Ect2l (epithelial cell transforming 2 like) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ect2l (epithelial cell transforming 2 like) Chinchilla lanigera
Analyze
Symbol: Ect2l
Name: epithelial cell transforming 2 like
RGD ID: 8900877
Description: ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: epithelial cell transforming sequence 2 oncogene-like; epithelial cell-transforming sequence 2 oncogene-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543620,754,934 - 20,843,015 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,754,395 - 20,843,015 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ect2lChinchillaFamilial Behcet-Like Autoinflammatory Syndrome  ISOECT2L (Homo sapiens)8554872ClinVar Annotator: match by term: Autoinflammatory syndrome more ...ClinVarPMID:25741868


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:22301074  



Ect2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543620,754,934 - 20,843,015 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,754,395 - 20,843,015 (-)NCBIChiLan1.0ChiLan1.0
ECT2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386138,796,087 - 138,904,070 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6138,795,911 - 138,904,070 (+)EnsemblGRCh38hg38GRCh38
GRCh376139,117,224 - 139,225,207 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366139,176,002 - 139,266,900 (+)NCBINCBI36Build 36hg18NCBI36
Celera6139,857,349 - 139,965,590 (+)NCBICelera
Cytogenetic Map6q24.1NCBI
HuRef6136,678,549 - 136,786,853 (+)NCBIHuRef
CHM1_16139,380,248 - 139,488,189 (+)NCBICHM1_1
T2T-CHM13v2.06139,984,635 - 140,092,615 (+)NCBIT2T-CHM13v2.0
Ect2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391018,004,123 - 18,086,575 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1018,004,651 - 18,086,638 (-)EnsemblGRCm39 Ensembl
GRCm381018,128,375 - 18,210,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1018,128,903 - 18,210,890 (-)EnsemblGRCm38mm10GRCm38
MGSCv371017,848,828 - 17,921,159 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361017,848,828 - 17,921,159 (-)NCBIMGSCv36mm8
Celera1018,027,165 - 18,098,726 (-)NCBICelera
Cytogenetic Map10A3NCBI
cM Map107.47NCBI
Ect2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,594,726 - 14,677,321 (-)NCBIGRCr8
mRatBN7.2112,775,705 - 12,857,538 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,778,922 - 12,855,449 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0113,301,918 - 13,372,928 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,302,256 - 13,341,952 (-)EnsemblRnor6.0rn6Rnor6.0
Celera111,234,398 - 11,301,711 (-)NCBICelera
Cytogenetic Map1p12NCBI
ECT2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25158,762,241 - 158,868,220 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16156,659,827 - 156,766,511 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06136,556,048 - 136,662,697 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16140,641,624 - 140,747,937 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6140,641,624 - 140,748,058 (+)Ensemblpanpan1.1panPan2
ECT2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1131,069,668 - 31,140,358 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl131,069,732 - 31,139,325 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha131,937,114 - 32,015,831 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0131,223,419 - 31,303,208 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl131,232,949 - 31,300,641 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1131,110,418 - 31,179,588 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0130,982,991 - 31,061,831 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0131,292,668 - 31,372,882 (+)NCBIUU_Cfam_GSD_1.0
Ect2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946126,111,158 - 126,199,922 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365605,906,220 - 5,978,849 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365605,906,173 - 5,979,080 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ECT2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,566,954 - 25,644,277 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,566,955 - 25,644,289 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,702,374 - 28,779,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ECT2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11334,489,321 - 34,594,872 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1334,491,222 - 34,576,744 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660406,660,068 - 6,768,969 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ect2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475315,059,107 - 15,150,617 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475315,058,307 - 15,153,975 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.





1 to 17 of 17 rows
RefSeq Transcripts XM_013516618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001234967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01034038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01034039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01034040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01034041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01223049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 17 of 17 rows

Ensembl Acc Id: ENSCLAT00000012187   ⟹   ENSCLAP00000012046
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543620,754,934 - 20,843,015 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000012188   ⟹   ENSCLAP00000012047
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543620,756,822 - 20,843,015 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000012189   ⟹   ENSCLAP00000012048
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543620,767,224 - 20,843,015 (-)Ensembl
RefSeq Acc Id: XM_013516618   ⟹   XP_013372072
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,754,395 - 20,843,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516619   ⟹   XP_013372073
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,754,395 - 20,841,738 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516620   ⟹   XP_013372074
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,754,395 - 20,842,849 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516621   ⟹   XP_013372075
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,754,395 - 20,829,230 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516622   ⟹   XP_013372076
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,754,395 - 20,843,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516623   ⟹   XP_013372077
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,763,207 - 20,843,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516624   ⟹   XP_013372078
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,757,168 - 20,843,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516625   ⟹   XP_013372079
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,754,395 - 20,826,872 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516626   ⟹   XP_013372080
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,754,395 - 20,803,543 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516627   ⟹   XP_013372081
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,766,807 - 20,843,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516629   ⟹   XP_013372083
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,766,816 - 20,843,015 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001234967
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,765,654 - 20,843,015 (-)NCBI
Sequence:
1 to 5 of 14 rows
1 to 5 of 14 rows
RefSeq Acc Id: XP_013372076   ⟸   XM_013516622
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V961 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372072   ⟸   XM_013516618
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V915 (UniProtKB/TrEMBL),   A0A8C2V961 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372074   ⟸   XM_013516620
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V915 (UniProtKB/TrEMBL),   A0A8C2V961 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372073   ⟸   XM_013516619
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V915 (UniProtKB/TrEMBL),   A0A8C2V961 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372075   ⟸   XM_013516621
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V915 (UniProtKB/TrEMBL),   A0A8C2V961 (UniProtKB/TrEMBL)
- Sequence:
DH



1 to 32 of 32 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000008309 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012187 ENTREZGENE
  ENSCLAT00000012187.1 UniProtKB/TrEMBL
  ENSCLAT00000012188 ENTREZGENE
  ENSCLAT00000012188.1 UniProtKB/TrEMBL
  ENSCLAT00000012189 ENTREZGENE
  ENSCLAT00000012189.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  DUF4347 UniProtKB/TrEMBL
  F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  GEF_Ubiquitin-Prot_Reg UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Ect2l ENTREZGENE
PANTHER EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE UniProtKB/TrEMBL
  EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE UniProtKB/TrEMBL
Pfam DUF4347 UniProtKB/TrEMBL
  F-box-like UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
PROSITE DH_2 UniProtKB/TrEMBL
SMART FBOX UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF48065 UniProtKB/TrEMBL
  SSF81383 UniProtKB/TrEMBL
UniProt A0A8C2V915 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V961 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YNP4 ENTREZGENE, UniProtKB/TrEMBL
1 to 32 of 32 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Ect2l  epithelial cell transforming 2 like    epithelial cell transforming sequence 2 oncogene-like  Symbol and/or name change 5135510 APPROVED