NEIL2 (nei like DNA glycosylase 2) - Rat Genome Database

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Gene: NEIL2 (nei like DNA glycosylase 2) Sus scrofa
Analyze
Symbol: NEIL2
Name: nei like DNA glycosylase 2
RGD ID: 13846657
Description: ENCODES a protein that exhibits damaged DNA binding (inferred); DNA binding (inferred); DNA N-glycosylase activity (inferred); INVOLVED IN base-excision repair (inferred); DNA repair (inferred); ASSOCIATED WITH genetic disease (ortholog); High Myopia (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (inferred); intracellular membrane-bounded organelle (inferred); microtubule cytoskeleton (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: endonuclease 8-like 2; nei endonuclease VIII-like 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1414,945,135 - 14,966,291 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11414,945,129 - 14,966,305 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21416,133,865 - 16,154,327 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NEIL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1414,945,135 - 14,966,291 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11414,945,129 - 14,966,305 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21416,133,865 - 16,154,327 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NEIL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38811,769,710 - 11,787,345 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl811,769,639 - 11,787,345 (+)EnsemblGRCh38hg38GRCh38
GRCh37811,627,219 - 11,644,854 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36811,664,666 - 11,682,263 (+)NCBINCBI36Build 36hg18NCBI36
Build 34811,664,665 - 11,682,263NCBI
Celera810,756,501 - 10,774,181 (+)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef810,558,132 - 10,575,813 (+)NCBIHuRef
CHM1_1811,692,655 - 11,710,334 (+)NCBICHM1_1
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBIT2T-CHM13v2.0
Neil2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391463,419,888 - 63,431,604 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1463,419,892 - 63,431,305 (-)EnsemblGRCm39 Ensembl
GRCm381463,182,439 - 63,194,154 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,182,443 - 63,193,856 (-)EnsemblGRCm38mm10GRCm38
MGSCv371463,801,282 - 63,812,362 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361462,136,553 - 62,147,651 (-)NCBIMGSCv36mm8
Celera1460,946,177 - 60,957,258 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.24NCBI
Neil2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81541,620,650 - 41,631,551 (-)NCBIGRCr8
mRatBN7.21537,444,676 - 37,454,863 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1537,445,381 - 37,454,863 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1539,298,146 - 39,307,624 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01540,448,953 - 40,458,431 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01538,906,012 - 38,915,494 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01546,371,780 - 46,382,730 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1546,372,485 - 46,381,967 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01550,136,574 - 50,147,493 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41542,458,573 - 42,468,055 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11542,474,275 - 42,483,755 (-)NCBI
Celera1537,129,707 - 37,139,189 (-)NCBICelera
Cytogenetic Map15p12NCBI
Neil2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540353,037,743 - 53,048,723 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540353,037,008 - 53,044,996 (+)NCBIChiLan1.0ChiLan1.0
NEIL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2728,236,906 - 28,254,781 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan184,263,264 - 4,281,014 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v087,415,540 - 7,433,270 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
NEIL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12526,102,652 - 26,117,418 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2526,103,111 - 26,117,544 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2526,759,198 - 26,773,955 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02526,256,928 - 26,271,720 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2526,255,873 - 26,271,718 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12526,203,051 - 26,224,786 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02526,106,578 - 26,121,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02526,258,078 - 26,272,833 (-)NCBIUU_Cfam_GSD_1.0
Neil2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049435,122,224 - 5,144,963 (-)NCBIHiC_Itri_2
NEIL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.187,319,721 - 7,338,683 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl87,319,585 - 7,338,602 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605235,096,846 - 35,116,542 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Neil2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475825,325,480 - 25,333,233 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475825,324,115 - 25,334,009 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NEIL2
807 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 7
Low 9 4 3 5 2 16 2 3 1
Below cutoff 1

Sequence


RefSeq Acc Id: ENSSSCT00000023064   ⟹   ENSSSCP00000022531
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1414,945,135 - 14,966,291 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000071986   ⟹   ENSSSCP00000060182
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1414,945,168 - 14,965,489 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000089854   ⟹   ENSSSCP00000070630
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1414,945,197 - 15,002,368 (+)Ensembl
RefSeq Acc Id: XM_003359058   ⟹   XP_003359106
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11414,945,129 - 14,966,305 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003359106   ⟸   XM_003359058
- UniProtKB: I3LEP3 (UniProtKB/TrEMBL),   A0A8D0V5H3 (UniProtKB/TrEMBL),   A0A8D1AXP1 (UniProtKB/TrEMBL),   A0A8D0RG64 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000070630   ⟸   ENSSSCT00000089854
RefSeq Acc Id: ENSSSCP00000022531   ⟸   ENSSSCT00000023064
RefSeq Acc Id: ENSSSCP00000060182   ⟸   ENSSSCT00000071986

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028699 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005009734 UniProtKB/TrEMBL
  ENSSSCG00025028196 UniProtKB/TrEMBL
  ENSSSCG00030001635 UniProtKB/TrEMBL
  ENSSSCG00035072302 UniProtKB/TrEMBL
  ENSSSCG00045019588 UniProtKB/TrEMBL
  ENSSSCG00055000029 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023064 ENTREZGENE
  ENSSSCT00000023064.4 UniProtKB/TrEMBL
  ENSSSCT00005014982.1 UniProtKB/TrEMBL
  ENSSSCT00025038257.1 UniProtKB/TrEMBL
  ENSSSCT00030002089.1 UniProtKB/TrEMBL
  ENSSSCT00035097825.1 UniProtKB/TrEMBL
  ENSSSCT00035097832.1 UniProtKB/TrEMBL
  ENSSSCT00045033382.1 UniProtKB/TrEMBL
  ENSSSCT00055000062.1 UniProtKB/TrEMBL
  ENSSSCT00055000063.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.50 UniProtKB/TrEMBL
InterPro DNA_glyclase/AP_lyase_DNA-bd UniProtKB/TrEMBL
  FPG_cat UniProtKB/TrEMBL
  Ribosomal_S13-like_H2TH UniProtKB/TrEMBL
KEGG Report ssc:100624483 UniProtKB/TrEMBL
NCBI Gene NEIL2 ENTREZGENE
PANTHER ENDONUCLEASE 8-LIKE 2 UniProtKB/TrEMBL
  FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE UniProtKB/TrEMBL
Pfam H2TH UniProtKB/TrEMBL
PROSITE FPG_CAT UniProtKB/TrEMBL
SMART H2TH UniProtKB/TrEMBL
Superfamily-SCOP SSF46946 UniProtKB/TrEMBL
UniProt A0A8D0RG64 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0V5H3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AXP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1B268_PIG UniProtKB/TrEMBL
  A0A8D1HRF9_PIG UniProtKB/TrEMBL
  A0A8D1P729_PIG UniProtKB/TrEMBL
  A0A8D1P980_PIG UniProtKB/TrEMBL
  I3LEP3 ENTREZGENE
UniProt Secondary I3LEP3 UniProtKB/TrEMBL
VGNC ID VGNC:90673 ENTREZGENE