Kcnv2 (potassium voltage-gated channel modifier subfamily V member 2) - Rat Genome Database

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Gene: Kcnv2 (potassium voltage-gated channel modifier subfamily V member 2) Chinchilla lanigera
Analyze
Symbol: Kcnv2
Name: potassium voltage-gated channel modifier subfamily V member 2
RGD ID: 8964948
Description: ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog); cone dystrophy (ortholog); cone-rod dystrophy 14 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: potassium channel, subfamily V, member 2; potassium channel, voltage gated modifier subfamily V, member 2; potassium voltage-gated channel subfamily V member 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554347,122,287 - 7,133,737 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554347,122,287 - 7,133,737 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kcnv2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554347,122,287 - 7,133,737 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554347,122,287 - 7,133,737 (+)NCBIChiLan1.0ChiLan1.0
KCNV2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3892,717,510 - 2,730,037 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl92,717,510 - 2,730,037 (+)EnsemblGRCh38hg38GRCh38
GRCh3792,717,510 - 2,730,037 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3692,707,526 - 2,719,757 (+)NCBINCBI36Build 36hg18NCBI36
Build 3492,707,525 - 2,719,757NCBI
Celera92,635,779 - 2,648,010 (+)NCBICelera
Cytogenetic Map9p24.2NCBI
HuRef92,672,590 - 2,685,127 (+)NCBIHuRef
CHM1_192,717,855 - 2,730,366 (+)NCBICHM1_1
T2T-CHM13v2.092,720,267 - 2,732,772 (+)NCBIT2T-CHM13v2.0
Kcnv2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391927,299,461 - 27,314,579 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1927,299,988 - 27,314,579 (+)EnsemblGRCm39 Ensembl
GRCm381927,322,061 - 27,337,179 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1927,322,588 - 27,337,179 (+)EnsemblGRCm38mm10GRCm38
MGSCv371927,397,109 - 27,411,669 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361927,389,716 - 27,404,276 (+)NCBIMGSCv36mm8
Celera1928,106,770 - 28,121,318 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1921.88NCBI
Kcnv2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81234,409,067 - 234,485,894 (+)NCBIGRCr8
mRatBN7.21224,999,552 - 225,014,062 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1224,999,552 - 225,014,062 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,405,911 - 233,420,387 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01240,336,034 - 240,350,509 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,156,760 - 233,171,236 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01245,396,880 - 245,475,011 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1245,396,989 - 245,416,531 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01252,646,135 - 252,663,285 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41230,834,883 - 230,849,285 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11230,999,015 - 231,009,903 (+)NCBI
Celera1222,175,534 - 222,189,894 (+)NCBICelera
Cytogenetic Map1q52NCBI
KCNV2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211121,843,367 - 121,868,053 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19121,858,914 - 121,873,997 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v092,523,388 - 2,537,945 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.192,717,407 - 2,729,494 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl92,717,407 - 2,729,494 (+)Ensemblpanpan1.1panPan2
KCNV2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1191,338,401 - 91,350,537 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl191,338,401 - 91,349,967 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha191,806,312 - 91,818,452 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0191,883,006 - 91,895,160 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl191,883,006 - 91,894,914 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1191,530,260 - 91,542,405 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0191,242,294 - 91,254,438 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0192,017,037 - 92,029,184 (+)NCBIUU_Cfam_GSD_1.0
Kcnv2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947138,840,340 - 138,852,434 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365032,319,617 - 2,332,971 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365032,320,570 - 2,332,833 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNV2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,100,447 - 219,112,905 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,099,858 - 219,113,194 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21244,922,598 - 244,935,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNV2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11276,825,875 - 76,838,967 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1276,826,283 - 76,837,774 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603865,165,788 - 65,177,825 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnv2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247367,407,367 - 7,418,577 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247367,405,697 - 7,419,364 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005388613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01032227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCLAT00000019491   ⟹   ENSCLAP00000019303
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554347,122,287 - 7,133,737 (+)Ensembl
RefSeq Acc Id: XM_005388613   ⟹   XP_005388670
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554347,122,287 - 7,133,737 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388670 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019303
  ENSCLAP00000019303.1
RefSeq Acc Id: XP_005388670   ⟸   XM_005388613
- UniProtKB: A0A8C2VR64 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000019303   ⟸   ENSCLAT00000019491
Protein Domains
Ion transport   Potassium channel tetramerisation-type BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013226 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019491 ENTREZGENE
  ENSCLAT00000019491.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv9 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene Kcnv2 ENTREZGENE
PANTHER POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY V MEMBER 2 UniProtKB/TrEMBL
  PTHR11537 UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS KCHANNEL UniProtKB/TrEMBL
  KV9CHANNEL UniProtKB/TrEMBL
  KVCHANNEL UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A8C2VR64 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Kcnv2  potassium voltage-gated channel modifier subfamily V member 2    potassium channel, voltage gated modifier subfamily V, member 2  Symbol and/or name change 5135510 APPROVED
2015-08-25 Kcnv2  potassium channel, voltage gated modifier subfamily V, member 2    potassium channel, subfamily V, member 2  Symbol and/or name change 5135510 APPROVED