Rab1b (RAB1B, member RAS oncogene family) - Rat Genome Database

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Gene: Rab1b (RAB1B, member RAS oncogene family) Chinchilla lanigera
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Symbol: Rab1b
Name: RAB1B, member RAS oncogene family
RGD ID: 8711447
Description: ENCODES a protein that exhibits GTP binding (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); establishment of endothelial intestinal barrier (ortholog); Golgi organization (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog); phagophore assembly site membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-1B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,039,632 - 19,047,088 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,039,741 - 19,047,088 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rab1bChinchillaAicardi-Goutieres Syndrome 3  ISORAB1B (Homo sapiens)8554872ClinVar Annotator: match by term: Aicardi-Goutieres syndrome 3ClinVarPMID:28492532
Rab1bChinchillaautosomal recessive cutis laxa type IB  ISORAB1B (Homo sapiens)8554872ClinVar Annotator: match by term: Cutis laxa more ...ClinVarPMID:28492532
Rab1bChinchillaBardet-Biedl syndrome  ISORAB1B (Homo sapiens)8554872ClinVar Annotator: match by term: Bardet-Biedl syndromeClinVarPMID:12118255 more ...
Rab1bChinchillaglycogen storage disease V  ISORAB1B (Homo sapiens)8554872ClinVar Annotator: match by term: Glycogen storage disease and type VClinVarPMID:12118255 more ...
Rab1bChinchillaimmunodeficiency 90  ISORAB1B (Homo sapiens)8554872ClinVar Annotator: match by term: Infections more ...ClinVarPMID:28492532
Rab1bChinchillaintellectual disability  ISORAB1B (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rab1bChinchillaMyocardial Ischemia  ISORAB1B (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:16214533


Biological Process

  

Cellular Component

  

Molecular Function

  


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:22301074  



Rab1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,039,632 - 19,047,088 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,039,741 - 19,047,088 (-)NCBIChiLan1.0ChiLan1.0
RAB1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,268,639 - 66,277,492 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,268,590 - 66,277,492 (+)EnsemblGRCh38hg38GRCh38
GRCh371166,036,110 - 66,044,963 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,792,632 - 65,801,539 (+)NCBINCBI36Build 36hg18NCBI36
Build 341165,792,680 - 65,801,539NCBI
Cytogenetic Map11q13.2NCBI
HuRef1162,361,564 - 62,370,459 (+)NCBIHuRef
CHM1_11165,920,155 - 65,929,064 (+)NCBICHM1_1
T2T-CHM13v2.01166,262,312 - 66,271,155 (+)NCBIT2T-CHM13v2.0
Rab1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,149,235 - 5,157,024 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,149,233 - 5,157,100 (-)EnsemblGRCm39 Ensembl
GRCm38195,099,207 - 5,106,996 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,099,205 - 5,107,072 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,099,207 - 5,106,996 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,099,207 - 5,106,996 (-)NCBIMGSCv36mm8
Celera194,968,413 - 4,976,202 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.25NCBI
Rab1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,835,133 - 211,843,408 (-)NCBIGRCr8
mRatBN7.21202,405,759 - 202,413,850 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX50,857,916 - 50,859,762 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1202,405,759 - 202,413,868 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,758,818 - 210,766,910 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,851,200 - 217,859,291 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,542,234 - 210,550,325 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,483,529 - 220,491,469 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,480,834 - 220,491,469 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,414,583 - 227,422,523 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,720,833 - 207,727,458 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1199,945,209 - 199,953,183 (-)NCBICelera
Cytogenetic Map1q43NCBI
RAB1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,502,340 - 67,511,293 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,545,212 - 68,554,168 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,634,017 - 61,642,945 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,959,957 - 64,968,843 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,959,957 - 64,968,843 (+)Ensemblpanpan1.1panPan2
RAB1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,026,975 - 51,034,356 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,028,013 - 51,034,473 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,635,724 - 49,643,112 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,065,422 - 52,072,793 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,065,422 - 52,072,757 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,165,421 - 51,172,793 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,739,588 - 50,746,974 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,529,728 - 51,537,099 (-)NCBIUU_Cfam_GSD_1.0
Rab1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,874,909 - 6,881,904 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,317,258 - 3,324,213 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,317,258 - 3,324,208 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,102,354 - 6,116,221 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,110,438 - 6,116,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,185,936 - 5,188,256 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,989,521 - 7,998,371 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,989,101 - 7,998,105 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,271,045 - 105,280,234 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,090,441 - 20,098,913 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,091,120 - 20,098,855 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005384425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01022973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDJ01003487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCLAT00000023203   ⟹   ENSCLAP00000022987
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542219,039,632 - 19,047,088 (-)Ensembl
RefSeq Acc Id: XM_005384425   ⟹   XP_005384482
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542219,039,741 - 19,047,088 (-)NCBI
Sequence:
Protein RefSeqs XP_005384482 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021580.1
  ENSCLAP00000022987
  ENSCLAP00000022987.1
RefSeq Acc Id: XP_005384482   ⟸   XM_005384425
- UniProtKB: A0A8C2YTW4 (UniProtKB/TrEMBL),   A0A8C2VWM7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000022987   ⟸   ENSCLAT00000023203



1 to 28 of 28 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000014766 UniProtKB/TrEMBL
  ENSCLAG00000015776 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021783.1 UniProtKB/TrEMBL
  ENSCLAT00000023203 ENTREZGENE
  ENSCLAT00000023203.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab UniProtKB/TrEMBL
  Sigma_54_int_dom_ATP-bd_1 UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
NCBI Gene Rab1b ENTREZGENE
PANTHER RAS-RELATED PROTEIN RAB UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
  SIGMA54_INTERACT_1 UniProtKB/TrEMBL
SMART ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2VWM7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YTW4 ENTREZGENE, UniProtKB/TrEMBL
1 to 28 of 28 rows