASTA)   NCBI Sequence Viewer  
  EDM08133 (Get FASTA)   NCBI Sequence Viewer  
  EDM08134 (Get FASTA)   NCBI Sequence Viewer  
  EDM08135 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025829
  ENSRNOP00000025829.4
GenBank Protein G3V8H4 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_001030092   ⟸   NM_001034920
- UniProtKB: Q3KRC9 (UniProtKB/Swiss-Prot),   G3V8H4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070090   ⟸   ENSRNOT00000092048
Ensembl Acc Id: ENSRNOP00000025829   ⟸   ENSRNOT00000025829
Ensembl Acc Id: ENSRNOP00000095345   ⟸   ENSRNOT00000110504
Cbl-PTB   RING-type

Name Modeler Protein Id AA Range Protein Structure
AF-G3V8H4-F1-model_v2 AlphaFold G3V8H4 1-497 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689783
Promoter ID:EPDNEW_R308
Type:multiple initiation site
Name:Cblc_1
Description:Cbl proto-oncogene C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0180,716,142 - 80,716,202EPDNEW


1 to 40 of 49 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60484 BioCyc
Ensembl Genes ENSRNOG00000018953 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000025829 ENTREZGENE
  ENSRNOT00000025829.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.930.20 UniProtKB/Swiss-Prot
  3.30.40.10 UniProtKB/Swiss-Prot
  3.30.505.10 UniProtKB/Swiss-Prot
  EF-hand UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7931977 IMAGE-MGC_LOAD
InterPro Adaptor_Cbl UniProtKB/Swiss-Prot
  Adaptor_Cbl_EF_hand-like UniProtKB/Swiss-Prot
  Adaptor_Cbl_N_dom_sf UniProtKB/Swiss-Prot
  Adaptor_Cbl_N_hlx UniProtKB/Swiss-Prot
  Adaptor_Cbl_SH2-like UniProtKB/Swiss-Prot
  Cbl_PTB UniProtKB/Swiss-Prot
  EF-hand-dom_pair UniProtKB/Swiss-Prot
  SH2_dom_sf UniProtKB/Swiss-Prot
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
  Znf_RING_CS UniProtKB/Swiss-Prot
KEGG Report rno:292699 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124804 IMAGE-MGC_LOAD
NCBI Gene 292699 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE CBL-C UniProtKB/Swiss-Prot
  PTHR23007 UniProtKB/Swiss-Prot
Pfam Cbl_N UniProtKB/Swiss-Prot
  Cbl_N2 UniProtKB/Swiss-Prot
  Cbl_N3 UniProtKB/Swiss-Prot
  zf-C3HC4_3 UniProtKB/Swiss-Prot
PhenoGen Cblc PhenoGen
PROSITE CBL_PTB UniProtKB/Swiss-Prot
  ZF_RING_1 UniProtKB/Swiss-Prot
  ZF_RING_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000018953 RatGTEx
SMART RING UniProtKB/Swiss-Prot
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot
  SSF47473 UniProtKB/Swiss-Prot
  SSF47668 UniProtKB/Swiss-Prot
  SSF55550 UniProtKB/Swiss-Prot
UniProt A0A8I6AL90_RAT UniProtKB/TrEMBL
1 to 40 of 49 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-05 Cblc  Cbl proto-oncogene C  Cblc  Casitas B-lineage lymphoma C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-05-04 Cblc  Casitas B-lineage lymphoma C  Cblc  Cbl proto-oncogene C, E3 ubiquitin protein ligase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-07-18 Cblc  Cbl proto-oncogene C, E3 ubiquitin protein ligase  Cblc  Cbl proto-oncogene, E3 ubiquitin protein ligase C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-13 Cblc  Cbl proto-oncogene, E3 ubiquitin protein ligase C  Cblc  Cas-Br-M (murine) ecotropic retroviral transforming sequence c  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Cblc  Cas-Br-M (murine) ecotropic retroviral transforming sequence c  Cblc  Casitas B-lineage lymphoma c  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Cblc  Casitas B-lineage lymphoma c  Cblc_predicted  Casitas B-lineage lymphoma c (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cblc_predicted  Casitas B-lineage lymphoma c (predicted)      Symbol and Name status set to approved 70820 APPROVED