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Gene: Tbx4 (T-box transcription factor 4) Chinchilla lanigera

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Symbol:

Tbx4

Name:

T-box transcription factor 4

RGD ID:

8776998

Description:

INVOLVED IN angiogenesis (ortholog); embryonic hindlimb morphogenesis (ortholog); embryonic limb morphogenesis (ortholog); ASSOCIATED WITH Amelia, Autosomal Recessive (ortholog); arthropathy (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

T-box 4; T-box transcription factor TBX4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	2,501,827 - 2,533,136 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	2,491,525 - 2,532,948 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tbx4	Chinchilla	arthropathy	susceptibility	ISO	RGD:1319185	9068941	Small Patella Syndrome, OMIM:147891;DNA:missense mutation, nonsense mutation:exon, exon:p.G248V, p.Q62X	RGD	PMID:15106123\|REF_RGD_ID:1601422

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tbx4	Chinchilla	Amelia, Autosomal Recessive		ISO	RGD:1319185	8554872	ClinVar Annotator: match by term: Autosomal recessive amelia	ClinVar	PMID:24033266\|PMID:25741868\|PMID:28492532\|PMID:31761294\|PMID:31965066
Tbx4	Chinchilla	genetic disease		ISO	RGD:1319185	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:28492532
Tbx4	Chinchilla	hydronephrosis		ISO	RGD:1319185	8554872	ClinVar Annotator: match by term: Hydronephrosis	ClinVar	PMID:25741868\|PMID:31965066
Tbx4	Chinchilla	ischiocoxopodopatellar syndrome		ISO	RGD:1319185	8554872	ClinVar Annotator: match by term: Congenital coxa vara, patella aplasia and tarsal synostosis \| ClinVar more ...	ClinVar	PMID:11303519\|PMID:15106123\|PMID:16199547\|PMID:23592887\|PMID:24033266\|PMID:25741868\|PMID:27587546\|PMID:28492532\|PMID:29120062\|PMID:29631995\|PMID:29650961\|PMID:30029678\|PMID:30578397\|PMID:31151956\|PMID:31727138\|PMID:31761294\|PMID:31965066\|PMID:32079640\|PMID:32581362\|PMID:32860008\|PMID:35852389\|PMID:36085161
Tbx4	Chinchilla	Joubert syndrome 1		ISO	RGD:1319185	8554872	ClinVar Annotator: match by term: Familial aplasia of the vermis	ClinVar	PMID:28492532
Tbx4	Chinchilla	Lung Agenesis		ISO	RGD:1319185	8554872	ClinVar Annotator: match by term: Primary pulmonary hypoplasia	ClinVar
Tbx4	Chinchilla	megacolon		ISO	RGD:1319185	8554872	ClinVar Annotator: match by term: Megacolon	ClinVar	PMID:21681106
Tbx4	Chinchilla	primary pulmonary hypertension 1		ISO	RGD:1319185	8554872	ClinVar Annotator: match by term: Pulmonary hypertension, primary, 1	ClinVar	PMID:15106123\|PMID:16199547\|PMID:17576681\|PMID:23592887\|PMID:25741868\|PMID:27587546\|PMID:28492532\|PMID:29120062\|PMID:29631995\|PMID:29650961\|PMID:30029678\|PMID:30578397\|PMID:31151956\|PMID:31727138\|PMID:31761294\|PMID:31965066\|PMID:32079640\|PMID:32348326\|PMID:32581362\|PMID:32860008\|PMID:33066286\|PMID:33971972\|PMID:34557690\|PMID:36085161\|PMID:9536098
Tbx4	Chinchilla	Pulmonary Arterial Hypertension		ISO	RGD:1319185	8554872	ClinVar Annotator: match by term: Pulmonary arterial hypertension \| ClinVar Annotator: match by term: Pulmonary more ...	ClinVar	PMID:15106123\|PMID:16199547\|PMID:23592887\|PMID:25741868\|PMID:28492532\|PMID:29120062\|PMID:29631995\|PMID:29650961\|PMID:30029678\|PMID:30578397\|PMID:31151956\|PMID:31727138\|PMID:31761294\|PMID:31965066\|PMID:32079640\|PMID:32581362\|PMID:32860008\|PMID:33066286

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tbx4	Chinchilla	Amelia, Autosomal Recessive		ISO	RGD:1319185	7240710		OMIM
Tbx4	Chinchilla	ischiocoxopodopatellar syndrome		ISO	RGD:1319185	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tbx4	Chinchilla	angiogenesis	acts_upstream_of_or_within	ISO	MGI:2663716	9068941	PMID:12736212	MGI	PMID:12736212
Tbx4	Chinchilla	embryonic hindlimb morphogenesis	involved_in	ISO	RGD:1319185	9068941	PMID:31761294	UniProt	PMID:31761294
Tbx4	Chinchilla	embryonic limb morphogenesis	acts_upstream_of_or_within	ISO	MGI:2663716	9068941	PMID:12736212	MGI	PMID:12736212
Tbx4	Chinchilla	embryonic lung development	involved_in	ISO	RGD:1319185	9068941	PMID:31761294	UniProt	PMID:31761294
Tbx4	Chinchilla	limb morphogenesis	involved_in	ISO	RGD:1319185	9068941	PMID:15106123	UniProt	PMID:15106123
Tbx4	Chinchilla	limb morphogenesis	acts_upstream_of_or_within	ISO	RGD:1319186	9068941	PMID:15621531	MGI	PMID:15621531
Tbx4	Chinchilla	lung development	acts_upstream_of_or_within	ISO	RGD:1319186	9068941	PMID:12508227	MGI	PMID:12508227
Tbx4	Chinchilla	morphogenesis of an epithelium	acts_upstream_of_or_within	ISO	RGD:1319186	9068941	PMID:12508227	MGI	PMID:12508227
Tbx4	Chinchilla	skeletal system morphogenesis	involved_in	ISO	RGD:1319185	9068941	PMID:15106123	UniProt	PMID:15106123

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tbx4	Chinchilla	protein binding	enables	ISO	PR:Q8BX22	9068941	PMID:16380715	MGI	PMID:16380715

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

PMID:22301074	PMID:30032202

Tbx4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	2,501,827 - 2,533,136 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	2,491,525 - 2,532,948 (+)	NCBI	ChiLan1.0	ChiLan1.0

TBX4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	61,452,422 - 61,485,110 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	61,452,404 - 61,485,110 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	59,529,783 - 59,562,471 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	56,888,589 - 56,916,446 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	56,888,588 - 56,916,446	NCBI
Celera	17	58,634,841 - 58,662,701 (+)	NCBI		Celera
Cytogenetic Map	17	q23.2	NCBI
HuRef	17	54,900,265 - 54,928,130 (+)	NCBI		HuRef
CHM1_1	17	59,598,306 - 59,626,165 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	62,321,267 - 62,353,953 (+)	NCBI		T2T-CHM13v2.0

Tbx4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	85,777,193 - 85,806,923 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	85,777,248 - 85,806,923 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	85,886,367 - 85,916,097 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	85,886,422 - 85,916,097 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	85,703,565 - 85,729,599 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	85,706,258 - 85,730,940 (+)	NCBI		MGSCv36	mm8
Celera	11	95,517,399 - 95,543,455 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	51.42	NCBI

Tbx4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	71,228,145 - 71,258,222 (+)	NCBI		GRCr8
mRatBN7.2	10	70,730,686 - 70,760,829 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	70,731,163 - 70,760,825 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	75,351,118 - 75,380,785 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	74,855,915 - 74,885,582 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	70,320,562 - 70,350,228 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	73,331,864 - 73,362,784 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	73,333,119 - 73,362,783 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	73,235,103 - 73,265,118 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	74,136,416 - 74,166,080 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	74,154,279 - 74,179,007 (+)	NCBI
Celera	10	69,654,749 - 69,684,469 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

TBX4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	77,651,294 - 77,684,008 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	82,462,735 - 82,495,443 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	55,554,549 - 55,587,253 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	60,677,518 - 60,706,206 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	60,677,518 - 60,705,413 (+)	Ensembl	panpan1.1		panPan2

TBX4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	35,163,346 - 35,197,726 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	35,166,353 - 35,191,932 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	34,395,807 - 34,421,394 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	35,972,610 - 36,007,370 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	35,977,705 - 36,003,297 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	34,758,715 - 34,784,294 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	35,044,477 - 35,070,057 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	35,132,002 - 35,157,583 (-)	NCBI		UU_Cfam_GSD_1.0

Tbx4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	34,221,462 - 34,247,634 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	2,827,416 - 2,852,917 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	2,823,531 - 2,853,282 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TBX4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	36,802,354 - 36,834,327 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	36,803,355 - 36,830,321 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	38,224,618 - 38,257,155 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TBX4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	32,677,878 - 32,715,169 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	32,683,921 - 32,711,674 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	3,430,924 - 3,463,642 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tbx4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624871	2,366,823 - 2,390,269 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624871	2,365,836 - 2,390,269 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005393969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013519055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01043012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01043013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01043014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01152219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000021812 ⟹ ENSCLAP00000021609

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955451	2,501,827 - 2,533,136 (+)	Ensembl

RefSeq Acc Id:

XM_005393969 ⟹ XP_005394026

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	2,501,921 - 2,532,948 (+)	NCBI

Sequence:

show sequence

AGCCTCGGAGATCAAGGGCCCGCTCTGAAGCGGGGATGCGTCCGGCCCCGAGGGCGCGGCGGGCAGAGAGACCCTGACCCGGCCGGGAGTCGGAGCCTGCGCTGCCCCGCGCTCTTCTGCCCGCGCCT
GCAGTGGACCTCGGGCCGCAGGCGCCTCCGCATGTGGCAGCGCAGTTAGGGAGATGCTGCAGGACAAGGGCCTGTCGGAGAGCGAGGTGGCCTTCCGGGCCCCGGGCCCAGCGCTCGGCGAGGGCAGC
GCCGCCACCGCCCCCGAGCCCGCGCTGGCAGCGCCGGGCCTCAGCGGAGCCGCGCTCGGTAGCCCCCCGGGCCCGGGCACCGACGTCGCCGCCGCCACCGCAACCGCCGAGCAGACCATCGAGAACAT
CAAGGTGGGGCTGCACGAGAAGGAGCTCTGGAAGAAGTTCCACGAGGCGGGCACCGAGATGATCATCACCAAGGCGGGCAGGAGGATGTTCCCCAGCTACAAGGTAAAAGTCACAGGCATGAACCCCA
AGACCAAGTACATCTTGCTGATTGACATCGTCCCTGCAGATGACCATCGCTACAAGTTCTGTGACAACAAATGGATGGTGGCCGGCAAGGCCGAGCCGGCCATGCCGGGAAGGCTGTATGTGCACCCG
GATTCTCCCGCCACGGGGGCCCACTGGATGCGGCAGCTGGTCTCCTTCCAGAAGCTGAAGCTGACAAACAACCACCTGGACCCCTTTGGCCATATCATCCTCAACTCCATGCACAAGTACCAGCCACG
GCTGCACATCGTTAAAGCCGATGAGAACAACGCCTTTGGCTCCAAAAACACAGCCTTCTGCACTCATGTGTTCCCAGAGACCTCCTTCATCTCTGTGACCTCCTACCAGAATCACAAGATCACACAGC
TAAAAATCGAGAATAATCCTTTTGCCAAGGGATTCCGGGGCAGTGATGACAGTGACCTGCGTGTGGCCCGGCTGCAGAGCAAAGAGTATCCGGTGATCTCCAAAAGCATCATGAGGCAGAGGCTCGTC
TCCAGCCAGCTCTCGGCCAAGCCTGACGTCAGCCCCCTGCACGGCGCCCACCAGGCCCTGCAGCACTATCAGTATGAAAATGGGGCCCACATGCAGTTTGCCACGGCCGAGCCGCAGGAGCTGGGCCT
CAACACCTTCCCGCCCCAGAGGGACTCCAGCCTCTTCTATCACTGCCTGAAGAGACGAGACAGCGCCCGCCACCTGGAGTTACCCTGCAAGCGATCCTATCTGGAAGCTCCCTCTTCTGTGGCAGAGG
ATCACTACTTCCGTTCTCCCCCTCCCTACGACCAACAGATGCTGAGCCCCTCCTATTGCAGTGAGGTGACTCCCAGAGAAGCCTGTATGTACTCAGGTTCAGGCCCCGAGATTGCCGGGGTGTCTGGG
GTGGACGACTTGCCCCCGCCCCCGCTGAGCTGTAACATGTGGACGTCGGTCTCACCGTACACCAGCTACAGCGTTCAGACCGTGGAGACTGTGCCTTACCAGCCCTTTCCCACGCACTTCACGGCCAC
CACTATGATGCCTCGGCTGCCTACCATCTCCGCTCAGAGCTCCCAGCCGCCAGGGAACGCCCACTTCAGTGTCTACAATCAGCTGTCGCAATCTCAGGTCCGAGAGCGGGGTCCCACGGCCTCCTTCC
CGAGAGAGCGTGGCCTCCCCCCGGGCTGTGAGAGGAAGCCGCCCTCACCTCACCTGAACGCTGCCAATGAGTTTCTCTACTCTCAGAGCTTCTCCTTGACCCGAGAATCTTCCTTACAGTATCATTCA
GGAATGGGGACTGTGGAGAACTGGACTGATGGATGATTGCCACGTCTCCTGGACAGCCCCAGGACCCTGTCAATGAGTGTTAACCTCTGTGGGTGGCCCGCACTCCCAAGAAACCCAGGAAGGTATTT
CAAAGGGTGTACGTGTGCAAATGCTAGTGTGTGTGCATATGTGTGTGTGCATGTGTGTGTGTGTATGTGCTTGTTCATATATGTAGGGAGAGCTGACACATAGCTGAGACCAGCACAAGAGAAGAGAA
ACCCCAGTTATCTAAGAAGCGATTTTGGATGCAGGATCTGGGACTACTGTTACCTGACATCTCTTGACCCGCCCAGGTGAGGGATAGGCGTGGAGGATTCGTTTGAGTTCTTTAGAGGTTTTTATAAT
ACAGTTGGATTCACCCGGGGGCCAGGAGTTGAGGTCTCTCTCTGCTGCAGAGAGAGCTTCTCTCTGCACACCTGGGGGTTCTGGCCTTCCACCCACAAGGGAGCGCAGGGCCCGTCCTTCGGCTTCTG
GAGAGTCTGTGAGACTCCCTGAGCCTCCAAGTGCGCTTTCAGAGCAAAACTGTCAGCTCAGTTGATGGCCTGGAGCTTGATCCCTGGAGCTGTAAGGTCTGAGGGGTGACTTTCAGAGAGGGTCATGT
GCTCAATGCCACCTCATGGGTATTTTAAAATATTTTCTTCCTTTTTTCCTTCAAGCGTAGGGAAAACCCAACCAGTAGCACCTCTGTCATTGTTCAGGGTTTGTGGTAAAGTGCAGAGCCCTTCCCTC
TGGGTCCCCAACGTGCAGTGTCTCTCTGAGGTACACAATCGGCCTGCCTCGTACCCTCTGCATCCCATGGGCAGCAGTCGTGACACACGCTTCACCTGGCAGCGTCCCCAGAACCCTGTCAGAGCTGA
TGTGAGGCATCTCTGCTGGGCGTGTTCTGCTCCCTAAAAACCCATGCCCCTGGAGTGAGACATGCGAAAGAGAATTGAGAAAAATTAATTTCCTCCAGCAAATTCAGCCAGTGTGCTCAGAGGAGCAA
AGCTAACTTTTCTCCAGGGGGTAACCTCGTAGTCCTCAGCCCCGTCCTCTGACGGTGGACATCACCAGACCGTCTGGGTCGGTGGTGTGAGCTCTAAATTAAATTTGGGAAATCACTAAACTCTTTGC
ATGCTGAATAGCTATTTATATATTATATAAATAAATAAATGAGTAAATATATATATCTCACAAATGCGGGCCACATGTCAAATTCAGCTTTGCTTTTTACAAATGAATAAACTTAATAAAAATGAATG
CTGGTGGGGGTATTTGGAAAGACATCTATTTAAATTTTTATGACATGTTTGATATGAAAAACTAAGAATGGTTTAGATAAAGCATATATATATATTATATAAACACACGACAGATAAAGCTTTATTAG
AAAACACATTAGCTGACAGGTGATATGGAACGTCAAGTGTTTTGTTATGTAGCATGGACATTTTATTTTACATATTGGAACATAAAGCCACCTTACAACTGTGAA

hide sequence

RefSeq Acc Id:

XM_013519055 ⟹ XP_013374509

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	2,491,525 - 2,532,948 (+)	NCBI

Sequence:

show sequence

AGGTCACACCCCCAGGAGATGCTGCAGGACAAGGGCCTGTCGGAGAGCGAGGTGGCCTTCCGGGCCCCGGGCCCAGCGCTCGGCGAGGGCAGCGCCGCCACCGCCCCCGAGCCCGCGCTGGCAGCGCC
GGGCCTCAGCGGAGCCGCGCTCGGTAGCCCCCCGGGCCCGGGCACCGACGTCGCCGCCGCCACCGCAACCGCCGAGCAGACCATCGAGAACATCAAGGTGGGGCTGCACGAGAAGGAGCTCTGGAAGA
AGTTCCACGAGGCGGGCACCGAGATGATCATCACCAAGGCGGGCAGGAGGATGTTCCCCAGCTACAAGGTAAAAGTCACAGGCATGAACCCCAAGACCAAGTACATCTTGCTGATTGACATCGTCCCT
GCAGATGACCATCGCTACAAGTTCTGTGACAACAAATGGATGGTGGCCGGCAAGGCCGAGCCGGCCATGCCGGGAAGGCTGTATGTGCACCCGGATTCTCCCGCCACGGGGGCCCACTGGATGCGGCA
GCTGGTCTCCTTCCAGAAGCTGAAGCTGACAAACAACCACCTGGACCCCTTTGGCCATATCATCCTCAACTCCATGCACAAGTACCAGCCACGGCTGCACATCGTTAAAGCCGATGAGAACAACGCCT
TTGGCTCCAAAAACACAGCCTTCTGCACTCATGTGTTCCCAGAGACCTCCTTCATCTCTGTGACCTCCTACCAGAATCACAAGATCACACAGCTAAAAATCGAGAATAATCCTTTTGCCAAGGGATTC
CGGGGCAGTGATGACAGTGACCTGCGTGTGGCCCGGCTGCAGAGCAAAGAGTATCCGGTGATCTCCAAAAGCATCATGAGGCAGAGGCTCGTCTCCAGCCAGCTCTCGGCCAAGCCTGACGTCAGCCC
CCTGCACGGCGCCCACCAGGCCCTGCAGCACTATCAGTATGAAAATGGGGCCCACATGCAGTTTGCCACGGCCGAGCCGCAGGAGCTGGGCCTCAACACCTTCCCGCCCCAGAGGGACTCCAGCCTCT
TCTATCACTGCCTGAAGAGACGAGACAGCGCCCGCCACCTGGAGTTACCCTGCAAGCGATCCTATCTGGAAGCTCCCTCTTCTGTGGCAGAGGATCACTACTTCCGTTCTCCCCCTCCCTACGACCAA
CAGATGCTGAGCCCCTCCTATTGCAGTGAGGTGACTCCCAGAGAAGCCTGTATGTACTCAGGTTCAGGCCCCGAGATTGCCGGGGTGTCTGGGGTGGACGACTTGCCCCCGCCCCCGCTGAGCTGTAA
CATGTGGACGTCGGTCTCACCGTACACCAGCTACAGCGTTCAGACCGTGGAGACTGTGCCTTACCAGCCCTTTCCCACGCACTTCACGGCCACCACTATGATGCCTCGGCTGCCTACCATCTCCGCTC
AGAGCTCCCAGCCGCCAGGGAACGCCCACTTCAGTGTCTACAATCAGCTGTCGCAATCTCAGGTCCGAGAGCGGGGTCCCACGGCCTCCTTCCCGAGAGAGCGTGGCCTCCCCCCGGGCTGTGAGAGG
AAGCCGCCCTCACCTCACCTGAACGCTGCCAATGAGTTTCTCTACTCTCAGAGCTTCTCCTTGACCCGAGAATCTTCCTTACAGTATCATTCAGGAATGGGGACTGTGGAGAACTGGACTGATGGATG
ATTGCCACGTCTCCTGGACAGCCCCAGGACCCTGTCAATGAGTGTTAACCTCTGTGGGTGGCCCGCACTCCCAAGAAACCCAGGAAGGTATTTCAAAGGGTGTACGTGTGCAAATGCTAGTGTGTGTG
CATATGTGTGTGTGCATGTGTGTGTGTGTATGTGCTTGTTCATATATGTAGGGAGAGCTGACACATAGCTGAGACCAGCACAAGAGAAGAGAAACCCCAGTTATCTAAGAAGCGATTTTGGATGCAGG
ATCTGGGACTACTGTTACCTGACATCTCTTGACCCGCCCAGGTGAGGGATAGGCGTGGAGGATTCGTTTGAGTTCTTTAGAGGTTTTTATAATACAGTTGGATTCACCCGGGGGCCAGGAGTTGAGGT
CTCTCTCTGCTGCAGAGAGAGCTTCTCTCTGCACACCTGGGGGTTCTGGCCTTCCACCCACAAGGGAGCGCAGGGCCCGTCCTTCGGCTTCTGGAGAGTCTGTGAGACTCCCTGAGCCTCCAAGTGCG
CTTTCAGAGCAAAACTGTCAGCTCAGTTGATGGCCTGGAGCTTGATCCCTGGAGCTGTAAGGTCTGAGGGGTGACTTTCAGAGAGGGTCATGTGCTCAATGCCACCTCATGGGTATTTTAAAATATTT
TCTTCCTTTTTTCCTTCAAGCGTAGGGAAAACCCAACCAGTAGCACCTCTGTCATTGTTCAGGGTTTGTGGTAAAGTGCAGAGCCCTTCCCTCTGGGTCCCCAACGTGCAGTGTCTCTCTGAGGTACA
CAATCGGCCTGCCTCGTACCCTCTGCATCCCATGGGCAGCAGTCGTGACACACGCTTCACCTGGCAGCGTCCCCAGAACCCTGTCAGAGCTGATGTGAGGCATCTCTGCTGGGCGTGTTCTGCTCCCT
AAAAACCCATGCCCCTGGAGTGAGACATGCGAAAGAGAATTGAGAAAAATTAATTTCCTCCAGCAAATTCAGCCAGTGTGCTCAGAGGAGCAAAGCTAACTTTTCTCCAGGGGGTAACCTCGTAGTCC
TCAGCCCCGTCCTCTGACGGTGGACATCACCAGACCGTCTGGGTCGGTGGTGTGAGCTCTAAATTAAATTTGGGAAATCACTAAACTCTTTGCATGCTGAATAGCTATTTATATATTATATAAATAAA
TAAATGAGTAAATATATATATCTCACAAATGCGGGCCACATGTCAAATTCAGCTTTGCTTTTTACAAATGAATAAACTTAATAAAAATGAATGCTGGTGGGGGTATTTGGAAAGACATCTATTTAAAT
TTTTATGACATGTTTGATATGAAAAACTAAGAATGGTTTAGATAAAGCATATATATATATTATATAAACACACGACAGATAAAGCTTTATTAGAAAACACATTAGCTGACAGGTGATATGGAACGTCA
AGTGTTTTGTTATGTAGCATGGACATTTTATTTTACATATTGGAACATAAAGCCACCTTACAACTGTGAA

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Protein RefSeqs	XP_005394026	(Get FASTA)	NCBI Sequence Viewer
	XP_013374509	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000021609
	ENSCLAP00000021609.1

RefSeq Acc Id:

XP_005394026 ⟸ XM_005393969

- UniProtKB:

A0A8C2VYK4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLQDKGLSESEVAFRAPGPALGEGSAATAPEPALAAPGLSGAALGSPPGPGTDVAAATATAEQTIENIKVGLHEKELWKKFHEAGTEMIITKAGRRMFPSYKVKVTGMNPKTKYILLIDIVPADDHRY
KFCDNKWMVAGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNAFGSKNTAFCTHVFPETSFISVTSYQNHKITQLKIENNPFAKGFRGSDDS
DLRVARLQSKEYPVISKSIMRQRLVSSQLSAKPDVSPLHGAHQALQHYQYENGAHMQFATAEPQELGLNTFPPQRDSSLFYHCLKRRDSARHLELPCKRSYLEAPSSVAEDHYFRSPPPYDQQMLSPS
YCSEVTPREACMYSGSGPEIAGVSGVDDLPPPPLSCNMWTSVSPYTSYSVQTVETVPYQPFPTHFTATTMMPRLPTISAQSSQPPGNAHFSVYNQLSQSQVRERGPTASFPRERGLPPGCERKPPSPH
LNAANEFLYSQSFSLTRESSLQYHSGMGTVENWTDG

hide sequence

RefSeq Acc Id:

XP_013374509 ⟸ XM_013519055

- UniProtKB:

A0A8C2VYK4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLQDKGLSESEVAFRAPGPALGEGSAATAPEPALAAPGLSGAALGSPPGPGTDVAAATATAEQT
IENIKVGLHEKELWKKFHEAGTEMIITKAGRRMFPSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHK
YQPRLHIVKADENNAFGSKNTAFCTHVFPETSFISVTSYQNHKITQLKIENNPFAKGFRGSDDSDLRVARLQSKEYPVISKSIMRQRLVSSQLSAKPDVSPLHGAHQALQHYQYENGAHMQFATAEPQ
ELGLNTFPPQRDSSLFYHCLKRRDSARHLELPCKRSYLEAPSSVAEDHYFRSPPPYDQQMLSPSYCSEVTPREACMYSGSGPEIAGVSGVDDLPPPPLSCNMWTSVSPYTSYSVQTVETVPYQPFPTH
FTATTMMPRLPTISAQSSQPPGNAHFSVYNQLSQSQVRERGPTASFPRERGLPPGCERKPPSPHLNAANEFLYSQSFSLTRESSLQYHSGMGTVENWTDG

hide sequence

Ensembl Acc Id:

ENSCLAP00000021609 ⟸ ENSCLAT00000021812

Protein Domains

T-box

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000014788	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000021812	ENTREZGENE
	ENSCLAT00000021812.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.820	UniProtKB/TrEMBL
InterPro	p53-like_TF_DNA-bd	UniProtKB/TrEMBL
	T-box_DNA-bd	UniProtKB/TrEMBL
	T-box_sf	UniProtKB/TrEMBL
	TF_T-box	UniProtKB/TrEMBL
	TF_T-box_CS	UniProtKB/TrEMBL
NCBI Gene	Tbx4	ENTREZGENE
PANTHER	PTHR11267	UniProtKB/TrEMBL
	T-BOX TRANSCRIPTION FACTOR TBX4	UniProtKB/TrEMBL
Pfam	T-box	UniProtKB/TrEMBL
PRINTS	TBOX	UniProtKB/TrEMBL
PROSITE	TBOX_1	UniProtKB/TrEMBL
	TBOX_2	UniProtKB/TrEMBL
	TBOX_3	UniProtKB/TrEMBL
SMART	TBOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49417	UniProtKB/TrEMBL
UniProt	A0A8C2VYK4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-06-11	Tbx4	T-box transcription factor 4	Tbx4	T-box 4	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM