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Gene: Neil2 (nei like DNA glycosylase 2) Chinchilla lanigera

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Symbol:

Neil2

Name:

nei like DNA glycosylase 2

RGD ID:

8823102

Description:

ENCODES a protein that exhibits microtubule binding (ortholog); ASSOCIATED WITH Atrioventricular Septal Defect 4 (ortholog); High Myopia (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); microtubule cytoskeleton (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

endonuclease 8-like 2; nei endonuclease VIII-like 2; nei-like DNA glycosylase 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	53,037,743 - 53,048,723 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	53,037,008 - 53,044,996 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Neil2	Chinchilla	Atrioventricular Septal Defect 4		ISO	NEIL2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Atrioventricular septal defect 4	ClinVar	PMID:19353638 more ...
Neil2	Chinchilla	High Myopia		ISO	NEIL2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: High myopia	ClinVar
Neil2	Chinchilla	Neurodevelopmental Disorders		ISO	NEIL2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
Neil2	Chinchilla	thoracic aortic aneurysm		ISO	NEIL2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Thoracic aortic aneurysm	ClinVar	PMID:32748548

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Neil2	Chinchilla	cytoplasm	located_in	ISO	Neil2 (Mus musculus)	9068941	PMID:15725623	MGI	PMID:15725623
Neil2	Chinchilla	intracellular membrane-bounded organelle	located_in	ISO	NEIL2 (Homo sapiens)	9068941		HPA	GO_REF:0000052
Neil2	Chinchilla	microtubule cytoskeleton	located_in	ISO	Neil2 (Mus musculus)	9068941	PMID:15725623	MGI	PMID:15725623
Neil2	Chinchilla	mitotic spindle	located_in	ISO	Neil2 (Mus musculus)	9068941	PMID:15725623	MGI	PMID:15725623
Neil2	Chinchilla	nucleoplasm	located_in	ISO	NEIL2 (Homo sapiens)	9068941		HPA	GO_REF:0000052

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Neil2	Chinchilla	microtubule binding	enables	ISO	Neil2 (Mus musculus)	9068941	PMID:15725623	MGI	PMID:15725623
Neil2	Chinchilla	protein binding	enables	ISO	UniProtKB:O43186 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
Neil2	Chinchilla	protein binding	enables	ISO	UniProtKB:P14373 more ...	9068941	PMID:25416956	IntAct	PMID:25416956

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

PMID:22301074	PMID:30032202

Neil2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	53,037,743 - 53,048,723 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	53,037,008 - 53,044,996 (+)	NCBI	ChiLan1.0	ChiLan1.0

NEIL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	11,769,710 - 11,787,345 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	11,769,639 - 11,787,345 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	11,627,219 - 11,644,854 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	11,664,666 - 11,682,263 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	11,664,665 - 11,682,263	NCBI
Celera	8	10,756,501 - 10,774,181 (+)	NCBI		Celera
Cytogenetic Map	8	p23.1	NCBI
HuRef	8	10,558,132 - 10,575,813 (+)	NCBI		HuRef
CHM1_1	8	11,692,655 - 11,710,334 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	7,952,965 - 7,970,597 (-)	NCBI		T2T-CHM13v2.0

Neil2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	63,419,888 - 63,431,604 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	63,419,892 - 63,431,305 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	63,182,439 - 63,194,154 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	63,182,443 - 63,193,856 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	63,801,282 - 63,812,362 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	62,136,553 - 62,147,651 (-)	NCBI		MGSCv36	mm8
Celera	14	60,946,177 - 60,957,258 (-)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI
cM Map	14	33.24	NCBI

Neil2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	41,620,650 - 41,631,551 (-)	NCBI		GRCr8
mRatBN7.2	15	37,444,676 - 37,454,863 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	37,445,381 - 37,454,863 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	39,298,146 - 39,307,624 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	40,448,953 - 40,458,431 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	38,906,012 - 38,915,494 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	46,371,780 - 46,382,730 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	46,372,485 - 46,381,967 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	50,136,574 - 50,147,493 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	42,458,573 - 42,468,055 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	42,474,275 - 42,483,755 (-)	NCBI
Celera	15	37,129,707 - 37,139,189 (-)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

