Rad18 (RAD18 E3 ubiquitin protein ligase) - Rat Genome Database

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Gene: Rad18 (RAD18 E3 ubiquitin protein ligase) Rattus norvegicus
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Symbol: Rad18
Name: RAD18 E3 ubiquitin protein ligase
RGD ID: 1306993
Description: Predicted to enable several functions, including Y-form DNA binding activity; identical protein binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of chromosome segregation; postreplication repair; and protein monoubiquitination. Predicted to act upstream of or within several processes, including negative regulation of DNA recombination; protein autoubiquitination; and response to UV. Predicted to be located in centrosome; chromosome; and nucleus. Predicted to be part of Rad6-Rad18 complex. Predicted to be active in nucleus. Orthologous to human RAD18 (RAD18 E3 ubiquitin protein ligase); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: E3 ubiquitin-protein ligase RAD18; LOC362412; MGC156682; RAD18 homolog; RAD18 homolog (S. cerevisiae)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84147,291,463 - 147,376,904 (-)NCBIGRCr8
mRatBN7.24145,735,654 - 145,821,102 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4145,735,654 - 145,821,069 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4151,128,531 - 151,213,335 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04146,909,335 - 146,994,147 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04145,530,588 - 145,615,388 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04144,537,329 - 144,620,606 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4144,536,729 - 144,620,731 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04207,837,216 - 207,920,089 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44148,452,664 - 148,543,743 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14148,697,688 - 148,788,534 (-)NCBI
Celera4134,304,974 - 134,388,922 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rad18RatAtrioventricular Septal Defect 2  ISORAD18 (Homo sapiens)8554872ClinVar Annotator: match by term: Atrioventricular septal defect more ...ClinVarPMID:28492532
Rad18Ratlong QT syndrome  ISORAD18 (Homo sapiens)8554872ClinVar Annotator: match by term: Long QT syndromeClinVarPMID:28492532
Rad18RatNeurodevelopmental Disorders  ISORAD18 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rad18Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of RAD18 mRNA]CTDPMID:31150632
Rad18Rat1,2-dibromoethane decreases expressionISORad18 (Mus musculus)6480464Ethylene Dibromide results in decreased expression of RAD18 proteinCTDPMID:22434383
Rad18Rat1,2-dichloroethane decreases expressionISORad18 (Mus musculus)6480464ethylene dichloride results in decreased expression of RAD18 mRNACTDPMID:28960355
Rad18Rat1,2-dimethylhydrazine increases expressionISORad18 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of RAD18 mRNACTDPMID:22206623
Rad18Rat1H-pyrazole increases expressionISORad18 (Mus musculus)6480464pyrazole results in increased expression of RAD18 mRNACTDPMID:17945193
Rad18Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORad18 (Mus musculus)6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to RAD18 promoter]CTDPMID:19654925
Rad18Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of RAD18 mRNACTDPMID:32109520
Rad18Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORad18 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of RAD18 mRNACTDPMID:21570461
Rad18Rat2-nitrotoluene decreases expressionISORad18 (Mus musculus)64804642-nitrotoluene results in decreased expression of RAD18 proteinCTDPMID:22434383
Rad18Rat4-hydroxyphenyl retinamide increases expressionISORad18 (Mus musculus)6480464Fenretinide results in increased expression of RAD18 mRNACTDPMID:28973697
Rad18Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of RAD18 mRNACTDPMID:30047161
Rad18Ratacetamide increases expressionEXP 6480464acetamide results in increased expression of RAD18 mRNACTDPMID:31881176
Rad18Rataflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of RAD18 mRNACTDPMID:23630614
Rad18Ratall-trans-retinoic acid decreases expressionISORAD18 (Homo sapiens)6480464Tretinoin results in decreased expression of RAD18 mRNACTDPMID:33167477
Rad18Ratamitrole increases expressionEXP 6480464Amitrole results in increased expression of RAD18 mRNACTDPMID:30047161
Rad18Ratarsane decreases expressionISORad18 (Mus musculus)6480464Arsenic results in decreased expression of RAD18 mRNACTDPMID:22641096
Rad18Ratarsenic atom decreases expressionISORad18 (Mus musculus)6480464Arsenic results in decreased expression of RAD18 mRNACTDPMID:22641096
Rad18Ratarsenite(3-) decreases expressionISORad18 (Mus musculus)6480464arsenite results in decreased expression of RAD18 mRNACTDPMID:18929588
Rad18Ratavobenzone increases expressionISORAD18 (Homo sapiens)6480464avobenzone results in increased expression of RAD18 mRNACTDPMID:31016361
Rad18Ratbelinostat decreases expressionISORad18 (Mus musculus)6480464belinostat results in decreased expression of RAD18 mRNACTDPMID:29733868

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Biological Process
1 to 20 of 21 rows

  
Object Symbol
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Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Rad18Ratbiological_process  ND 159840706/2009: no relevant rat dataRGD 
Rad18RatDNA damage response involved_inISORAD18 (Homo sapiens)1624291 PMID:22036607 and PMID:25931565RGDPMID:22036607 and PMID:25931565
Rad18RatDNA damage response involved_inIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18RatDNA damage response involved_inIEAUniProtKB-KW:KW-02271600115GO_REF:0000043UniProtGO_REF:0000043
Rad18RatDNA damage response acts_upstream_of_or_withinISORad18 (Mus musculus)1624291MGI:3835812 PMID:12509447RGDPMID:12509447
Rad18RatDNA damage response involved_inIEAARBA:ARBA000262711600115GO_REF:0000117UniProtGO_REF:0000117
Rad18RatDNA damage response acts_upstream_of_or_withinISORAD18 (Homo sapiens)1624291 PMID:25023518RGDPMID:25023518
Rad18RatDNA repair involved_inIEAInterPro:IPR0066421600115GO_REF:0000002InterProGO_REF:0000002
Rad18RatDNA repair involved_inIEAUniProtKB-KW:KW-02341600115GO_REF:0000043UniProtGO_REF:0000043
Rad18Ratnegative regulation of DNA recombination acts_upstream_of_or_withinISORad18 (Mus musculus)1624291MGI:3835812 PMID:12509447RGDPMID:12509447
Rad18Ratpositive regulation of chromosome segregation involved_inISORAD18 (Homo sapiens)1624291 PMID:25931565RGDPMID:25931565
Rad18Ratpositive regulation of chromosome segregation involved_inIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18Ratpostreplication repair involved_inIBAPANTHER:PTN001020335 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rad18Ratpostreplication repair involved_inIEAInterPro:IPR0395771600115GO_REF:0000002InterProGO_REF:0000002
Rad18Ratprotein autoubiquitination acts_upstream_of_or_withinISORAD18 (Homo sapiens)1624291 PMID:25023518RGDPMID:25023518
Rad18Ratprotein autoubiquitination acts_upstream_of_or_withinIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18Ratprotein monoubiquitination involved_inIEAInterPro:IPR0395771600115GO_REF:0000002InterProGO_REF:0000002
Rad18Ratprotein monoubiquitination involved_inIBAPANTHER:PTN001020335 and SGD:S0000006621600115GO_REF:0000033GO_CentralGO_REF:0000033
Rad18Ratprotein ubiquitination involved_inIEAUniPathway:UPA001431600115GO_REF:0000041UniProtGO_REF:0000041
Rad18Ratresponse to UV acts_upstream_of_or_withinISORad18 (Mus musculus)1624291MGI:3835812 PMID:12509447RGDPMID:12509447
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Cellular Component
1 to 20 of 21 rows

  
Object Symbol
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Evidence
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Reference
Notes
Source
Original Reference(s)
Rad18Ratcentrosome located_inISORAD18 (Homo sapiens)1624291 PMID:15632077RGDPMID:15632077
Rad18Ratcentrosome located_inIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18Ratchromatin located_inISORad18 (Mus musculus)1624291 PMID:15657431RGDPMID:15657431
Rad18Ratmale germ cell nucleus located_inISORad18 (Mus musculus)1624291 PMID:19068231RGDPMID:19068231
Rad18Ratnuclear body located_inIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18Ratnuclear body located_inISORAD18 (Homo sapiens)1624291 RGDGO_REF:0000052
Rad18Ratnuclear inclusion body located_inISORAD18 (Homo sapiens)1624291 PMID:22036607RGDPMID:22036607
Rad18Ratnuclear inclusion body located_inIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18Ratnucleoplasm located_inISORAD18 (Homo sapiens)1624291 RGDGO_REF:0000052
Rad18Ratnucleoplasm located_inIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18Ratnucleus located_inISORAD18 (Homo sapiens)1624291 PMID:15632077 more ...RGDPMID:15632077 more ...
Rad18Ratnucleus located_inISORad18 (Mus musculus)1624291 PMID:11013078RGDPMID:11013078
Rad18Ratnucleus is_active_inIBAMGI:1890476 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rad18Ratnucleus located_inIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Rad18RatRad6-Rad18 complex part_ofIBAPANTHER:PTN001020335 and SGD:S0000006621600115GO_REF:0000033GO_CentralGO_REF:0000033
Rad18Ratreplication fork located_inISORAD18 (Homo sapiens)1624291 PMID:18363965RGDPMID:18363965
Rad18Ratreplication fork located_inIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18Ratsite of double-strand break located_inISORAD18 (Homo sapiens)1624291 PMID:25931565RGDPMID:25931565
Rad18Ratsite of double-strand break located_inIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function
1 to 18 of 18 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Rad18RatDNA binding enablesIEAUniProtKB-KW:KW-02381600115GO_REF:0000043UniProtGO_REF:0000043
Rad18RatDNA binding enablesIEAInterPro:IPR0066421600115GO_REF:0000002InterProGO_REF:0000002
Rad18Ratidentical protein binding enablesISORAD18 (Homo sapiens)1624291 PMID:25023518RGDPMID:25023518
Rad18Ratidentical protein binding enablesIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Rad18Ratpolyubiquitin modification-dependent protein binding enablesISORAD18 (Homo sapiens)1624291 PMID:22742833RGDPMID:22742833
Rad18Ratpolyubiquitin modification-dependent protein binding enablesIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18Ratprotein binding enablesISORAD18 (Homo sapiens)1624291UniProtKB:C0HM98 more ...RGDPMID:18316726 more ...
Rad18Ratprotein binding enablesISORad18 (Mus musculus)1624291PR:P63147 more ...RGDPMID:12509447
Rad18Ratprotein-containing complex binding enablesISORAD18 (Homo sapiens)1624291UniProtKB:Q8IY18 more ...RGDPMID:25931565
Rad18Ratprotein-containing complex binding enablesIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18Ratsingle-stranded DNA binding enablesIEAInterPro:IPR0395771600115GO_REF:0000002InterProGO_REF:0000002
Rad18Ratubiquitin protein ligase activity enablesIEAInterPro:IPR0395771600115GO_REF:0000002InterProGO_REF:0000002
Rad18Ratubiquitin protein ligase binding enablesISORAD18 (Homo sapiens)1624291UniProtKB:P49459 more ...RGDPMID:10908344 and PMID:18363965
Rad18Ratubiquitin protein ligase binding enablesIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18RatY-form DNA binding enablesISORAD18 (Homo sapiens)1624291 PMID:18363965RGDPMID:18363965
Rad18RatY-form DNA binding enablesIEAUniProtKB:Q9NS91 and ensembl:ENSP000002649261600115GO_REF:0000107EnsemblGO_REF:0000107
Rad18Ratzinc ion binding enablesIEAUniProtKB-KW:KW-08631600115GO_REF:0000043UniProtGO_REF:0000043
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#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Formation of D-serine from L-phosphoserine in brain synaptosomes. Wood PL, etal., J Neurochem. 1996 Oct;67(4):1485-90.
PMID:10908344   PMID:11013078   PMID:12477932   PMID:12509447   PMID:15383616   PMID:15632077   PMID:15657431   PMID:17970741   PMID:18363965   PMID:19068231   PMID:22036607   PMID:22742833  
PMID:25023518   PMID:25931565  



Rad18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84147,291,463 - 147,376,904 (-)NCBIGRCr8
mRatBN7.24145,735,654 - 145,821,102 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4145,735,654 - 145,821,069 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4151,128,531 - 151,213,335 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04146,909,335 - 146,994,147 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04145,530,588 - 145,615,388 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04144,537,329 - 144,620,606 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4144,536,729 - 144,620,731 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04207,837,216 - 207,920,089 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44148,452,664 - 148,543,743 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14148,697,688 - 148,788,534 (-)NCBI
Celera4134,304,974 - 134,388,922 (-)NCBICelera
Cytogenetic Map4q42NCBI
RAD18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3838,877,075 - 8,963,472 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl38,775,402 - 8,963,773 (-)EnsemblGRCh38hg38GRCh38
GRCh3738,918,759 - 9,005,156 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3638,896,560 - 8,980,146 (-)NCBINCBI36Build 36hg18NCBI36
Build 3438,896,560 - 8,980,146NCBI
Celera38,853,629 - 8,939,882 (-)NCBICelera
Cytogenetic Map3p25.3NCBI
HuRef38,853,076 - 8,939,344 (-)NCBIHuRef
CHM1_138,869,168 - 8,955,418 (-)NCBICHM1_1
T2T-CHM13v2.038,868,283 - 8,960,543 (-)NCBIT2T-CHM13v2.0
Rad18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396112,596,812 - 112,673,650 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6112,596,811 - 112,673,647 (-)EnsemblGRCm39 Ensembl
GRCm386112,619,851 - 112,696,691 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6112,619,850 - 112,696,686 (-)EnsemblGRCm38mm10GRCm38
MGSCv376112,569,845 - 112,646,664 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366112,586,582 - 112,662,371 (-)NCBIMGSCv36mm8
Celera6114,452,215 - 114,522,098 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map652.42NCBI
Rad18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955561464,343 - 599,789 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955561463,586 - 602,354 (-)NCBIChiLan1.0ChiLan1.0
RAD18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v228,891,471 - 8,977,466 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan138,896,229 - 8,982,224 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v038,832,910 - 8,918,067 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.139,076,500 - 9,161,585 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl39,076,500 - 9,161,585 (-)Ensemblpanpan1.1panPan2
RAD18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1209,163,322 - 9,271,224 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl209,163,428 - 9,263,730 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha209,195,146 - 9,302,722 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0209,192,202 - 9,299,425 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl209,191,837 - 9,291,927 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1208,913,303 - 9,020,670 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0209,259,143 - 9,366,272 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0209,232,350 - 9,339,667 (+)NCBIUU_Cfam_GSD_1.0
Rad18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494214,776,226 - 14,879,342 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366024,030,459 - 4,081,931 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366024,030,353 - 4,134,119 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAD18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1365,253,424 - 65,359,174 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11365,253,416 - 65,359,506 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RAD18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12244,878,015 - 44,960,610 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2244,875,292 - 44,960,089 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041121,606,379 - 121,689,362 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rad18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247313,597,779 - 3,697,138 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247313,510,430 - 3,698,859 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Rad18
422 total Variants

Predicted Target Of
Summary Value
Count of predictions:576
Count of miRNA genes:253
Interacting mature miRNAs:322
Transcripts:ENSRNOT00000066468
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 59 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat

1 to 10 of 59 rows
AA800878  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24145,735,817 - 145,736,047 (+)MAPPERmRatBN7.2
Rnor_6.04144,536,864 - 144,537,093NCBIRnor6.0
Rnor_5.04207,836,751 - 207,836,980UniSTSRnor5.0
RGSC_v3.44148,452,198 - 148,452,427UniSTSRGSC3.4
Celera4134,304,508 - 134,304,737UniSTS
RH 3.4 Map4937.2UniSTS
Cytogenetic Map4q42UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000066468   ⟹   ENSRNOP00000063400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4145,735,654 - 145,821,069 (-)Ensembl
Rnor_6.0 Ensembl4144,536,729 - 144,620,731 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099439   ⟹   ENSRNOP00000076533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4145,735,654 - 145,821,069 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115978   ⟹   ENSRNOP00000094440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4145,735,676 - 145,821,067 (-)Ensembl
RefSeq Acc Id: NM_001077673   ⟹   NP_001071141
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84147,292,093 - 147,376,869 (-)NCBI
mRatBN7.24145,736,284 - 145,821,065 (-)NCBI
Rnor_6.04144,537,330 - 144,620,584 (-)NCBI
Rnor_5.04207,837,216 - 207,920,089 (-)NCBI
RGSC_v3.44148,452,664 - 148,543,743 (-)RGD
Celera4134,304,974 - 134,388,922 (-)RGD
Sequence:
RefSeq Acc Id: XM_006237036   ⟹   XP_006237098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84147,291,463 - 147,376,904 (-)NCBI
mRatBN7.24145,735,654 - 145,821,102 (-)NCBI
Rnor_6.04144,537,329 - 144,620,606 (-)NCBI
Rnor_5.04207,837,216 - 207,920,089 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237037   ⟹   XP_006237099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84147,291,463 - 147,376,904 (-)NCBI
mRatBN7.24145,735,654 - 145,821,102 (-)NCBI
Rnor_6.04144,537,339 - 144,620,606 (-)NCBI
Rnor_5.04207,837,216 - 207,920,089 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063286290   ⟹   XP_063142360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84147,291,463 - 147,376,904 (-)NCBI
RefSeq Acc Id: NP_001071141   ⟸   NM_001077673
- UniProtKB: A0JPN0 (UniProtKB/TrEMBL),   A0A8I5YBD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237098   ⟸   XM_006237036
- Peptide Label: isoform X1
- UniProtKB: A0A8I5YBD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237099   ⟸   XM_006237037
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GKR5 (UniProtKB/TrEMBL),   A6IBN3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063400   ⟸   ENSRNOT00000066468
Ensembl Acc Id: ENSRNOP00000076533   ⟸   ENSRNOT00000099439
RING-type   SAP   UBZ4-type

Name Modeler Protein Id AA Range Protein Structure
AF-A0JPN0-F1-model_v2 AlphaFold A0JPN0 1-494 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 40 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-43418 BioCyc
Ensembl Genes ENSRNOG00000005907 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066468 ENTREZGENE
  ENSRNOT00000066468.3 UniProtKB/TrEMBL
  ENSRNOT00000099439 ENTREZGENE
  ENSRNOT00000099439.1 UniProtKB/TrEMBL
  ENSRNOT00000115978 ENTREZGENE
  ENSRNOT00000115978.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.720.30 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8366167 IMAGE-MGC_LOAD
InterPro Rad18 UniProtKB/TrEMBL
  SAP_DNA-bd UniProtKB/TrEMBL
  SAP_dom_sf UniProtKB/TrEMBL
  Znf_Rad18_put UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report rno:362412 UniProtKB/TrEMBL
MGC_CLONE MGC:156682 IMAGE-MGC_LOAD
NCBI Gene 362412 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RAD18 UniProtKB/TrEMBL
  PTHR14134 UniProtKB/TrEMBL
Pfam SAP UniProtKB/TrEMBL
  zf-C3HC4_2 UniProtKB/TrEMBL
PhenoGen Rad18 PhenoGen
PROSITE SAP UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
  ZF_UBZ4 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005907 RatGTEx
SMART RING UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
  ZnF_Rad18 UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8I5YBD2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKR5 ENTREZGENE, UniProtKB/TrEMBL
  A0JPN0 ENTREZGENE, UniProtKB/TrEMBL
  A6IBN3 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 40 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-06 Rad18  RAD18 E3 ubiquitin protein ligase  Rad18  RAD18 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Rad18  RAD18 homolog (S. cerevisiae)   Rad18_predicted  RAD18 homolog (S. cerevisiae) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rad18_predicted  RAD18 homolog (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED