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Gene: Thap1 (THAP domain containing 1) Chinchilla lanigera

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Symbol:

Thap1

Name:

THAP domain containing 1

RGD ID:

8708382

Description:

ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN DNA-templated transcription (ortholog); endothelial cell proliferation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A12 (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN fibrillar center (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

THAP domain containing, apoptosis associated protein 1; THAP domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	13,072,697 - 13,088,406 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955457	13,077,015 - 13,088,406 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital muscular dystrophy-dystroglycanopathy type A12 (ISO)

dystonia (ISO)

genetic disease (ISO)

Idiopathic Basal Ganglia Calcification 1 (ISO)

IMMUNODEFICIENCY 15 (ISO)

immunodeficiency 15B (ISO)

Multiple mitochondrial dysfunctions syndrome 9B (ISO)

torsion dystonia 6 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (ISO)

endothelial cell proliferation (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (ISO)

regulation of mitotic cell cycle (ISO)

Cellular Component

fibrillar center (ISO)

intracellular membrane-bounded organelle (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

identical protein binding (ISO)

protein binding (ISO)

protein homodimerization activity (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (ISO)

sequence-specific DNA binding (ISO)

zinc ion binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Thap1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	13,072,697 - 13,088,406 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955457	13,077,015 - 13,088,406 (-)	NCBI	ChiLan1.0	ChiLan1.0

THAP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	42,836,674 - 42,843,325 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	42,836,674 - 42,843,325 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	42,691,817 - 42,698,468 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	42,810,974 - 42,817,631 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	8	41,639,814 - 41,646,471 (-)	NCBI		Celera
Cytogenetic Map	8	p11.21	NCBI
HuRef	8	41,214,132 - 41,220,749 (-)	NCBI		HuRef
CHM1_1	8	42,738,710 - 42,745,365 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	43,104,786 - 43,111,438 (-)	NCBI		T2T-CHM13v2.0

Thap1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	26,648,197 - 26,654,179 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	26,648,169 - 26,654,179 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	26,158,169 - 26,164,151 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	26,158,141 - 26,164,151 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	27,268,641 - 27,274,623 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	27,623,758 - 27,628,485 (+)	NCBI		MGSCv36	mm8
Celera	8	27,628,046 - 27,634,067 (+)	NCBI		Celera
Cytogenetic Map	8	A2	NCBI
cM Map	8	14.4	NCBI

Thap1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	72,608,096 - 72,612,690 (-)	NCBI		GRCr8
mRatBN7.2	16	65,905,348 - 65,909,942 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	65,904,230 - 65,909,942 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	71,188,350 - 71,192,941 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	74,594,689 - 74,599,280 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	69,834,669 - 69,839,270 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	70,661,360 - 70,665,831 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	70,661,320 - 70,665,831 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	70,327,551 - 70,332,022 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	70,268,327 - 70,272,795 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	70,268,590 - 70,273,060 (-)	NCBI
Celera	16	63,817,000 - 63,821,594 (-)	NCBI		Celera
Cytogenetic Map	16	q12.4	NCBI

THAP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	61,294,013 - 61,300,803 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	37,010,047 - 37,017,149 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	42,084,934 - 42,092,044 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	39,528,366 - 39,535,202 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	39,528,366 - 39,535,207 (-)	Ensembl	panpan1.1		panPan2

THAP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	22,940,257 - 22,951,453 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	22,940,216 - 22,948,582 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	23,444,785 - 23,456,842 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	24,691,238 - 24,703,292 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	24,691,721 - 24,703,060 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	23,059,540 - 23,071,596 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	23,624,575 - 23,636,631 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	23,675,416 - 23,687,716 (+)	NCBI		UU_Cfam_GSD_1.0

Thap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	45,983,632 - 45,989,406 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004937108	157,578 - 164,564 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004937108	157,652 - 162,015 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

THAP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	11,765,149 - 11,772,620 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	11,765,383 - 11,773,321 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	12,607,474 - 12,614,788 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

THAP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	40,833,488 - 40,840,748 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	40,830,790 - 40,840,462 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	930,122 - 937,376 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Thap1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624780	39,472 - 58,138 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624780	41,137 - 57,798 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005397068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013520673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001236385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001236386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001236387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001236388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001236389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001236390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001236391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001236392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01047037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCB01074927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000005690 ⟹ ENSCLAP00000005589

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955457	13,072,697 - 13,088,406 (-)	Ensembl

RefSeq Acc Id:

XM_005397068 ⟹ XP_005397125

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955457	13,077,015 - 13,088,406 (-)	NCBI

Sequence:

show sequence

CTCTGACCTCTGAGCTATCACAGACGGTGAAGAACTCCTCGCGAGAGGTGAGGTTGAAGCTGCC
TCCGCCATCTTAGAGATGGGAGACGGGTGATGGCTGTGGTTCTTCCGCTAATGCAAACAACAAA
ACGAGCAAAGTAGTCACTCTGGAGTGTGGCTATCATCCCTGTAACGGTTCACGAAAAGCTAGAG
AAGAAGCAAGAGTCTCAAAGTCGAGCGCAGCGACACTGAAAGCCCCTTTACCTGCCTTCTAGGG
CGGCAGAAGTGAAGTGACGGAGACACACAAGAATGGTGCAGTCCTGTTCCGCCTACGGCTGCAA
GAACCGATATGATAAGGATAAACCTGTTTCTTTCCACAAATTTCCTCTTACTCGACCCAGTCTT
TGTAAACAATGGGAAGCAGCTGTCAGAAGAAAAAACTTCAAGCCCACCAAGTACAGCAGTATTT
GTTCAGAGCACTTTACTCCAGATTGCTTTAAGAGGGAATGCAACAACAAGTTACTGAAAGAGAA
CGCTGTACCCACCATATTTCTTTGTACCGAGCCACATGACAAGAAAGAAGATTTGGAGCCACAA
GAACAGCTTCCCCCACCTCCTTCGACACCTCCCATTTCCCAGGTTGATGCTGCGATTGGATTAC
TGATGCCTCCTCTTCAGACCCCTGATAATCTGTCAGTTTTCTGTGACCACAACTATACTGTGGA
GGATACAATGCACCAGAGGAAAAGGATTCATCAGCTTGAACAGCAAGTGGAAAAACTCAGGAAG
AAGCTCAAGACTGCCCAGCAGCGATGCAGAAGACAAGAACGACAGCTTGAAAAATTAAAAGAGG
TCGTGCACTTCCAGAAGGAGAAAGATGACGTATCAGAGAGAGGCTATGTGATTCTACCTAATGA
CATCTTTGAAATCGTTGAAGTACCAGCATAAAAAAGTAAAATATGTAAATGTGGGCAAAAATAT
GTAAATGTGACCGTATATCCTCTTTTAGCCTATACGGGAATTTTCATTTGAAAAATAACACTTG
ATTATTTGCATAAAAA

hide sequence

RefSeq Acc Id:

XM_013520673 ⟹ XP_013376127

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955457	13,077,412 - 13,088,406 (-)	NCBI

Sequence:

show sequence

CTCTGACCTCTGAGCTATCACAGACGGTGAAGAACTCCTCGCGAGAGGTGAGGTTGAAGCTGCC
TCCGCCATCTTAGAGATGGGAGACGGGTGATGGCTGTGGTTCTTCCGCTAATGCAAACAACAAA
ACGAGCAAAGTAGTCACTCTGGAGTGTGGCTATCATCCCTGTAACGGTTCACGAAAAGCTAGAG
AAGAAGCAAGAGTCTCAAAGTCGAGCGCAGCGACACTGAAAGCCCCTTTACCTGCCTTCTAGGG
CGGCAGAAGTGAAGTGACGGAGACACACAAGAATGGTGCAGTCCTGTTCCGCCTACGGCTGCAA
GAACCGATATGATAAGGATAAACCTGTTTCTTTCCACAAAAAGAAGATTTGGAGCCACAAGAAC
AGCTTCCCCCACCTCCTTCGACACCTCCCATTTCCCAGGTTGATGCTGCGATTGGATTACTGA

hide sequence

RefSeq Acc Id:

XR_001236385

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955457	13,078,476 - 13,088,406 (-)	NCBI

Sequence:

show sequence

CTCTGACCTCTGAGCTATCACAGACGGTGAAGAACTCCTCGCGAGAGGTGAGGTTGAAGCTGCC
TCCGCCATCTTAGAGATGGGAGACGGGTGATGGCTGTGGTTCTTCCGCTAATGCAAACAACAAA
ACGAGCAAAGTAGTCACTCTGGAGTGTGGCTATCATCCCTGTAACGGTTCACGAAAAGCTAGAG
AAGAAGCAAGAGTCTCAAAGTCGAGCGCAGCGACACTGAAAGCCCCTTTACCTGCCTTCTAGGG
CGGCAGAAGTGAAGTGACGGAGACACACAAGAATGGTGCAGTCCTGTTCCGCCTACGGCTGCAA
GAACCGATATGATAAGGATAAACCTGTTTCTTTCCACAAGTGAGTAAACCTCGCGCCTAGCAGG
GCGGCCTCCGCTATCCTGAGAGCGCGCGGCCAGCCGGGGCGGGGAGAACCAGGCGCGTGTCCGC
GCGGCCCGTGACGCGGGGGGCGGGACCTCGGGCGGGCGGGGGCGGGGCCTCGGGCTGGCGGCCG
GATCGGGTTCCTCCGGGTCGGGTCTCGCCGGCCTCCCTGGGCCTCTGCGGCCGCGGGTGTTCCC
TAGGGCCGGTCGCTCGACCCTCTGGACTTCTTAGTAATTCCTTACGGGTCAATCTGAAATAGAA
ACACAGGCCATAGACGGTAGAAGACGCTGTTTTTGCTGTTGCTGTGGATGCGAGGCGTGATAAT
TAACGGTTGATGGTTGGACCCAATTTCTGATCAATCTAGTTGACCCCAGTAAAAGGAGTCCAGC
ACATTCATCAGCTCCGTGTGACTATTTGAGTTTGACACCAGTAAGTGAGAAGAAACAAATTTTA
CCAAGAAATAAAGAATGCATGGCCCAAACTTAAGAACCAGAATGAAAAAACAAATTGGAGAAGG
AGCCAAGATTTCCTCTTACTCGACCCAGTCTTTGTAAACAATGGGAAGCAGCTGTCAGAAGAAA
AAACTTCAAGCCCACCAAGTACAGCAGTAT

hide sequence

RefSeq Acc Id:

XR_001236386

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955457	13,078,476 - 13,088,406 (-)	NCBI

Sequence:

show sequence

CTCTGACCTCTGAGCTATCACAGACGGTGAAGAACTCCTCGCGAGAGGTGAGGTTGAAGCTGCC
TCCGCCATCTTAGAGATGGGAGACGGGTGATGGCTGTGGTTCTTCCGCTAATGCAAACAACAAA
ACGAGCAAAGTAGTCACTCTGGAGTGTGGCTATCATCCCTGTAACGGTTCACGAAAAGCTAGAG
AAGAAGCAAGAGTCTCAAAGTCGAGCGCAGCGACACTGAAAGCCCCTTTACCTGCCTTCTAGGG
CGGCAGAAGTGAAGTGACGGAGACACACAAGAATGGTGCAGTCCTGTTCCGCCTACGGCTGCAA
GAACCGATATGATAAGGATAAACCTGTTTCTTTCCACAAGTGAGTAAACCTCGCGCCTAGCAGG
GCGGCCTCCGCTATCCTGAGAGCGCGCGGCCAGCCGGGGCGGGGAGAACCAGGCGCGTGTCCGC
GCGGCCCGTGACGCGGGGGGCGGGACCTCGGGCGGGCGGGGGCGGGGCCTCGGGCTGGCGGCCG
GATCGGGTTCCTCCGGGTCGGGTCTCGCCGGCCTCCCTGGGCCTCTGCGGCCGCGGGTGTTCCC
TAGGGCCGGTCGCTCGACCCTCTGGACTTCTTAGTAATTCCTTACGGGTCAATCTGAAATAGAA
ACACAGGCCATAGACGGTAGAAGACGCTGTTTTTGCTGTTGCTGTGGATGCGAGGCGTGATAAT
TAACGGTTGATGGATCAATCTAGTTGACCCCAGTAAAAGGAGTCCAGCACATTCATCAGCTCCG
TGTGACTATTTGAGTTTGACACCAGTAAGTGAGAAGAAACAAATTTTACCAAGAAATAAAGAAT
GCATGGCCCAAACTTAAGAACCAGAATGAAAAAACAAATTGGAGAAGGAGCCAAGATTTCCTCT
TACTCGACCCAGTCTTTGTAAACAATGGGAAGCAGCTGTCAGAAGAAAAAACTTCAAGCCCACC
AAGTACAGCAGTAT

hide sequence

RefSeq Acc Id:

XR_001236387

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955457	13,078,476 - 13,088,406 (-)	NCBI

Sequence:

show sequence

CTCTGACCTCTGAGCTATCACAGACGGTGAAGAACTCCTCGCGAGAGGTGAGGTTGAAGCTGCC
TCCGCCATCTTAGAGATGGGAGACGGGTGATGGCTGTGGTTCTTCCGCTAATGCAAACAACAAA
ACGAGCAAAGTAGTCACTCTGGAGTGTGGCTATCATCCCTGTAACGGTTCACGAAAAGCTAGAG
AAGAAGCAAGAGTCTCAAAGTCGAGCGCAGCGACACTGAAAGCCCCTTTACCTGCCTTCTAGGG
CGGCAGAAGTGAAGTGACGGAGACACACAAGAATGGTGCAGTCCTGTTCCGCCTACGGCTGCAA
GAACCGATATGATAAGGATAAACCTGTTTCTTTCCACAAGTGAGTAAACCTCGCGCCTAGCAGG
GCGGCCTCCGCTATCCTGAGAGCGCGCGGCCAGCCGGGGCGGGGAGAACCAGGCGCGTGTCCGC
GCGGCCCGTGACGCGGGGGGCGGGACCTCGGGCGGGCGGGGGCGGGGCCTCGGGCTGGCGGCCG
GATCGGGTTCCTCCGGGTCGGGTCTCGCCGGCCTCCCTGGGCCTCTGCGGCCGCGGGTGTTCCC
TAGGGCCGGTCGCTCGACCCTCTGGACTTCTTAGTAATTCCTTACGGGTCAATCTGAAATAGAA
ACACAGGCCATAGACGGTAGAAGACGCTGTTTTTGCTGTTGCTGTGGATGCGAGGCGTGATAAT
TAACGGTTGATGGTTGGACCCAATTTCTGATAGCTGGACACCTCACTCTATCTCAGGCCGGTCC
TCTAGTCTAGCTAGTTGCCTTACTCATAAGGATCAATCTAGTTGACCCCAGTAAAAGGAGTCCA
GCACATTCATCAGCTCCGTGTGACTATTTGAGTTTGACACCAGTAAGTGAGAAGAAACAAATTT
TACCAAGAAATAAAGAATGCATGGCCCAAACTTAAGAACCAGAATGAAAAAACAAATTGGAGAA
GGAGCCAAGATTTCCTCTTACTCGACCCAGTCTTTGTAAACAATGGGAAGCAGCTGTCAGAAGA
AAAAACTTCAAGCCCACCAAGTACAGCAGTAT

hide sequence

RefSeq Acc Id:

XR_001236388

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955457	13,078,476 - 13,088,406 (-)	NCBI

Sequence:

show sequence

CTCTGACCTCTGAGCTATCACAGACGGTGAAGAACTCCTCGCGAGAGGTGAGGTTGAAGCTGCC
TCCGCCATCTTAGAGATGGGAGACGGGTGATGGCTGTGGTTCTTCCGCTAATGCAAACAACAAA
ACGAGCAAAGTAGTCACTCTGGAGTGTGGCTATCATCCCTGTAACGGTTCACGAAAAGCTAGAG
AAGAAGCAAGAGTCTCAAAGTCGAGCGCAGCGACACTGAAAGCCCCTTTACCTGCCTTCTAGGG
CGGCAGAAGTGAAGTGACGGAGACACACAAGAATGGTGCAGTCCTGTTCCGCCTACGGCTGCAA
GAACCGATATGATAAGGATAAACCTGTTTCTTTCCACAAGTGAGTAAACCTCGCGCCTAGCAGG
GCGGCCTCCGCTATCCTGAGAGCGCGCGGCCAGCCGGGGCGGGGAGAACCAGGCGCGTGTCCGC
GCGGCCCGTGACGCGGGGGGCGGGACCTCGGGCGGGCGGGGGCGGGGCCTCGGGCTGGCGGCCG
GATCGGGTTCCTCCGGGTCGGGTCTCGCCGGCCTCCCTGGGCCTCTGCGGCCGCGGGTGTTCCC
TAGGGCCGGTCGCTCGACCCTCTGGACTTCTTAGTAATTCCTTACGGGTCAATCTGAAATAGAA
ACACAGGCCATAGACGGTAGAAGACGCTGTTTTTGCTGTTGCTGTGGATGCGAGGCGTGATAAT
TAACGGTTGATGGATAGCTGGACACCTCACTCTATCTCAGGCCGGTCCTCTAGTCTAGCTAGTT
GCCTTACTCATAAGGATCAATCTAGTTGACCCCAGTAAAAGGAGTCCAGCACATTCATCAGCTC
CGTGTGACTATTTGAGTTTGACACCAGTAAGTGAGAAGAAACAAATTTTACCAAGAAATAAAGA
ATGCATGGCCCAAACTTAAGAACCAGAATGAAAAAACAAATTGGAGAAGGAGCCAAGATTTCCT
CTTACTCGACCCAGTCTTTGTAAACAATGGGAAGCAGCTGTCAGAAGAAAAAACTTCAAGCCCA
CCAAGTACAGCAGTAT

hide sequence

RefSeq Acc Id:

XR_001236389

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955457	13,078,478 - 13,088,406 (-)	NCBI

Sequence:

show sequence

CTCTGACCTCTGAGCTATCACAGACGGTGAAGAACTCCTCGCGAGAGGTGAGGTTGAAGCTGCC
TCCGCCATCTTAGAGATGGGAGACGGGTGATGGCTGTGGTTCTTCCGCTAATGCAAACAACAAA
ACGAGCAAAGTAGTCACTCTGGAGTGTGGCTATCATCCCTGTAACGGTTCACGAAAAGCTAGAG
AAGAAGCAAGAGTCTCAAAGTCGAGCGCAGCGACACTGAAAGCCCCTTTACCTGCCTTCTAGGG
CGGCAGAAGTGAAGTGACGGAGACACACAAGAATGGTGCAGTCCTGTTCCGCCTACGGCTGCAA
GAACCGATATGATAAGGATAAACCTGTTTCTTTCCACAAGTGAGTAAACCTCGCGCCTAGCAGG
GCGGCCTCCGCTATCCTGAGAGCGCGCGGCCAGCCGGGGCGGGGAGAACCAGGCGCGTGTCCGC
GCGGCCCGTGACGCGGGGGGCGGGACCTCGGGCGGGCGGGGGCGGGGCCTCGGGCTGGCGGCCG
GATCGGGTTCCTCCGGGTCGGGTCTCGCCGGCCTCCCTGGGCCTCTGCGGCCGCGGGTGTTCCC
TAGGGCCGGTCGCTCGACCCTCTGGACTTCTTAGTAATTCCTTACGGGTCAATCTGAAATAGAA
ACACAGGCCATAGACGGTAGAAGACGCTGTTTTTGCTGTTGCTGTGGATGCGAGGCGTGATAAT
TAACGGTTGATGGTTGGACCCAATTTCTATTTCCTCTTACTCGACCCAGTCTTTGTAAACAATG
GGAAGCAGCTGTCAGAAGAAAAAACTTCAAGCCCACCAAGTACAGCAGT

hide sequence

RefSeq Acc Id:

XR_001236390

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955457	13,078,477 - 13,088,406 (-)	NCBI

Sequence:

show sequence

CTCTGACCTCTGAGCTATCACAGACGGTGAAGAACTCCTCGCGAGAGGTGAGGTTGAAGCTGCC
TCCGCCATCTTAGAGATGGGAGACGGGTGATGGCTGTGGTTCTTCCGCTAATGCAAACAACAAA
ACGAGCAAAGTAGTCACTCTGGAGTGTGGCTATCATCCCTGTAACGGTTCACGAAAAGCTAGAG
AAGAAGCAAGAGTCTCAAAGTCGAGCGCAGCGACACTGAAAGCCCCTTTACCTGCCTTCTAGGG
CGGCAGAAGTGAAGTGACGGAGACACACAAGAATGGTGCAGTCCTGTTCCGCCTACGGCTGCAA
GAACCGATATGATAAGGATAAACCTGTTTCTTTCCACAAGTGAGTAAACCTCGCGCCTAGCAGG
GCGGCCTCCGCTATCCTGAGAGCGCGCGGCCAGCCGGGGCGGGGAGAACCAGGCGCGTGTCCGC
GCGGCCCGTGACGCGGGGGGCGGGACCTCGGGCGGGCGGGGGCGGGGCCTCGGGCTGGCGGCCG
GATCGGGTTCCTCCGGGTCGGGTCTCGCCGGCCTCCCTGGGCCTCTGCGGCCGCGGGTGTTCCC
TAGGGCCGGTCGCTCGACCCTCTGGACTTCTTAGTAATTCCTTACGGGTCAATCTGAAATAGAA
ACACAGGCCATAGACGGTAGAAGACGCTGTTTTTGCTGTTGCTGTGGATGCGAGGCGTGATAAT
TAACGGTTGATGGTTGGACCCAATTTCTGATCAATCTAGTTGACCCCAGTAAAAGGAGTCCAGC
ACATTCATCAGCTCCGTGTGACTATTTGAGTTTGACACCAGTAAGTGAGAAGAAACAAATTTTA
CCAAGAAATAAAGAATGCATGGCCCAAACTTAAGAACCAGAATGAAAAAACAAATTGGAGAAGG
AGCCAAGGTTAGACACTATTTTTAAGGGATTCCGGTAGGGATTGTAACTGCCTGTTTATGAAGA
TTTCCTCTTACTCGACCCAGTCTTTGTAAACAATGGGAAGCAGCTGTCAGAAGAAAAAACTTCA
AGCCCACCAAGTACAGCAGTA

hide sequence

RefSeq Acc Id:

XR_001236391

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955457	13,078,474 - 13,088,406 (-)	NCBI

Sequence:

show sequence

CTCTGACCTCTGAGCTATCACAGACGGTGAAGAACTCCTCGCGAGAGGTGAGGTTGAAGCTGCC
TCCGCCATCTTAGAGATGGGAGACGGGTGATGGCTGTGGTTCTTCCGCTAATGCAAACAACAAA
ACGAGCAAAGTAGTCACTCTGGAGTGTGGCTATCATCCCTGTAACGGTTCACGAAAAGCTAGAG
AAGAAGCAAGAGTCTCAAAGTCGAGCGCAGCGACACTGAAAGCCCCTTTACCTGCCTTCTAGGG
CGGCAGAAGTGAAGTGACGGAGACACACAAGAATGGTGCAGTCCTGTTCCGCCTACGGCTGCAA
GAACCGATATGATAAGGATAAACCTGTTTCTTTCCACAAGTGAGTAAACCTCGCGCCTAGCAGG
GCGGCCTCCGCTATCCTGAGAGCGCGCGGCCAGCCGGGGCGGGGAGAACCAGGCGCGTGTCCGC
GCGGCCCGTGACGCGGGGGGCGGGACCTCGGGCGGGCGGGGGCGGGGCCTCGGGCTGGCGGCCG
GATCGGGTTCCTCCGGGTCGGGTCTCGCCGGCCTCCCTGGGCCTCTGCGGCCGCGGGTGTTCCC
TAGGGCCGGTCGCTCGACCCTCTGGACTTCTTAGTAATTCCTTACGGGTCAATCTGAAATAGAA
ACACAGGCCATAGACGGTAGAAGACGCTGTTTTTGCTGTTGCTGTGGATGCGAGGCGTGATAAT
TAACGGTTGATGATTTCCTCTTACTCGACCCAGTCTTTGTAAACAATGGGAAGCAGCTGTCAGA
AGAAAAAACTTCAAGCCCACCAAGTACAGCAGTATTT

hide sequence

RefSeq Acc Id:

XR_001236392

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955457	13,078,483 - 13,088,406 (-)	NCBI

Sequence:

show sequence

CTCTGACCTCTGAGCTATCACAGACGGTGAAGAACTCCTCGCGAGAGGTGAGGTTGAAGCTGCC
TCCGCCATCTTAGAGATGGGAGACGGGTGATGGCTGTGGTTCTTCCGCTAATGCAAACAACAAA
ACGAGCAAAGTAGTCACTCTGGAGTGTGGCTATCATCCCTGTAACGGTTCACGAAAAGCTAGAG
AAGAAGCAAGAGTCTCAAAGTCGAGCGCAGCGACACTGAAAGCCCCTTTACCTGCCTTCTAGGG
CGGCAGAAGTGAAGTGACGGAGACACACAAGAATGGTGCAGTCCTGTTCCGCCTACGGCTGCAA
GAACCGATATGATAAGGATAAACCTGTTTCTTTCCACAAGTGAGTAAACCTCGCGCCTAGCAGG
GCGGCCTCCGCTATCCTGAGAGCGCGCGGCCAGCCGGGGCGGGGAGAACCAGGCGCGTGTCCGC
GCGGCCCGTGACGCGGGGGGCGGGACCTCGGGCGGGCGGGGGCGGGGCCTCGGGCTGGCGGCCG
GATCGGGTTCCTCCGGGTCGGGTCTCGCCGGCCTCCCTGGGCCTCTGCGGCCGCGGGTGTTCCC
TAGGGCCGGTCGCTCGACCCTCTGGACTTCTTAGTAATTCCTTACGGGTCAATCTGAAATAGAA
ACACAGGCCATAGACGGTAGAAGACGCTGTTTTTGCTGTTGCTGTGGATGCGAGGCGTGATAAT
TAACGGTTGATGGTTGGACCCAATTTCTGATAGCTGGACACCTCACTCTATCTCAGGCCGGTCC
TCTAGTCTAGCTAGTTGCCTTACTCATAAGATTTCCTCTTACTCGACCCAGTCTTTGTAAACAA
TGGGAAGCAGCTGTCAGAAGAAAAAACTTCAAGCCCACCAAGTACA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005397125	(Get FASTA)	NCBI Sequence Viewer
	XP_013376127	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000005589
	ENSCLAP00000005589.1

RefSeq Acc Id:	XP_005397125 ⟸ XM_005397068
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2UUL3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVQSCSAYGCKNRYDKDKPVSFHKFPLTRPSLCKQWEAAVRRKNFKPTKYSSICSEHFTPDCFK RECNNKLLKENAVPTIFLCTEPHDKKEDLEPQEQLPPPPSTPPISQVDAAIGLLMPPLQTPDNL SVFCDHNYTVEDTMHQRKRIHQLEQQVEKLRKKLKTAQQRCRRQERQLEKLKEVVHFQKEKDDV SERGYVILPNDIFEIVEVPA hide sequence

RefSeq Acc Id:	XP_013376127 ⟸ XM_013520673
- Peptide Label:	isoform X2
- Sequence:	show sequence MVQSCSAYGCKNRYDKDKPVSFHKKKIWSHKNSFPHLLRHLPFPRLMLRLDY hide sequence

Ensembl Acc Id:

ENSCLAP00000005589 ⟸ ENSCLAT00000005690

Protein Domains

THAP-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003969	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000005690	ENTREZGENE
	ENSCLAT00000005690.1	UniProtKB/TrEMBL
Gene3D-CATH	6.20.210.20	UniProtKB/TrEMBL
InterPro	THAP1	UniProtKB/TrEMBL
	THAP_Znf	UniProtKB/TrEMBL
	THAP_Znf_sf	UniProtKB/TrEMBL
NCBI Gene	Thap1	ENTREZGENE
PANTHER	PTHR46600	UniProtKB/TrEMBL
	THAP DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	THAP	UniProtKB/TrEMBL
PROSITE	ZF_THAP	UniProtKB/TrEMBL
SMART	DM3	UniProtKB/TrEMBL
	THAP	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	A0A8C2UUL3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Thap1	THAP domain containing 1		THAP domain containing, apoptosis associated protein 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM