RAB1B (RAB1B, member RAS oncogene family) - Rat Genome Database

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Gene: RAB1B (RAB1B, member RAS oncogene family) Homo sapiens
Analyze
Symbol: RAB1B
Name: RAB1B, member RAS oncogene family
RGD ID: 1345480
HGNC Page HGNC:18370
Description: Enables GTP binding activity. Involved in several processes, including endoplasmic reticulum to Golgi vesicle-mediated transport; positive regulation of glycoprotein metabolic process; and regulation of autophagosome assembly. Located in Golgi apparatus and phagophore assembly site membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ras-related protein Rab-1B; small GTP-binding protein
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: RAB1C  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,268,639 - 66,277,492 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,268,590 - 66,277,492 (+)EnsemblGRCh38hg38GRCh38
GRCh371166,036,110 - 66,044,963 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,792,632 - 65,801,539 (+)NCBINCBI36Build 36hg18NCBI36
Build 341165,792,680 - 65,801,539NCBI
Cytogenetic Map11q13.2NCBI
HuRef1162,361,564 - 62,370,459 (+)NCBIHuRef
CHM1_11165,920,155 - 65,929,064 (+)NCBICHM1_1
T2T-CHM13v2.01166,262,312 - 66,271,155 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1918138   PMID:7592724   PMID:8836150   PMID:9030196   PMID:9437002   PMID:10493955   PMID:11076863   PMID:11230166   PMID:11256614   PMID:11306556   PMID:12051767   PMID:12477932  
PMID:12802079   PMID:15489334   PMID:15489336   PMID:15694364   PMID:15796781   PMID:16381901   PMID:17353931   PMID:17429068   PMID:17474147   PMID:17947549   PMID:18187620   PMID:19786618  
PMID:20164217   PMID:20458337   PMID:20545908   PMID:20937701   PMID:20980813   PMID:21093099   PMID:21378754   PMID:21680502   PMID:21832049   PMID:21873635   PMID:21926972   PMID:21988832  
PMID:22011575   PMID:22260459   PMID:22863883   PMID:22939629   PMID:23188820   PMID:23236136   PMID:23246001   PMID:23288104   PMID:23325787   PMID:23824909   PMID:23885123   PMID:24457600  
PMID:25107275   PMID:25970785   PMID:26186194   PMID:26209634   PMID:26344197   PMID:26472760   PMID:26824392   PMID:26949739   PMID:26977884   PMID:27342126   PMID:27462432   PMID:27712585  
PMID:28316326   PMID:28319085   PMID:28514442   PMID:28515276   PMID:28522593   PMID:28718761   PMID:28977666   PMID:29020629   PMID:29128334   PMID:29509190   PMID:29564676   PMID:29568061  
PMID:29845934   PMID:29955894   PMID:30559450   PMID:30575818   PMID:30655362   PMID:30804014   PMID:31046837   PMID:31091453   PMID:31180492   PMID:31182584   PMID:31300519   PMID:31375559  
PMID:31527615   PMID:31586073   PMID:31723608   PMID:31871319   PMID:31980649   PMID:32176628   PMID:32203420   PMID:32235678   PMID:32296183   PMID:32687490   PMID:32913203   PMID:33022573  
PMID:33144569   PMID:33469029   PMID:33545068   PMID:33961781   PMID:34079125   PMID:34349018   PMID:34428256   PMID:34597346   PMID:34709727   PMID:35032548   PMID:35256949   PMID:35271311  
PMID:35338135   PMID:35384245   PMID:35446349   PMID:35509820   PMID:35676659   PMID:35831314   PMID:35906200   PMID:35944360   PMID:36042349   PMID:36057605   PMID:36114006   PMID:36215168  
PMID:36225252   PMID:36244648   PMID:36346305   PMID:36424410   PMID:36517590   PMID:36527092   PMID:36538041   PMID:36574265   PMID:36606322   PMID:36610398   PMID:36634849   PMID:36811957  
PMID:36966971   PMID:37075641   PMID:37076474   PMID:37112806   PMID:37689310   PMID:37827155   PMID:38245532  


Genomics

Comparative Map Data
RAB1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,268,639 - 66,277,492 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,268,590 - 66,277,492 (+)EnsemblGRCh38hg38GRCh38
GRCh371166,036,110 - 66,044,963 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,792,632 - 65,801,539 (+)NCBINCBI36Build 36hg18NCBI36
Build 341165,792,680 - 65,801,539NCBI
Cytogenetic Map11q13.2NCBI
HuRef1162,361,564 - 62,370,459 (+)NCBIHuRef
CHM1_11165,920,155 - 65,929,064 (+)NCBICHM1_1
T2T-CHM13v2.01166,262,312 - 66,271,155 (+)NCBIT2T-CHM13v2.0
Rab1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,149,235 - 5,157,024 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,149,233 - 5,157,100 (-)EnsemblGRCm39 Ensembl
GRCm38195,099,207 - 5,106,996 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,099,205 - 5,107,072 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,099,207 - 5,106,996 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,099,207 - 5,106,996 (-)NCBIMGSCv36mm8
Celera194,968,413 - 4,976,202 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.25NCBI
Rab1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,835,133 - 211,843,408 (-)NCBIGRCr8
mRatBN7.21202,405,759 - 202,413,850 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX50,857,916 - 50,859,762 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1202,405,759 - 202,413,868 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,758,818 - 210,766,910 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,851,200 - 217,859,291 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,542,234 - 210,550,325 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,483,529 - 220,491,469 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,480,834 - 220,491,469 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,414,583 - 227,422,523 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,720,833 - 207,727,458 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1199,945,209 - 199,953,183 (-)NCBICelera
Cytogenetic Map1q43NCBI
Rab1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,039,632 - 19,047,088 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,039,741 - 19,047,088 (-)NCBIChiLan1.0ChiLan1.0
RAB1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,502,340 - 67,511,293 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,545,212 - 68,554,168 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,634,017 - 61,642,945 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,959,957 - 64,968,843 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,959,957 - 64,968,843 (+)Ensemblpanpan1.1panPan2
RAB1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,026,975 - 51,034,356 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,028,013 - 51,034,473 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,635,724 - 49,643,112 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,065,422 - 52,072,793 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,065,422 - 52,072,757 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,165,421 - 51,172,793 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,739,588 - 50,746,974 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,529,728 - 51,537,099 (-)NCBIUU_Cfam_GSD_1.0
Rab1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,874,909 - 6,881,904 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,317,258 - 3,324,213 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,317,258 - 3,324,208 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,102,354 - 6,116,221 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,110,438 - 6,116,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,185,936 - 5,188,256 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,989,521 - 7,998,371 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,989,101 - 7,998,105 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,271,045 - 105,280,234 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,090,441 - 20,098,913 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,091,120 - 20,098,855 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAB1B
6 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11q13.2(chr11:66193502-67890770)x3 copy number gain See cases [RCV000053623] Chr11:66193502..67890770 [GRCh38]
Chr11:65960973..67658241 [GRCh37]
Chr11:65717549..67414817 [NCBI36]
Chr11:11q13.2
pathogenic
Single allele deletion Intellectual disability [RCV001293382] Chr11:118359328..118372573 [GRCh37]
Chr11:11p15.3-q23.3
pathogenic
GRCh38/hg38 11q13.1-13.2(chr11:65741431-67705669)x1 copy number loss See cases [RCV000142881] Chr11:65741431..67705669 [GRCh38]
Chr11:65508902..67473140 [GRCh37]
Chr11:65265478..67229716 [NCBI36]
Chr11:11q13.1-13.2
pathogenic
GRCh37/hg19 11q13.2(chr11:66024774-67430781)x3 copy number gain See cases [RCV000240374] Chr11:66024774..67430781 [GRCh37]
Chr11:11q13.2
uncertain significance
GRCh37/hg19 11q13.1-13.2(chr11:64501919-67129258)x3 copy number gain See cases [RCV000511632] Chr11:64501919..67129258 [GRCh37]
Chr11:11q13.1-13.2
likely pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11q13.1-13.2(chr11:65138976-67574402) copy number gain not provided [RCV000767601] Chr11:65138976..67574402 [GRCh37]
Chr11:11q13.1-13.2
pathogenic
GRCh37/hg19 11q13.2(chr11:65906060-66086140)x1 copy number loss not provided [RCV000683313] Chr11:65906060..66086140 [GRCh37]
Chr11:11q13.2
uncertain significance
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3 copy number gain not provided [RCV000737348] Chr11:198510..134934063 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3 copy number gain not provided [RCV000749874] Chr11:70864..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
NC_000011.9:g.(?_65633902)_(66115026_?)dup duplication Cutis laxa, autosomal recessive, type 1B [RCV000798155] Chr11:65866431..66347555 [GRCh38]
Chr11:65633902..66115026 [GRCh37]
Chr11:11q13.1-13.2
uncertain significance
NC_000011.9:g.(?_64973914)_(70052579_?)dup duplication Aicardi-Goutieres syndrome 3 [RCV003113322]|FADD-related immunodeficiency [RCV003107753] Chr11:64973914..70052579 [GRCh37]
Chr11:11q13.1-13.3
uncertain significance
NC_000011.9:g.(?_65633902)_(66115026_?)dup duplication Autosomal recessive cutis laxa type 1B [RCV001305354] Chr11:65633902..66115026 [GRCh37]
Chr11:11q13.1-13.2
uncertain significance
NC_000011.9:g.(?_59596957)_(68707199_?)dup duplication Familial temporal lobe epilepsy 8 [RCV001372442] Chr11:59596957..68707199 [GRCh37]
Chr11:11q12.1-13.3
uncertain significance
GRCh37/hg19 11q13.2(chr11:65963737-66581485)x1 copy number loss not provided [RCV001827874] Chr11:65963737..66581485 [GRCh37]
Chr11:11q13.2
uncertain significance
GRCh37/hg19 11q13.1-13.2(chr11:64935724-66405514) copy number loss not specified [RCV002052930] Chr11:64935724..66405514 [GRCh37]
Chr11:11q13.1-13.2
uncertain significance
NC_000011.9:g.(?_64522783)_(66283694_?)del deletion Bardet-Biedl syndrome [RCV002014493]|Glycogen storage disease, type V [RCV002004587] Chr11:64522783..66283694 [GRCh37]
Chr11:11q13.1-13.2
pathogenic
GRCh37/hg19 11p13-q25(chr11:32799481-134938470)x3 copy number gain MISSED ABORTION [RCV002282973] Chr11:32799481..134938470 [GRCh37]
Chr11:11p13-q25
pathogenic
NM_030981.3(RAB1B):c.544G>A (p.Glu182Lys) single nucleotide variant not specified [RCV004102361] Chr11:66276176 [GRCh38]
Chr11:66043647 [GRCh37]
Chr11:11q13.2
uncertain significance
NM_030981.3(RAB1B):c.326A>G (p.Tyr109Cys) single nucleotide variant not specified [RCV004132132] Chr11:66275850 [GRCh38]
Chr11:66043321 [GRCh37]
Chr11:11q13.2
uncertain significance
NM_030981.3(RAB1B):c.295G>A (p.Val99Met) single nucleotide variant not specified [RCV004265135] Chr11:66275819 [GRCh38]
Chr11:66043290 [GRCh37]
Chr11:11q13.2
uncertain significance
NM_030981.3(RAB1B):c.523C>T (p.Pro175Ser) single nucleotide variant not specified [RCV004281010] Chr11:66276155 [GRCh38]
Chr11:66043626 [GRCh37]
Chr11:11q13.2
uncertain significance
NM_030981.3(RAB1B):c.562A>G (p.Ile188Val) single nucleotide variant not specified [RCV004355439] Chr11:66276194 [GRCh38]
Chr11:66043665 [GRCh37]
Chr11:11q13.2
uncertain significance
GRCh37/hg19 11q12.2-13.5(chr11:59923608-76272324)x3 copy number gain not provided [RCV003484842] Chr11:59923608..76272324 [GRCh37]
Chr11:11q12.2-13.5
pathogenic
GRCh37/hg19 11q12.1-13.3(chr11:56895955-69295402)x3 copy number gain not specified [RCV003986944] Chr11:56895955..69295402 [GRCh37]
Chr11:11q12.1-13.3
likely pathogenic
NM_030981.3(RAB1B):c.592G>A (p.Gly198Ser) single nucleotide variant not specified [RCV004443038] Chr11:66276224 [GRCh38]
Chr11:66043695 [GRCh37]
Chr11:11q13.2
uncertain significance
NM_030981.3(RAB1B):c.323G>T (p.Arg108Leu) single nucleotide variant not specified [RCV004443034] Chr11:66275847 [GRCh38]
Chr11:66043318 [GRCh37]
Chr11:11q13.2
uncertain significance
NM_030981.3(RAB1B):c.482C>T (p.Ala161Val) single nucleotide variant not specified [RCV004443035] Chr11:66276114 [GRCh38]
Chr11:66043585 [GRCh37]
Chr11:11q13.2
uncertain significance
NM_030981.3(RAB1B):c.574C>G (p.Pro192Ala) single nucleotide variant not specified [RCV004443037] Chr11:66276206 [GRCh38]
Chr11:66043677 [GRCh37]
Chr11:11q13.2
uncertain significance
NM_030981.3(RAB1B):c.164A>G (p.Lys55Arg) single nucleotide variant not specified [RCV004443033] Chr11:66272233 [GRCh38]
Chr11:66039704 [GRCh37]
Chr11:11q13.2
uncertain significance
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR502hsa-miR-502-5pOncomiRDBexternal_infoNANA22580605

Predicted Target Of
Summary Value
Count of predictions:1509
Count of miRNA genes:635
Interacting mature miRNAs:739
Transcripts:ENST00000311481, ENST00000527397
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357380BW64_HBody weight QTL 64 (human)2.2Body weightpercent fat after exercise training116097893786978937Human

Markers in Region
RH69692  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 2 2 2 12 2
Medium 2432 2981 1721 621 1948 462 4356 2191 3708 417 1437 1606 171 1204 2788 4 1
Low 7 10 3 1 3 1 1 6 26 2 11 5 4 1 2 1
Below cutoff

Sequence


RefSeq Acc Id: ENST00000311481   ⟹   ENSP00000310226
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,268,639 - 66,277,492 (+)Ensembl
RefSeq Acc Id: ENST00000527397   ⟹   ENSP00000435195
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1166,268,590 - 66,276,629 (+)Ensembl
RefSeq Acc Id: NM_030981   ⟹   NP_112243
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381166,268,639 - 66,277,492 (+)NCBI
GRCh371166,036,056 - 66,044,963 (+)ENTREZGENE
Build 361165,792,632 - 65,801,539 (+)NCBI Archive
HuRef1162,361,564 - 62,370,459 (+)ENTREZGENE
CHM1_11165,920,155 - 65,929,064 (+)NCBI
T2T-CHM13v2.01166,262,312 - 66,271,155 (+)NCBI
Sequence:
RefSeq Acc Id: NP_112243   ⟸   NM_030981
- UniProtKB: A8K7S1 (UniProtKB/Swiss-Prot),   Q9H0U4 (UniProtKB/Swiss-Prot),   Q6FIG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000310226   ⟸   ENST00000311481
RefSeq Acc Id: ENSP00000435195   ⟸   ENST00000527397

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9H0U4-F1-model_v2 AlphaFold Q9H0U4 1-201 view protein structure

Promoters
RGD ID:6789288
Promoter ID:HG_KWN:13389
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_030981
Position:
Human AssemblyChrPosition (strand)Source
Build 361165,791,731 - 65,792,707 (+)MPROMDB
RGD ID:6810113
Promoter ID:HG_ACW:12734
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:RAB1B.DAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 361165,798,961 - 65,799,461 (+)MPROMDB
RGD ID:7221127
Promoter ID:EPDNEW_H16310
Type:initiation region
Name:RAB1B_1
Description:RAB1B, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381166,268,639 - 66,268,699EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18370 AgrOrtholog
COSMIC RAB1B COSMIC
Ensembl Genes ENSG00000174903 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000311481 ENTREZGENE
  ENST00000311481.11 UniProtKB/Swiss-Prot
  ENST00000527397.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000174903 GTEx
HGNC ID HGNC:18370 ENTREZGENE
Human Proteome Map RAB1B Human Proteome Map
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:81876 UniProtKB/Swiss-Prot
NCBI Gene 81876 ENTREZGENE
OMIM 612565 OMIM
PANTHER LD21953P UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-1B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA34108 PharmGKB
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
  RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART ARF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8K7S1 ENTREZGENE
  E9PLD0_HUMAN UniProtKB/TrEMBL
  Q6FIG4 ENTREZGENE, UniProtKB/TrEMBL
  Q92927_HUMAN UniProtKB/TrEMBL
  Q9H0U4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A8K7S1 UniProtKB/Swiss-Prot