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Gene: Zbtb17 (zinc finger and BTB domain containing 17) Rattus norvegicus

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Symbol:

Zbtb17

Name:

zinc finger and BTB domain containing 17

RGD ID:

1307143

Description:

Predicted to enable several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; transcription cis-regulatory region binding activity; and transcription coactivator binding activity. Predicted to be involved in several processes, including negative regulation of cell population proliferation; regulation of cytokine production; and regulation of transcription by RNA polymerase II. Predicted to act upstream of with a negative effect on G1 to G0 transition. Predicted to act upstream of or within ectoderm development; gastrulation with mouth forming second; and positive regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of protein-DNA complex. Predicted to be active in nucleoplasm. Orthologous to human ZBTB17 (zinc finger and BTB domain containing 17); PARTICIPATES IN cell cycle pathway, mitotic; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC313666; Zfp100; zinc finger and BTB domain-containing protein 17; zinc finger protein 100

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	159,036,482 - 159,057,580 (+)	NCBI		GRCr8
mRatBN7.2	5	153,753,508 - 153,774,613 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	153,753,569 - 153,774,609 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	156,440,859 - 156,461,960 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	158,214,147 - 158,235,248 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	158,203,320 - 158,224,423 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	159,993,799 - 160,014,899 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	159,993,799 - 160,014,895 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	163,713,685 - 163,734,715 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	160,337,988 - 160,359,060 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	160,348,175 - 160,369,246 (+)	NCBI
Celera	5	152,113,183 - 152,134,155 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zbtb17	Rat	chromosome 1p36 deletion syndrome		ISO	ZBTB17 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Chromosome 1p36 deletion syndrome	ClinVar

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zbtb17	Rat	1-chloro-2,4-dinitrobenzene	decreases expression	ISO	ZBTB17 (Homo sapiens)	6480464	Dinitrochlorobenzene results in decreased expression of ZBTB17 mRNA	CTD	PMID:17374397
Zbtb17	Rat	2,2',4,4'-Tetrabromodiphenyl ether	affects expression	ISO	Zbtb17 (Mus musculus)	6480464	2 more ...	CTD	PMID:30294300
Zbtb17	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Zbtb17 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in increased expression of ZBTB17 mRNA	CTD	PMID:24058054
Zbtb17	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of ZBTB17 mRNA	CTD	PMID:33387578
Zbtb17	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	ZBTB17 (Homo sapiens)	6480464	Tetrachlorodibenzodioxin results in increased expression of ZBTB17 mRNA	CTD	PMID:23152189
Zbtb17	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Zbtb17 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of ZBTB17 mRNA	CTD	PMID:21570461
Zbtb17	Rat	2,4-dinitrotoluene	affects expression	EXP		6480464	2 and 4-dinitrotoluene affects the expression of ZBTB17 mRNA	CTD	PMID:21346803
Zbtb17	Rat	2,6-dinitrotoluene	affects expression	EXP		6480464	2 and 6-dinitrotoluene affects the expression of ZBTB17 mRNA	CTD	PMID:21346803
Zbtb17	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of ZBTB17 mRNA	CTD	PMID:30047161
Zbtb17	Rat	aflatoxin B1	increases expression	ISO	Zbtb17 (Mus musculus)	6480464	Aflatoxin B1 results in increased expression of ZBTB17 mRNA	CTD	PMID:19770486
Zbtb17	Rat	aflatoxin B1	increases methylation	ISO	ZBTB17 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of ZBTB17 gene	CTD	PMID:27153756
Zbtb17	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of ZBTB17 mRNA	CTD	PMID:30047161
Zbtb17	Rat	aristolochic acid A	increases expression	ISO	ZBTB17 (Homo sapiens)	6480464	aristolochic acid I results in increased expression of ZBTB17 mRNA	CTD	PMID:33212167
Zbtb17	Rat	benzo[a]pyrene	increases expression	ISO	Zbtb17 (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of ZBTB17 mRNA	CTD	PMID:22228805
Zbtb17	Rat	benzo[a]pyrene	affects methylation	ISO	ZBTB17 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of ZBTB17 5' UTR	CTD	PMID:27901495
Zbtb17	Rat	benzo[a]pyrene	increases methylation	ISO	ZBTB17 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of ZBTB17 promoter	CTD	PMID:27901495
Zbtb17	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of ZBTB17 mRNA	CTD	PMID:25181051 more ...
Zbtb17	Rat	bisphenol A	decreases methylation	ISO	ZBTB17 (Homo sapiens)	6480464	bisphenol A results in decreased methylation of ZBTB17 gene	CTD	PMID:31601247
Zbtb17	Rat	bisphenol A	affects methylation	ISO	Zbtb17 (Mus musculus)	6480464	bisphenol A affects the methylation of ZBTB17 promoter	CTD	PMID:27334623
Zbtb17	Rat	bisphenol A	decreases methylation	ISO	Zbtb17 (Mus musculus)	6480464	bisphenol A results in decreased methylation of ZBTB17 promoter	CTD	PMID:27312807
Zbtb17	Rat	bisphenol F	multiple interactions	ISO	ZBTB17 (Homo sapiens)	6480464	[bisphenol F co-treated with Fulvestrant] results in increased methylation of ZBTB17 gene	CTD	PMID:31601247
Zbtb17	Rat	calciol	decreases expression	ISO	Zbtb17 (Mus musculus)	6480464	Cholecalciferol results in decreased expression of ZBTB17 mRNA	CTD	PMID:16508948
Zbtb17	Rat	carmustine	decreases expression	ISO	ZBTB17 (Homo sapiens)	6480464	Carmustine results in decreased expression of ZBTB17 mRNA	CTD	PMID:15980968
Zbtb17	Rat	cobalt dichloride	increases expression	ISO	ZBTB17 (Homo sapiens)	6480464	cobaltous chloride results in increased expression of ZBTB17 mRNA	CTD	PMID:19376846
Zbtb17	Rat	copper atom	multiple interactions	ISO	ZBTB17 (Homo sapiens)	6480464	[Chelating Agents binds to Copper] which results in increased expression of ZBTB17 mRNA	CTD	PMID:30911355
Zbtb17	Rat	copper(0)	multiple interactions	ISO	ZBTB17 (Homo sapiens)	6480464	[Chelating Agents binds to Copper] which results in increased expression of ZBTB17 mRNA	CTD	PMID:30911355
Zbtb17	Rat	coumarin	increases phosphorylation	ISO	ZBTB17 (Homo sapiens)	6480464	coumarin results in increased phosphorylation of ZBTB17 protein	CTD	PMID:35688186
Zbtb17	Rat	cylindrospermopsin	increases expression	ISO	ZBTB17 (Homo sapiens)	6480464	cylindrospermopsin results in increased expression of ZBTB17 mRNA	CTD	PMID:24921660
Zbtb17	Rat	DDE	decreases expression	ISO	ZBTB17 (Homo sapiens)	6480464	Dichlorodiphenyl Dichloroethylene results in decreased expression of ZBTB17 mRNA	CTD	PMID:38568856
Zbtb17	Rat	diazinon	affects expression	EXP		6480464	Diazinon affects the expression of ZBTB17 mRNA	CTD	PMID:22546817
Zbtb17	Rat	dibutyl phthalate	increases expression	EXP		6480464	Dibutyl Phthalate results in increased expression of ZBTB17 mRNA	CTD	PMID:21266533
Zbtb17	Rat	dieldrin	affects expression	EXP		6480464	Dieldrin affects the expression of ZBTB17 mRNA	CTD	PMID:22546817
Zbtb17	Rat	eugenol	decreases expression	ISO	ZBTB17 (Homo sapiens)	6480464	Eugenol results in decreased expression of ZBTB17 mRNA	CTD	PMID:17374397
Zbtb17	Rat	fenthion	decreases expression	ISO	Zbtb17 (Mus musculus)	6480464	Fenthion results in decreased expression of ZBTB17 mRNA	CTD	PMID:34813904
Zbtb17	Rat	FR900359	increases phosphorylation	ISO	ZBTB17 (Homo sapiens)	6480464	FR900359 results in increased phosphorylation of ZBTB17 protein	CTD	PMID:37730182
Zbtb17	Rat	fulvestrant	multiple interactions	ISO	ZBTB17 (Homo sapiens)	6480464	[bisphenol F co-treated with Fulvestrant] results in increased methylation of ZBTB17 gene	CTD	PMID:31601247
Zbtb17	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of ZBTB17 mRNA	CTD	PMID:33387578
Zbtb17	Rat	methidathion	decreases expression	ISO	Zbtb17 (Mus musculus)	6480464	methidathion results in decreased expression of ZBTB17 mRNA	CTD	PMID:34813904
Zbtb17	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of ZBTB17 mRNA	CTD	PMID:30047161
Zbtb17	Rat	nickel sulfate	decreases expression	ISO	ZBTB17 (Homo sapiens)	6480464	nickel sulfate results in decreased expression of ZBTB17 mRNA	CTD	PMID:17374397
Zbtb17	Rat	ozone	multiple interactions	ISO	ZBTB17 (Homo sapiens)	6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of ZBTB17 mRNA	CTD	PMID:35430440
Zbtb17	Rat	paracetamol	affects expression	ISO	Zbtb17 (Mus musculus)	6480464	Acetaminophen affects the expression of ZBTB17 mRNA	CTD	PMID:17562736
Zbtb17	Rat	phenobarbital	affects expression	ISO	ZBTB17 (Homo sapiens)	6480464	Phenobarbital affects the expression of ZBTB17 mRNA	CTD	PMID:19159669
Zbtb17	Rat	PhIP	increases expression	EXP		6480464	2-amino-1-methyl-6-phenylimidazo(4 and 5-b)pyridine results in increased expression of ZBTB17 mRNA	CTD	PMID:15215175
Zbtb17	Rat	pirinixic acid	multiple interactions	ISO	ZBTB17 (Homo sapiens)	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in decreased expression of ZBTB17 mRNA	CTD	PMID:19710929
Zbtb17	Rat	pirinixic acid	multiple interactions	ISO	Zbtb17 (Mus musculus)	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in increased expression of ZBTB17 mRNA	CTD	PMID:19710929
Zbtb17	Rat	pregnenolone 16alpha-carbonitrile	decreases expression	EXP		6480464	Pregnenolone Carbonitrile results in decreased expression of ZBTB17 mRNA	CTD	PMID:30047161
Zbtb17	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of ZBTB17 mRNA	CTD	PMID:30047161
Zbtb17	Rat	tetrachloroethene	decreases expression	ISO	Zbtb17 (Mus musculus)	6480464	Tetrachloroethylene results in decreased expression of ZBTB17 mRNA	CTD	PMID:28973375
Zbtb17	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of ZBTB17 mRNA	CTD	PMID:34492290
Zbtb17	Rat	thiram	increases expression	ISO	ZBTB17 (Homo sapiens)	6480464	Thiram results in increased expression of ZBTB17 mRNA	CTD	PMID:38568856
Zbtb17	Rat	titanium dioxide	increases methylation	ISO	Zbtb17 (Mus musculus)	6480464	titanium dioxide results in increased methylation of ZBTB17 gene	CTD	PMID:35295148
Zbtb17	Rat	titanium dioxide	decreases methylation	ISO	Zbtb17 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of ZBTB17 gene	CTD	PMID:35295148
Zbtb17	Rat	triphenyl phosphate	affects expression	ISO	ZBTB17 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of ZBTB17 mRNA	CTD	PMID:37042841
Zbtb17	Rat	troglitazone	decreases expression	ISO	Zbtb17 (Mus musculus)	6480464	troglitazone results in decreased expression of ZBTB17 mRNA	CTD	PMID:28973697
Zbtb17	Rat	valproic acid	increases methylation	ISO	ZBTB17 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of ZBTB17 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zbtb17	Rat	ectoderm development	acts_upstream_of_or_within	ISO	Zbtb17 (Mus musculus)	1624291	MGI:2679766 PMID:14560010	RGD	PMID:14560010
Zbtb17	Rat	ectoderm development	acts_upstream_of_or_within	IEA	UniProtKB:Q60821 and ensembl:ENSMUSP00000006377	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	G1 to G0 transition	acts_upstream_of_negative_effect	ISO	ZBTB17 (Homo sapiens)	1624291	PMID:19160485	RGD	PMID:19160485
Zbtb17	Rat	G1 to G0 transition	acts_upstream_of_negative_effect	IEA	UniProtKB:Q13105 and ensembl:ENSP00000364895	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	gastrulation with mouth forming second	acts_upstream_of_or_within	IEA	UniProtKB:Q60821 and ensembl:ENSMUSP00000006377	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	gastrulation with mouth forming second	acts_upstream_of_or_within	ISO	Zbtb17 (Mus musculus)	1624291	MGI:2679766 PMID:14560010	RGD	PMID:14560010
Zbtb17	Rat	negative regulation of cell population proliferation	involved_in	ISO	ZBTB17 (Homo sapiens)	1624291	PMID:19160485	RGD	PMID:19160485
Zbtb17	Rat	negative regulation of cell population proliferation	involved_in	IEA	UniProtKB:Q13105 and ensembl:ENSP00000364895	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	negative regulation of transcription by RNA polymerase II	involved_in	IBA	MGI:107187 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zbtb17	Rat	positive regulation of DNA-templated transcription	acts_upstream_of_or_within	ISO	Zbtb17 (Mus musculus)	1624291	PMID:18045875	RGD	PMID:18045875
Zbtb17	Rat	positive regulation of DNA-templated transcription	acts_upstream_of_or_within	IEA	UniProtKB:Q60821 and ensembl:ENSMUSP00000006377	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	positive regulation of transcription by RNA polymerase II	involved_in	ISO	ZBTB17 (Homo sapiens)	1624291	PMID:19160485 and PMID:9312026	RGD	PMID:19160485 and PMID:9312026
Zbtb17	Rat	positive regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:Q13105 and ensembl:ENSP00000364895	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	regulation of cytokine production	involved_in	IBA	MGI:107187 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zbtb17	Rat	regulation of immune system process	involved_in	IBA	MGI:107187 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zbtb17	Rat	nucleoplasm	is_active_in	IBA	PANTHER:PTN002393396 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zbtb17	Rat	nucleus	located_in	IEA	UniProtKB:Q60821 and ensembl:ENSMUSP00000006377	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Zbtb17	Rat	nucleus	located_in	ISO	Zbtb17 (Mus musculus)	1624291	PMID:18045875	RGD	PMID:18045875
Zbtb17	Rat	protein-containing complex	part_of	ISO	ZBTB17 (Homo sapiens)	1624291	PMID:19160485	RGD	PMID:19160485
Zbtb17	Rat	protein-containing complex	part_of	IEA	UniProtKB:Q13105 and ensembl:ENSP00000364895	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	protein-DNA complex	part_of	ISO	ZBTB17 (Homo sapiens)	1624291	PMID:19160485	RGD	PMID:19160485
Zbtb17	Rat	protein-DNA complex	part_of	IEA	UniProtKB:Q13105 and ensembl:ENSP00000364895	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zbtb17	Rat	core promoter sequence-specific DNA binding	enables	ISO	ZBTB17 (Homo sapiens)	1624291	PMID:19160485	RGD	PMID:19160485
Zbtb17	Rat	core promoter sequence-specific DNA binding	enables	IEA	UniProtKB:Q13105 and ensembl:ENSP00000364895	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	DNA binding	enables	IEA	UniProtKB:Q60821 and ensembl:ENSMUSP00000006377	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	DNA binding	enables	IEA	UniProtKB-KW:KW-0238	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Zbtb17	Rat	DNA binding	enables	ISO	Zbtb17 (Mus musculus)	1624291	PMID:14560010	RGD	PMID:14560010
Zbtb17	Rat	DNA-binding transcription activator activity, RNA polymerase II-specific	enables	ISO	ZBTB17 (Homo sapiens)	1624291	PMID:19160485 and PMID:9312026	RGD	PMID:19160485 and PMID:9312026
Zbtb17	Rat	DNA-binding transcription activator activity, RNA polymerase II-specific	enables	IEA	UniProtKB:Q13105 and ensembl:ENSP00000364895	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	DNA-binding transcription factor activity	enables	ISO	ZBTB17 (Homo sapiens)	1624291	PMID:12244100	RGD	PMID:12244100
Zbtb17	Rat	DNA-binding transcription factor activity	enables	IEA	UniProtKB:Q13105 and ensembl:ENSP00000364895	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	DNA-binding transcription factor binding	enables	ISO	ZBTB17 (Homo sapiens)	1624291	UniProtKB:P01106 and PMID:19160485	RGD	PMID:19160485
Zbtb17	Rat	DNA-binding transcription factor binding	enables	IEA	UniProtKB:Q13105 and ensembl:ENSP00000364895	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	DNA-binding transcription repressor activity, RNA polymerase II-specific	enables	IBA	MGI:107187 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zbtb17	Rat	protein binding	enables	ISO	ZBTB17 (Homo sapiens)	1624291	UniProtKB:P01106 more ...	RGD	PMID:12244100 more ...
Zbtb17	Rat	protein binding	enables	ISO	Zbtb17 (Mus musculus)	1624291	PR:P23611 more ...	RGD	PMID:15752756 more ...
Zbtb17	Rat	protein binding	enables	ISO	ZBTB17 (Homo sapiens) and UniProtKB:Q13105-1	1624291	UniProtKB:Q07120 and PMID:19164764	RGD	PMID:19164764
Zbtb17	Rat	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	ISO	ZBTB17 (Homo sapiens)	1624291	PMID:9312026	RGD	PMID:9312026
Zbtb17	Rat	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	IBA	MGI:107187 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zbtb17	Rat	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	IEA	UniProtKB:Q13105 and ensembl:ENSP00000364895	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	transcription coactivator binding	enables	ISO	ZBTB17 (Homo sapiens)	1624291	UniProtKB:P06748 and PMID:19160485	RGD	PMID:19160485
Zbtb17	Rat	transcription coactivator binding	enables	IEA	UniProtKB:Q13105 and ensembl:ENSP00000364895	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zbtb17	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Imported Annotations - KEGG (archival)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zbtb17	Rat	cell cycle pathway, mitotic		IEA		6907045		KEGG	rno:04110

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:9312026	PMID:11068878	PMID:12244100	PMID:12477932	PMID:14560010	PMID:18045875	PMID:19160485	PMID:24912190

Zbtb17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	159,036,482 - 159,057,580 (+)	NCBI		GRCr8
mRatBN7.2	5	153,753,508 - 153,774,613 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	153,753,569 - 153,774,609 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	156,440,859 - 156,461,960 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	158,214,147 - 158,235,248 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	158,203,320 - 158,224,423 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	159,993,799 - 160,014,899 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	159,993,799 - 160,014,895 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	163,713,685 - 163,734,715 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	160,337,988 - 160,359,060 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	160,348,175 - 160,369,246 (+)	NCBI
Celera	5	152,113,183 - 152,134,155 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

ZBTB17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	15,941,869 - 15,976,101 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	15,941,869 - 15,976,132 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	16,268,364 - 16,302,596 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	16,140,951 - 16,175,101 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	16,013,671 - 16,047,820	NCBI
Celera	1	14,748,238 - 14,782,515 (-)	NCBI		Celera
Cytogenetic Map	1	p36.13	NCBI
HuRef	1	14,787,372 - 14,821,661 (-)	NCBI		HuRef
CHM1_1	1	16,066,899 - 16,101,159 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	15,383,149 - 15,417,408 (-)	NCBI		T2T-CHM13v2.0

Zbtb17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	141,171,984 - 141,195,248 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	141,171,965 - 141,195,241 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	141,444,673 - 141,467,937 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	141,444,654 - 141,467,930 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	141,000,588 - 141,023,852 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	140,716,760 - 140,739,305 (+)	NCBI		MGSCv36	mm8
Celera	4	143,261,157 - 143,285,202 (+)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	74.17	NCBI

Zbtb17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955527	2,252,074 - 2,282,787 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955527	2,252,118 - 2,278,127 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	210,944,784 - 210,977,584 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	210,193,373 - 210,226,193 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	15,080,880 - 15,113,676 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	16,074,005 - 16,106,709 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	16,074,005 - 16,106,700 (-)	Ensembl	panpan1.1		panPan2

ZBTB17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	81,652,015 - 81,682,647 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	81,652,157 - 81,682,660 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	78,188,685 - 78,220,088 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	82,297,860 - 82,329,775 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	82,297,873 - 82,329,761 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	79,051,015 - 79,083,027 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	80,069,989 - 80,101,528 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	81,136,103 - 81,167,412 (+)	NCBI		UU_Cfam_GSD_1.0

Zbtb17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	37,712,259 - 37,738,912 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	3,537,043 - 3,563,770 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	3,535,351 - 3,563,664 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	75,107,427 - 75,144,069 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	75,108,728 - 75,144,103 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ZBTB17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	116,324,794 - 116,358,600 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	19,851,110 - 19,885,521 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zbtb17
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	2,144,878 - 2,174,545 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	2,144,555 - 2,174,177 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Zbtb17
46 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	38
Count of miRNA genes:	36
Interacting mature miRNAs:	38
Transcripts:	ENSRNOT00000014399
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
2302369	Scl60	Serum cholesterol level QTL 60	3.13		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	143608201	161165651	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	144358090	157869054	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	151113452	164465185	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	143799107	158428037	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132717196	165560427	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	143069996	166846814	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	151113452	166875058	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	144377876	161317411	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
1298090	Bp155	Blood pressure QTL 155	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	151006154	161165494	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat

RH142253

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	153,774,337 - 153,774,528 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	160,014,624 - 160,014,814	NCBI	Rnor6.0
Rnor_5.0	5	163,734,440 - 163,734,630	UniSTS	Rnor5.0
RGSC_v3.4	5	160,358,789 - 160,358,979	UniSTS	RGSC3.4
Celera	5	152,133,884 - 152,134,074	UniSTS
RH 3.4 Map	14	182.09	UniSTS
Cytogenetic Map	5	q36	UniSTS

AW536047

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	153,763,015 - 153,763,170 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	160,003,302 - 160,003,456	NCBI	Rnor6.0
Rnor_5.0	5	163,723,118 - 163,723,272	UniSTS	Rnor5.0
RGSC_v3.4	5	160,347,467 - 160,347,621	UniSTS	RGSC3.4
Celera	5	152,122,581 - 152,122,735	UniSTS
RH 3.4 Map	5	1052.3	UniSTS
Cytogenetic Map	5	q36	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001012105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014399 ⟹ ENSRNOP00000014399

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	153,753,569 - 153,774,609 (+)	Ensembl
Rnor_6.0 Ensembl	5	159,993,799 - 160,014,895 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088644 ⟹ ENSRNOP00000071596

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	160,009,422 - 160,014,788 (+)	Ensembl

RefSeq Acc Id:

NM_001012105 ⟹ NP_001012105

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,036,482 - 159,057,580 (+)	NCBI
mRatBN7.2	5	153,753,508 - 153,774,609 (+)	NCBI
Rnor_6.0	5	159,993,799 - 160,014,895 (+)	NCBI
Rnor_5.0	5	163,713,685 - 163,734,715 (+)	NCBI
RGSC_v3.4	5	160,337,988 - 160,359,060 (+)	RGD
Celera	5	152,113,183 - 152,134,155 (+)	RGD

Sequence:

show sequence

CTCGGACGAGCGCTGCGCCAGCGACGGAAGTCGCAGCCGGGAAGCCAGCGAGGTCCGTTCCGCCCGACTCTAACATGGCGGCGCCCTTTGTCTACTGTGAAGCGCTGCCCCCGGCCTTCTCGCGGCCG
TGATGCACCTCCATCTGTGGTGGGGTTCGGGACATGGCAGGTGATGAGCTGGAGGAAGAGAGCCGAGCTGGAGTTCTACAGGCACACTGTCTGAGAAGAGAGCCCCCGGCTTTTTGGAGATCTGAGCC
ATGGACTTCCCCCAGCACAGCCAGCGTGTCTTGGAGCAGCTGAACCAGCAGCGGCAAATGGGCCTCCTCTGTGACTGCACCTTTGTGGTGGACGGCGTTGACTTCAAAGCTCACAAGGCGGTGCTGGC
AGCCTGCAGCGAGTACTTCAAGATGCTCTTTGTGGACCAGAAGGATGTGGTGCACCTGGACATCAGTAATGCGGCAGGCCTGGGGCAGGTGCTGGAGTTCATGTACACTGCTAAACTGCACCTTAGCC
CTGAGAACGTGGATGATGTTCTGGCTGTGGCCAGCTTCCTCCAGATGCAGGACATTATCACAGCCTGCCACACCCTGAAGTCCCTCGCTGAGCCCACCAGCACCACTGGGGAGAGTGCAGACGCCTCG
GCCGAGGAAGTCTGTTGTGTTCTGTCTCCAGGAGGAGACAAGCGAGCCAAAGAAGAGAAGGCTGCCGCCACCGTGCTGAGCAGGCTGGACCAAGCAAGAAGCAGTTCATCCGCAGGCCCAGGCAGAGA
GCTCAAAGAGGAGTGGGGTGGTCAGGCAGAGAGTGCATCCAGGGGCGCAGAACAGACGGAGAAGGCCGACGCGCCCCGGGAGCCTCCACCTGTGGAGCTCAAGCCGGACCCCACGAGCAGCATGGCTG
CTGCAGAAGCGGAAGCCTTATCAGAGAGCTCAGAGCAAGAAATGGAAGTGGAACCAGCCAGCAAAGGAGAAGAGGGCCAAGAGGAAGAGGGCCCAGGGCCTGCCACGGTCAAGGAAGAGGGCGTTCAC
CTGGAGAACGGGGAGCCTCCTGAGGAGAATGAAGAGTCTGCGGGCACAGACTCTGGGCACGAGCTTGGCATGGAGGGCCAGAACCTGCGCTCGGGCACCTACGGGGACCGCACTGAGTCCAAGGCTTA
TGGCTCCATCATCCACAAGTGCGAGGACTGCGGGAAGGAGTTCACGCACACAGGGAACTTCAAACGGCACATCCGCATCCACACGGGTGAGAAGCCATTCTCCTGTCGGGAGTGCAGCAAGGCTTTCT
CGGACCCCGCAGCCTGCAAGGCTCACGAGAAGACACACAGCCCGTTGAAACCCTATGGGTGCGAGGAGTGCGGCAAGAGCTACAGGCTCATCAGCCTGCTGAACCTGCACAAGAAGAGGCACTCGGGG
GAGGCGCGCTACCGCTGCGGGGACTGCGGCAAGCTCTTCACCACTTCCGGCAACCTCAAGCGCCACCAGCTGGTACACAGTGGCCAGAAACCCTACCAGTGCGACTACTGTGGCCGTTCATTCTCCGA
CCCCACGTCCAAGATGCGCCACCTGGAGACCCATGACACTGACAAGGAGCACAAGTGCCCTCACTGTGACAAGAAGTTCAACCAGGTGGGGAACCTGAAGGCCCACTTGAAGATCCACATTGCTGACG
GCCCTCTCAAGTGCCGGGAGTGCGGGAAGCAATTCACCACCTCAGGGAACCTCAAGCGGCACCTGCGGATCCACAGCGGGGAGAAGCCGTATGTATGCACCCACTGTCAGCGGCAGTTTGCTGACCCA
GGCGCGCTGCAGCGGCACGTACGGATCCACACGGGTGAGAAGCCGTGTCAGTGCGTGATATGTGGCAAGGCCTTCACCCAAGCCAGCTCCCTCATCGCCCACGTACGCCAGCACACGGGGGAGAAGCC
CTATGTCTGTGAACGCTGTGGCAAGAGATTTGTCCAGTCAAGCCAGTTGGCCAATCACATTCGTCACCATGACAACATCCGCCCACACAAGTGCAGCGTGTGTAGCAAGGCCTTCGTGAATGTGGGGG
ACCTGTCCAAGCACATTATCATCCACACTGGAGAGAAGCCTTACTTATGTGACAAGTGTGGCCGTGGTTTCAACCGGGTAGACAACCTGCGTTCTCACGTAAAGACCGTGCATCAGGGCAAGGCGGGC
ATCAAGATCCTGGAGCCAGAAGAGGGTGGTGAGGTCAGCGTGGTCACTGTGGACGACATGGTCACACTGGCCACTGAGGCACTGGCAGCGACAGCGGTCACTCAGCTCACAGTGGTACCAGTCGGGGC
CGCAGTGACAGCTGATGAGACGGAGGTTCTCAAAGCTGAGATCAGCAAAGCTGTCAAGCAAGTGCAGGAAGAAGATCCCAACACCCACATCCTGTATGCGTGTGATTCCTGTGGGGACAAGTTCCTGG
ATGCCAATAGCCTGGCCCAGCACGTTCGGATCCACACAGCACAGGCACTGGTCATGTTCCAGACGGATGCGGACTTCTACCAGCAGTACGGGCCAGGTGGCGCGTGGCCAGCCGGGCAGATGCTGCAG
GCTGGAGAGCTGGTCTTCCGTCCTAGGGATGGGACTGAGGGCCAGCCCACACTGGCAGAAACTCCACCCACAGCTCCTGATTGCCTACCACCTGCCGAGTAAGCAGGTGGCCCTCTGACTGTTTATTT
AAGGATGGGTGGCACCCCAGGACTCGAATTCCGGTGCTCCTGCCCCATTCCCTAGAGAGAATAAATTTGATTATTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006239303 ⟹ XP_006239365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,036,512 - 159,057,580 (+)	NCBI
mRatBN7.2	5	153,753,513 - 153,774,613 (+)	NCBI
Rnor_6.0	5	159,993,804 - 160,014,899 (+)	NCBI
Rnor_5.0	5	163,713,685 - 163,734,715 (+)	NCBI

Sequence:

show sequence

ACGAGCGCTGCGCCAGCGACGGAAGTCGCAGCCGGGAAGCCAGCGAGGTCCGTTCCGCCCGACTCTAACATGGCGGCGCCCTTTGTCTACTGTGAAGCGCTGCCCCCGGCCTTCTCGCGGCCGTGATG
CACCTCCATCTGTGGTGGGGTTCGGGACATGGCAGGTGATGAGCTGGAGGAAGAGAGCCGAGCTGGAGTTCTACAGGCACACTGTCTGAGAAGAGAGCCCCCGGCTTTTTGGAGATCTGAGCCATGGA
CTTCCCCCAGCACAGCCAGCGTGTCTTGGAGCAGCTGAACCAGCAGCGGCAAATGGGCCTCCTCTGTGACTGCACCTTTGTGGTGGACGGCGTTGACTTCAAAGCTCACAAGGCGGTGCTGGCAGCCT
GCAGCGAGTACTTCAAGATGCTCTTTGTGGACCAGAAGGATGTGGTGCACCTGGACATCAGTAATGCGGCAGGCCTGGGGCAGGTGCTGGAGTTCATGTACACTGCTAAACTGCACCTTAGCCCTGAG
AACGTGGATGATGTTCTGGCTGTGGCCAGCTTCCTCCAGATGCAGGACATTATCACAGCCTGCCACACCCTGAAGTCCCTCGCTGAGCCCACCAGCACCACTGGGGAGAGTGCAGACGCCTCGGCCGA
GGAAGGAGGAGACAAGCGAGCCAAAGAAGAGAAGGCTGCCGCCACCGTGCTGAGCAGGCTGGACCAAGCAAGAAGCAGTTCATCCGCAGGCCCAGGCAGAGAGCTCAAAGAGGAGTGGGGTGGTCAGG
CAGAGAGTGCATCCAGGGGCGCAGAACAGACGGAGAAGGCCGACGCGCCCCGGGAGCCTCCACCTGTGGAGCTCAAGCCGGACCCCACGAGCAGCATGGCTGCTGCAGAAGCGGAAGCCTTATCAGAG
AGCTCAGAGCAAGAAATGGAAGTGGAACCAGCCAGCAAAGGAGAAGAGGGCCAAGAGGAAGAGGGCCCAGGGCCTGCCACGGTCAAGGAAGAGGGCGTTCACCTGGAGAACGGGGAGCCTCCTGAGGA
GAATGAAGAGTCTGCGGGCACAGACTCTGGGCACGAGCTTGGCATGGAGGGCCAGAACCTGCGCTCGGGCACCTACGGGGACCGCACTGAGTCCAAGGCTTATGGCTCCATCATCCACAAGTGCGAGG
ACTGCGGGAAGGAGTTCACGCACACAGGGAACTTCAAACGGCACATCCGCATCCACACGGGTGAGAAGCCATTCTCCTGTCGGGAGTGCAGCAAGGCTTTCTCGGACCCCGCAGCCTGCAAGGCTCAC
GAGAAGACACACAGCCCGTTGAAACCCTATGGGTGCGAGGAGTGCGGCAAGAGCTACAGGCTCATCAGCCTGCTGAACCTGCACAAGAAGAGGCACTCGGGGGAGGCGCGCTACCGCTGCGGGGACTG
CGGCAAGCTCTTCACCACTTCCGGCAACCTCAAGCGCCACCAGCTGGTACACAGTGGCCAGAAACCCTACCAGTGCGACTACTGTGGCCGTTCATTCTCCGACCCCACGTCCAAGATGCGCCACCTGG
AGACCCATGACACTGACAAGGAGCACAAGTGCCCTCACTGTGACAAGAAGTTCAACCAGGTGGGGAACCTGAAGGCCCACTTGAAGATCCACATTGCTGACGGCCCTCTCAAGTGCCGGGAGTGCGGG
AAGCAATTCACCACCTCAGGGAACCTCAAGCGGCACCTGCGGATCCACAGCGGGGAGAAGCCGTATGTATGCACCCACTGTCAGCGGCAGTTTGCTGACCCAGGCGCGCTGCAGCGGCACGTACGGAT
CCACACGGGTGAGAAGCCGTGTCAGTGCGTGATATGTGGCAAGGCCTTCACCCAAGCCAGCTCCCTCATCGCCCACGTACGCCAGCACACGGGGGAGAAGCCCTATGTCTGTGAACGCTGTGGCAAGA
GATTTGTCCAGTCAAGCCAGTTGGCCAATCACATTCGTCACCATGACAACATCCGCCCACACAAGTGCAGCGTGTGTAGCAAGGCCTTCGTGAATGTGGGGGACCTGTCCAAGCACATTATCATCCAC
ACTGGAGAGAAGCCTTACTTATGTGACAAGTGTGGCCGTGGTTTCAACCGGGTAGACAACCTGCGTTCTCACGTAAAGACCGTGCATCAGGGCAAGGCGGGCATCAAGATCCTGGAGCCAGAAGAGGG
TGGTGAGGTCAGCGTGGTCACTGTGGACGACATGGTCACACTGGCCACTGAGGCACTGGCAGCGACAGCGGTCACTCAGCTCACAGTGGTACCAGTCGGGGCCGCAGTGACAGCTGATGAGACGGAGG
TTCTCAAAGCTGAGATCAGCAAAGCTGTCAAGCAAGTGCAGGAAGAAGATCCCAACACCCACATCCTGTATGCGTGTGATTCCTGTGGGGACAAGTTCCTGGATGCCAATAGCCTGGCCCAGCACGTT
CGGATCCACACAGCACAGGCACTGGTCATGTTCCAGACGGATGCGGACTTCTACCAGCAGTACGGGCCAGGTGGCGCGTGGCCAGCCGGGCAGATGCTGCAGGCTGGAGAGCTGGTCTTCCGTCCTAG
GGATGGGACTGAGGGCCAGCCCACACTGGCAGAAACTCCACCCACAGCTCCTGATTGCCTACCACCTGCCGAGTAAGCAGGTGGCCCTCTGACTGTTTATTTAAGGATGGGTGGCACCCCAGGACTCG
AATTCCGGTGCTCCTGCCCCATTCCCTAGAGAGAATAAATTTGATTATTTTCTAATGTC

hide sequence

RefSeq Acc Id:

XM_039110079 ⟹ XP_038966007

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,036,512 - 159,057,580 (+)	NCBI
mRatBN7.2	5	153,753,513 - 153,774,613 (+)	NCBI

RefSeq Acc Id:

XM_039110080 ⟹ XP_038966008

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,036,512 - 159,057,580 (+)	NCBI
mRatBN7.2	5	153,753,521 - 153,774,613 (+)	NCBI

RefSeq Acc Id:

XM_063287815 ⟹ XP_063143885

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,036,512 - 159,057,580 (+)	NCBI

RefSeq Acc Id:

XM_063287816 ⟹ XP_063143886

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,036,512 - 159,057,580 (+)	NCBI

RefSeq Acc Id:

XM_063287817 ⟹ XP_063143887

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,036,512 - 159,057,580 (+)	NCBI

RefSeq Acc Id:

XM_063287818 ⟹ XP_063143888

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,036,512 - 159,057,580 (+)	NCBI

RefSeq Acc Id:

XM_063287819 ⟹ XP_063143889

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,036,512 - 159,057,580 (+)	NCBI


Protein RefSeqs	NP_001012105	(Get FASTA)	NCBI Sequence Viewer
	XP_006239365	(Get FASTA)	NCBI Sequence Viewer
	XP_038966007	(Get FASTA)	NCBI Sequence Viewer
	XP_038966008	(Get FASTA)	NCBI Sequence Viewer
	XP_063143885	(Get FASTA)	NCBI Sequence Viewer
	XP_063143886	(Get FASTA)	NCBI Sequence Viewer
	XP_063143887	(Get FASTA)	NCBI Sequence Viewer
	XP_063143888	(Get FASTA)	NCBI Sequence Viewer
	XP_063143889	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83577	(Get FASTA)	NCBI Sequence Viewer
	EDL80991	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014399
	ENSRNOP00000014399.5
	ENSRNOP00000102698

RefSeq Acc Id:

NP_001012105 ⟸ NM_001012105

- UniProtKB:

Q5XIU3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDFPQHSQRVLEQLNQQRQMGLLCDCTFVVDGVDFKAHKAVLAACSEYFKMLFVDQKDVVHLDISNAAGLGQVLEFMYTAKLHLSPENVDDVLAVASFLQMQDIITACHTLKSLAEPTSTTGESADAS
AEEVCCVLSPGGDKRAKEEKAAATVLSRLDQARSSSSAGPGRELKEEWGGQAESASRGAEQTEKADAPREPPPVELKPDPTSSMAAAEAEALSESSEQEMEVEPASKGEEGQEEEGPGPATVKEEGVH
LENGEPPEENEESAGTDSGHELGMEGQNLRSGTYGDRTESKAYGSIIHKCEDCGKEFTHTGNFKRHIRIHTGEKPFSCRECSKAFSDPAACKAHEKTHSPLKPYGCEECGKSYRLISLLNLHKKRHSG
EARYRCGDCGKLFTTSGNLKRHQLVHSGQKPYQCDYCGRSFSDPTSKMRHLETHDTDKEHKCPHCDKKFNQVGNLKAHLKIHIADGPLKCRECGKQFTTSGNLKRHLRIHSGEKPYVCTHCQRQFADP
GALQRHVRIHTGEKPCQCVICGKAFTQASSLIAHVRQHTGEKPYVCERCGKRFVQSSQLANHIRHHDNIRPHKCSVCSKAFVNVGDLSKHIIIHTGEKPYLCDKCGRGFNRVDNLRSHVKTVHQGKAG
IKILEPEEGGEVSVVTVDDMVTLATEALAATAVTQLTVVPVGAAVTADETEVLKAEISKAVKQVQEEDPNTHILYACDSCGDKFLDANSLAQHVRIHTAQALVMFQTDADFYQQYGPGGAWPAGQMLQ
AGELVFRPRDGTEGQPTLAETPPTAPDCLPPAE

hide sequence

RefSeq Acc Id:	XP_006239365 ⟸ XM_006239303
- Peptide Label:	isoform X2
- UniProtKB:	A6ITU0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDFPQHSQRVLEQLNQQRQMGLLCDCTFVVDGVDFKAHKAVLAACSEYFKMLFVDQKDVVHLDI SNAAGLGQVLEFMYTAKLHLSPENVDDVLAVASFLQMQDIITACHTLKSLAEPTSTTGESADASAEEGGDKRAKEEKAAATVLSRLDQARSSSSAGPGRELKEEWGGQAESASRGAEQTEKADAPREP PPVELKPDPTSSMAAAEAEALSESSEQEMEVEPASKGEEGQEEEGPGPATVKEEGVHLENGEPPEENEESAGTDSGHELGMEGQNLRSGTYGDRTESKAYGSIIHKCEDCGKEFTHTGNFKRHIRIHT GEKPFSCRECSKAFSDPAACKAHEKTHSPLKPYGCEECGKSYRLISLLNLHKKRHSGEARYRCGDCGKLFTTSGNLKRHQLVHSGQKPYQCDYCGRSFSDPTSKMRHLETHDTDKEHKCPHCDKKFNQ VGNLKAHLKIHIADGPLKCRECGKQFTTSGNLKRHLRIHSGEKPYVCTHCQRQFADPGALQRHVRIHTGEKPCQCVICGKAFTQASSLIAHVRQHTGEKPYVCERCGKRFVQSSQLANHIRHHDNIRP HKCSVCSKAFVNVGDLSKHIIIHTGEKPYLCDKCGRGFNRVDNLRSHVKTVHQGKAGIKILEPEEGGEVSVVTVDDMVTLATEALAATAVTQLTVVPVGAAVTADETEVLKAEISKAVKQVQEEDPNT HILYACDSCGDKFLDANSLAQHVRIHTAQALVMFQTDADFYQQYGPGGAWPAGQMLQAGELVFRPRDGTEGQPTLAETPPTAPDCLPPAE hide sequence

Ensembl Acc Id:

ENSRNOP00000014399 ⟸ ENSRNOT00000014399

Ensembl Acc Id:

ENSRNOP00000071596 ⟸ ENSRNOT00000088644

RefSeq Acc Id:	XP_038966007 ⟸ XM_039110079
- Peptide Label:	isoform X1
- UniProtKB:	F7FQA4 (UniProtKB/TrEMBL)

Protein Domains

BTB C2H2-type

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIU3-F1-model_v2	AlphaFold	Q5XIU3	1-801	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13694227

Promoter ID:

EPDNEW_R4751

Type:

initiation region

Name:

Zbtb17_1

Description:

zinc finger and BTB domain containing 17

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	159,993,848 - 159,993,908	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-39342	BioCyc
Ensembl Genes	ENSRNOG00000010436	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014399	ENTREZGENE
	ENSRNOT00000014399.8	UniProtKB/TrEMBL
	ENSRNOT00000152797	ENTREZGENE
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
	Potassium Channel Kv1.1, Chain A	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7113925	IMAGE-MGC_LOAD
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:313666	UniProtKB/TrEMBL
MGC_CLONE	MGC:93950	IMAGE-MGC_LOAD
NCBI Gene	313666	ENTREZGENE
PANTHER	ZINC FINGER AND BTB DOMAIN-CONTAINING	UniProtKB/TrEMBL
	ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 17	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zbtb17	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010436	RatGTEx
SMART	BTB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A6ITU0	ENTREZGENE, UniProtKB/TrEMBL
	F7FQA4	ENTREZGENE, UniProtKB/TrEMBL
	Q5XIU3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Zbtb17	zinc finger and BTB domain containing 17	Zfp100	zinc finger protein 100	Symbol and Name updated	1299863	APPROVED
2005-12-06	Zfp100	zinc finger protein 100	Zfp100_predicted	zinc finger protein 100 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Zfp100_predicted	zinc finger protein 100 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Annotations - KEGG (archival)