NEIL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	28,236,906 - 28,254,781 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	4,263,264 - 4,281,014 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	7,415,540 - 7,433,270 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

NEIL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	26,102,652 - 26,117,418 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	26,103,111 - 26,117,544 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	26,759,198 - 26,773,955 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	26,256,928 - 26,271,720 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	26,255,873 - 26,271,718 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	26,203,051 - 26,224,786 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	26,106,578 - 26,121,344 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	26,258,078 - 26,272,833 (-)	NCBI		UU_Cfam_GSD_1.0

Neil2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	5,122,224 - 5,144,963 (-)	NCBI		HiC_Itri_2

NEIL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	14,945,135 - 14,966,291 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	14,945,129 - 14,966,305 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	16,133,865 - 16,154,327 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NEIL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	7,319,721 - 7,338,683 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	7,319,585 - 7,338,602 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	35,096,846 - 35,116,542 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Neil2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	25,325,480 - 25,333,233 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624758	25,324,115 - 25,334,009 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005373825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005373827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013514559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01003028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01081006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01253257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000023410 ⟹ ENSCLAP00000023189

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955403	53,037,743 - 53,048,723 (+)	Ensembl

RefSeq Acc Id:

XM_005373825 ⟹ XP_005373882

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	53,037,008 - 53,044,996 (+)	NCBI

Sequence:

show sequence

CGCGGAGCTGCCGAAGGCGTCCGCGTCCGCAGGTCACAGCTCCGCGCTGCCAGGGAGGGCCCGCGCCCGCGCCGCTGCTCGCCGTCCCCGCCGCCGAGGAGGCCGGTGCCCGGCCGTGTCCTGGGTCA
GGCGCGGGGACGCCGGCGCGGAGAAGGCGGGCTCGGGCCGGTTCGCCCTGCGTGGCACCGCGAGGGCCCCGTGGTCAGGGACAGCTGTGGTCAGCCCGGACCTGCGCTTCCGGCGGAGCGGCCTGGCT
GAGGTCAGCACCCGGCAGGCTCTGAGCTCCCTCCCCTACCGGCGGCTGGCCCTGGGGTCCAGCCCCAAGGGGTCGGTGAGTGCTTGGAGGAGTGGGGCGGAGGGCAAAGCCTGGAGGAGCCCGCGGTG
CAGACCAGGAACGCGGGCCACTTCGCAAGGTGGCCGCCTGGTAGGCAGGCGCCGGGTGACGCCTGGCACAGCGTGGGTGCCTCTTCGGTGTTTGCAGCACGAATGAAGGCCAGAGGGGCTGGGCGGGA
TGCCGTCCCCCGGGCTGGCCTCACCCTGCAGAAGCCCGTGCCACTGCCGCTCCTGTGGGCCACGTACGCTTGTTTGTTTTAATGCGGTCGGAGGGCTGGAACCCAGGGTGCCTACCAGTGAGCTCCAC
CCTTTTCATTTTGAGGCAGGGTCTCGCTAAGTTCCCCGGGGCCTCAAACTCGATCCTCCTGCCTCAGCCTCTGGAGTAACTGGGATTACAGGGATGCCTGAAGGGCCGTCTGTGAGGAAGTTTCACCG
TCTGGCCTCTGCCTTCGTGGGCCAGCAGGTGCTCAAGACGGGGGGCAGCAGTAAGAAGCTGTGTCCCGCCACCCTGCAGTCCCTGTGGCTTCAGGATGCGCAGGTACATGGAAAGAAGTTGTTCCTTA
GATTCGATGCAGTTGTGGGTGCAGATGCAGATGAAGAGGCAGGGGCCCCCGGCAGCAGCCAGCCACCGGAGCCTCTGCAGAAACGAGCACGGAGAGAGGCGGCTGTGGACCCAGCGCCAGAGCCCAGT
GAACAGAAAACTGGTGATGGATCGTCCCGGTCCTCAGAGCTGCTTCCCAGGGGCCCTGGTGGCCTGGTGGGGGACAGCCCTACAGCAGGGGCCCAGCGGTGGCTGCAGGTCCACTTCGGTTTGTTTGG
TAGCGTCTGGGTGAACGAGTTCTCCAGAGCAAAGAACGCCAACAAGAGAGGAGACTGGCGAGATCCGGTGCCCAGGCTGGTCCTGCACTTTGGCAGTGGTGGATTCCTGGCATTTTATAATTGCCAGA
TGTCATGGAGCCCTGCCCCAGCGATCGAGCCTCGCTGTGACATCTTGTCCGAAGAGTTCCACCGAGGACAGGCCTTGGAGGCTCTGGGTCAGCCGCAGCCCGTGTGCTACACACTCCTGGACCAGCGA
TACTTCTCAGGGTTAGGAAACATCATTAAGAATGAAGCTTTGTACAGAGCCAGGATCCATCCTCTCTCCCTTGGCTCACTCCTGAGTCCCTCGTGTCTGGAGACCCTCGTGGATCACGTGGTGGAGTT
CAGTGCAGACTGGCTCCGGGGCAAGATCCAGGGCCAGCGGCAGCACACGCAGGTCTACCAGAAGGAACAGTGTCCAGCTGGACACCAGGTCCTGAGGGAGGCATTTGGGCCCCCTGGCGGCCTCCAGA
GGCTTACGTGGTGGTGCCCGCAGTGTCAGCCCCAGCTGCCACCCAAGGAGCTGCAGCAGCTCCCGTCCTAAGTCCCCAGGGCCCTTCCTCACGATCTCAGGCCACGGGGACTGTGATTCCTCAGGCGT
GAACTGGACTGGGGCGGGTGCCGAGGAGCGCGTGGGCCAGGAGGTGGTGGTGTCACTGTTCCTCCCACTGGCTGATATATGAGGCACAGATTCCATAGGGGTAGGTTTTTCCCTTTTCTAGTTCAGAT
CGTTCTTCCTGTCTAGTTCTAACGTGAAAGGTGAAAGAAATCTTGATAGTGAATGAAGAGAAAGGATGTGGGTGTTTTGTTTTGGAAACTTTGGTTGATTTGAAGGCCTTCCATTTTGAATAGGAAAA
CAGAATTTTCTTCCTTTGTTCCCCGAGAGATCCAGGGAAGAGGAAAAAGCAACAGGACAAGAGGACTGGGTCAGCCTCCTGCCTGGCTCTTTCCCTCGGGATGGAGATGCCAGGGCGGCCGGCCACCT
TCCTGGAGTGCCCACTGGCCTTTAGAGAAAAGCTATTTGTTTAGTCCTTTAGCGGCTGCATTTCTGACATGTGGAGCATTTCAGGAATCAAGACACAAATACTTCATCAGGTTGTTGGCAATAGTTGA
TGAAACCAGGGCAGTGACCTGAAAATAAAGCTCTTTGTCATTT

hide sequence

RefSeq Acc Id:

XM_005373827 ⟹ XP_005373884

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	53,037,008 - 53,044,996 (+)	NCBI

Sequence:

show sequence

CGCGGAGCTGCCGAAGGCGTCCGCGTCCGCAGGTCACAGCTCCGCGCTGCCAGGGAGGGCCCGC
GCCCGCGCCGCTGCTCGCCGTCCCCGCCGCCGAGGAGGCCGGTGCCCGGCCGTGTCCTGGGTCAGGCGCGGGGACGCCGGCGCGGAGAAGGCGGGCTCGGGCCGGTTCGCCCTGCGTGGCACCGCGAG
GGCCCCGTGGTCAGGGACAGCTGTGGTCAGCCCGGACCTGCGCTTCCGGCGGAGCGGCCTGGCTGAGGGATGCCTGAAGGGCCGTCTGTGAGGAAGTTTCACCGTCTGGCCTCTGCCTTCGTGGGCCA
GCAGGTGCTCAAGACGGGGGGCAGCAGTAAGAAGCTGTGTCCCGCCACCCTGCAGTCCCTGTGGCTTCAGGATGCGCAGGTACATGGAAAGAAGTTGTTCCTTAGATTCGATGCAGTTGTGGGTGCAG
ATGCAGATGAAGAGGCAGGGGCCCCCGGCAGCAGCCAGCCACCGGAGCCTCTGCAGAAACGAGCACGGAGAGAGGCGGCTGTGGACCCAGCGCCAGAGCCCAGTGAACAGAAAACTGGTGATGGATCG
TCCCGGTCCTCAGAGCTGCTTCCCAGGGGCCCTGGTGGCCTGGTGGGGGACAGCCCTACAGCAGGGGCCCAGCGGTGGCTGCAGGTCCACTTCGGTTTGTTTGGTAGCGTCTGGGTGAACGAGTTCTC
CAGAGCAAAGAACGCCAACAAGAGAGGAGACTGGCGAGATCCGGTGCCCAGGCTGGTCCTGCACTTTGGCAGTGGTGGATTCCTGGCATTTTATAATTGCCAGATGTCATGGAGCCCTGCCCCAGCGA
TCGAGCCTCGCTGTGACATCTTGTCCGAAGAGTTCCACCGAGGACAGGCCTTGGAGGCTCTGGGTCAGCCGCAGCCCGTGTGCTACACACTCCTGGACCAGCGATACTTCTCAGGGTTAGGAAACATC
ATTAAGAATGAAGCTTTGTACAGAGCCAGGATCCATCCTCTCTCCCTTGGCTCACTCCTGAGTCCCTCGTGTCTGGAGACCCTCGTGGATCACGTGGTGGAGTTCAGTGCAGACTGGCTCCGGGGCAA
GATCCAGGGCCAGCGGCAGCACACGCAGGTCTACCAGAAGGAACAGTGTCCAGCTGGACACCAGGTCCTGAGGGAGGCATTTGGGCCCCCTGGCGGCCTCCAGAGGCTTACGTGGTGGTGCCCGCAGT
GTCAGCCCCAGCTGCCACCCAAGGAGCTGCAGCAGCTCCCGTCCTAAGTCCCCAGGGCCCTTCCTCACGATCTCAGGCCACGGGGACTGTGATTCCTCAGGCGTGAACTGGACTGGGGCGGGTGCCGA
GGAGCGCGTGGGCCAGGAGGTGGTGGTGTCACTGTTCCTCCCACTGGCTGATATATGAGGCACAGATTCCATAGGGGTAGGTTTTTCCCTTTTCTAGTTCAGATCGTTCTTCCTGTCTAGTTCTAACG
TGAAAGGTGAAAGAAATCTTGATAGTGAATGAAGAGAAAGGATGTGGGTGTTTTGTTTTGGAAACTTTGGTTGATTTGAAGGCCTTCCATTTTGAATAGGAAAACAGAATTTTCTTCCTTTGTTCCCC
GAGAGATCCAGGGAAGAGGAAAAAGCAACAGGACAAGAGGACTGGGTCAGCCTCCTGCCTGGCTCTTTCCCTCGGGATGGAGATGCCAGGGCGGCCGGCCACCTTCCTGGAGTGCCCACTGGCCTTTA
GAGAAAAGCTATTTGTTTAGTCCTTTAGCGGCTGCATTTCTGACATGTGGAGCATTTCAGGAATCAAGACACAAATACTTCATCAGGTTGTTGGCAATAGTTGATGAAACCAGGGCAGTGACCTGAAA
ATAAAGCTCTTTGTCATTT

hide sequence

RefSeq Acc Id:

XM_013514559 ⟹ XP_013370013

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	53,037,008 - 53,044,996 (+)	NCBI

Sequence:

show sequence

CGCGGAGCTGCCGAAGGCGTCCGCGTCCGCAGGTCACAGCTCCGCGCTGCCAGGGAGGGCCCGC
GCCCGCGCCGCTGCTCGCCGTCCCCGCCGCCGAGGAGGCCGGTGCCCGGCCGTGTCCTGGGTCAGGCGCGGGGACGCCGGCGCGGAGAAGGCGGGCTCGGGCCGGTTCGCCCTGCGTGGCACCGCGAG
GGCCCCGTGGTCAGGGACAGCTGTGGTCAGCCCGGACCTGCGCTTCCGGCGGAGCGGCCTGGCTGAGGTCAGCACCCGGCAGGCTCTGAGCTCCCTCCCCTACCGGCGGCTGGCCCTGGGGTCCAGCC
CCAAGGGGTCGGGATGCCTGAAGGGCCGTCTGTGAGGAAGTTTCACCGTCTGGCCTCTGCCTTCGTGGGCCAGCAGGTGCTCAAGACGGGGGGCAGCAGTAAGAAGCTGTGTCCCGCCACCCTGCAGT
CCCTGTGGCTTCAGGATGCGCAGGTACATGGAAAGAAGTTGTTCCTTAGATTCGATGCAGTTGTGGGTGCAGATGCAGATGAAGAGGCAGGGGCCCCCGGCAGCAGCCAGCCACCGGAGCCTCTGCAG
AAACGAGCACGGAGAGAGGCGGCTGTGGACCCAGCGCCAGAGCCCAGTGAACAGAAAACTGGTGATGGATCGTCCCGGTCCTCAGAGCTGCTTCCCAGGGGCCCTGGTGGCCTGGTGGGGGACAGCCC
TACAGCAGGGGCCCAGCGGTGGCTGCAGGTCCACTTCGGTTTGTTTGGTAGCGTCTGGGTGAACGAGTTCTCCAGAGCAAAGAACGCCAACAAGAGAGGAGACTGGCGAGATCCGGTGCCCAGGCTGG
TCCTGCACTTTGGCAGTGGTGGATTCCTGGCATTTTATAATTGCCAGATGTCATGGAGCCCTGCCCCAGCGATCGAGCCTCGCTGTGACATCTTGTCCGAAGAGTTCCACCGAGGACAGGCCTTGGAG
GCTCTGGGTCAGCCGCAGCCCGTGTGCTACACACTCCTGGACCAGCGATACTTCTCAGGGTTAGGAAACATCATTAAGAATGAAGCTTTGTACAGAGCCAGGATCCATCCTCTCTCCCTTGGCTCACT
CCTGAGTCCCTCGTGTCTGGAGACCCTCGTGGATCACGTGGTGGAGTTCAGTGCAGACTGGCTCCGGGGCAAGATCCAGGGCCAGCGGCAGCACACGCAGGTCTACCAGAAGGAACAGTGTCCAGCTG
GACACCAGGTCCTGAGGGAGGCATTTGGGCCCCCTGGCGGCCTCCAGAGGCTTACGTGGTGGTGCCCGCAGTGTCAGCCCCAGCTGCCACCCAAGGAGCTGCAGCAGCTCCCGTCCTAAGTCCCCAGG
GCCCTTCCTCACGATCTCAGGCCACGGGGACTGTGATTCCTCAGGCGTGAACTGGACTGGGGCGGGTGCCGAGGAGCGCGTGGGCCAGGAGGTGGTGGTGTCACTGTTCCTCCCACTGGCTGATATAT
GAGGCACAGATTCCATAGGGGTAGGTTTTTCCCTTTTCTAGTTCAGATCGTTCTTCCTGTCTAGTTCTAACGTGAAAGGTGAAAGAAATCTTGATAGTGAATGAAGAGAAAGGATGTGGGTGTTTTGT
TTTGGAAACTTTGGTTGATTTGAAGGCCTTCCATTTTGAATAGGAAAACAGAATTTTCTTCCTTTGTTCCCCGAGAGATCCAGGGAAGAGGAAAAAGCAACAGGACAAGAGGACTGGGTCAGCCTCCT
GCCTGGCTCTTTCCCTCGGGATGGAGATGCCAGGGCGGCCGGCCACCTTCCTGGAGTGCCCACTGGCCTTTAGAGAAAAGCTATTTGTTTAGTCCTTTAGCGGCTGCATTTCTGACATGTGGAGCATT
TCAGGAATCAAGACACAAATACTTCATCAGGTTGTTGGCAATAGTTGATGAAACCAGGGCAGTGACCTGAAAATAAAGCTCTTTGTCATTT

hide sequence


Protein RefSeqs	XP_005373882	(Get FASTA)	NCBI Sequence Viewer
	XP_005373884	(Get FASTA)	NCBI Sequence Viewer
	XP_013370013	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000023189.1

RefSeq Acc Id:

XP_005373884 ⟸ XM_005373827

- UniProtKB:

A0A8C2W0M0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPEGPSVRKFHRLASAFVGQQVLKTGGSSKKLCPATLQSLWLQDAQVHGKKLFLRFDAVVGADADEEAGAPGSSQPPEPLQKRARREAAVDPAPEPSEQKTGDGSSRSSELLPRGPGGLVGDSPTAGA
QRWLQVHFGLFGSVWVNEFSRAKNANKRGDWRDPVPRLVLHFGSGGFLAFYNCQMSWSPAPAIEPRCDILSEEFHRGQALEALGQPQPVCYTLLDQRYFSGLGNIIKNEALYRARIHPLSLGSLLSPS
CLETLVDHVVEFSADWLRGKIQGQRQHTQVYQKEQCPAGHQVLREAFGPPGGLQRLTWWCPQCQPQLPPKELQQLPS

hide sequence

RefSeq Acc Id:

XP_005373882 ⟸ XM_005373825

- UniProtKB:

A0A8C2W0M0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPEGPSVRKFHRLASAFVGQQVLKTGGSSKKLCPATLQSLWLQDAQVHGKKLFLRFDAVVGADADEEAGAPGSSQPPEPLQKRARREAAVDPAPEPSEQKTGDGSSRSSELLPRGPGGLVGDSPTAGA
QRWLQVHFGLFGSVWVNEFSRAKNANKRGDWRDPVPRLVLHFGSGGFLAFYNCQMSWSPAPAIEPRCDILSEEFHRGQALEALGQPQPVCYTLLDQRYFSGLGNIIKNEALYRARIHPLSLGSLLSPS
CLETLVDHVVEFSADWLRGKIQGQRQHTQVYQKEQCPAGHQVLREAFGPPGGLQRLTWWCPQCQPQLPPKELQQLPS

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RefSeq Acc Id:

XP_013370013 ⟸ XM_013514559

- UniProtKB:

A0A8C2W0M0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPEGPSVRKFHRLASAFVGQQVLKTGGSSKKLCPATLQSLWLQDAQVHGKKLFLRFDAVVGADADEEAGAPGSSQPPEPLQKRARREAAVDPAPEPSEQKTGDGSSRSSELLPRGPGGLVGDSPTAGA
QRWLQVHFGLFGSVWVNEFSRAKNANKRGDWRDPVPRLVLHFGSGGFLAFYNCQMSWSPAPAIEPRCDILSEEFHRGQALEALGQPQPVCYTLLDQRYFSGLGNIIKNEALYRARIHPLSLGSLLSPS
CLETLVDHVVEFSADWLRGKIQGQRQHTQVYQKEQCPAGHQVLREAFGPPGGLQRLTWWCPQCQPQLPPKELQQLPS

hide sequence

Ensembl Acc Id:

ENSCLAP00000023189 ⟸ ENSCLAT00000023410

Protein Domains

Formamidopyrimidine-DNA glycosylase catalytic

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000015914	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000023410.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.8.50	UniProtKB/TrEMBL
InterPro	DNA_glyclase/AP_lyase_DNA-bd	UniProtKB/TrEMBL
	FPG_cat	UniProtKB/TrEMBL
	Ribosomal_S13-like_H2TH	UniProtKB/TrEMBL
NCBI Gene	Neil2	ENTREZGENE
PANTHER	ENDONUCLEASE 8-LIKE 2	UniProtKB/TrEMBL
	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	UniProtKB/TrEMBL
Pfam	H2TH	UniProtKB/TrEMBL
PROSITE	FPG_CAT	UniProtKB/TrEMBL
SMART	H2TH	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46946	UniProtKB/TrEMBL
UniProt	A0A8C2W0M0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Neil2	nei like DNA glycosylase 2		nei-like DNA glycosylase 2	Symbol and/or name change	5135510	APPROVED
2015-08-25	Neil2	nei-like DNA glycosylase 2		nei endonuclease VIII-like 2 (E. coli)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar