THAP1 (THAP domain containing 1) - Rat Genome Database
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Gene: THAP1 (THAP domain containing 1) Sus scrofa
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Symbol: THAP1
Name: THAP domain containing 1
RGD ID: 13922233
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN regulation of transcription, DNA-templated (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A12 (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: THAP domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1711,765,148 - 11,817,795 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11711,765,383 - 11,773,321 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21712,607,474 - 12,614,788 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
THAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1711,765,148 - 11,817,795 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11711,765,383 - 11,773,321 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21712,607,474 - 12,614,788 (+)NCBISscrofa10.2Sscrofa10.2susScr3
THAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl842,836,674 - 42,843,325 (-)EnsemblGRCh38hg38GRCh38
GRCh38842,836,674 - 42,843,325 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37842,691,817 - 42,698,468 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36842,810,974 - 42,817,631 (-)NCBINCBI36hg18NCBI36
Celera841,639,814 - 41,646,471 (-)NCBI
Cytogenetic Map8p11.21NCBI
HuRef841,214,132 - 41,220,749 (-)NCBIHuRef
CHM1_1842,738,710 - 42,745,365 (-)NCBICHM1_1
Thap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39826,648,197 - 26,654,179 (+)NCBIGRCm39mm39
GRCm39 Ensembl826,648,169 - 26,654,179 (+)Ensembl
GRCm38826,158,169 - 26,164,151 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl826,158,141 - 26,164,151 (+)EnsemblGRCm38mm10GRCm38
MGSCv37827,268,641 - 27,274,623 (+)NCBIGRCm37mm9NCBIm37
MGSCv36827,623,758 - 27,628,485 (+)NCBImm8
Celera827,628,046 - 27,634,067 (+)NCBICelera
Cytogenetic Map8A2NCBI
Thap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21665,905,348 - 65,909,942 (-)NCBI
Rnor_6.0 Ensembl1670,661,320 - 70,665,831 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01670,661,360 - 70,665,831 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01670,327,551 - 70,332,022 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41670,268,327 - 70,272,795 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11670,268,590 - 70,273,060 (-)NCBI
Celera1663,817,000 - 63,821,594 (-)NCBICelera
Cytogenetic Map16q12.4NCBI
Thap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545713,072,697 - 13,088,406 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545713,077,015 - 13,088,406 (-)NCBIChiLan1.0ChiLan1.0
THAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1839,528,366 - 39,535,202 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl839,528,366 - 39,535,207 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0842,084,934 - 42,092,044 (-)NCBIMhudiblu_PPA_v0panPan3
THAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1622,940,216 - 22,948,582 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11622,940,257 - 22,951,453 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Thap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004937108157,652 - 162,015 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THAP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1840,833,488 - 40,840,748 (-)NCBI
ChlSab1.1 Ensembl840,830,790 - 40,840,462 (-)Ensembl
Thap1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478041,137 - 57,798 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000050531   ⟹   ENSSSCP00000035307
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1711,765,148 - 11,772,149 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000053327   ⟹   ENSSSCP00000041016
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1711,765,152 - 11,817,795 (-)Ensembl
RefSeq Acc Id: XM_003359869   ⟹   XP_003359917
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11711,765,383 - 11,773,321 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003359917 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003359917   ⟸   XM_003359869
- UniProtKB: A0A287AAN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000035307   ⟸   ENSSSCT00000050531
RefSeq Acc Id: ENSSSCP00000041016   ⟸   ENSSSCT00000053327
Protein Domains
THAP-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039969 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070015572 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000035307 UniProtKB/TrEMBL
  ENSSSCP00000041016 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070025477 UniProtKB/TrEMBL
  ENSSSCP00070025484 UniProtKB/TrEMBL
  ENSSSCP00070025499 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000050531 UniProtKB/TrEMBL
  ENSSSCT00000053327 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070030551 UniProtKB/TrEMBL
  ENSSSCT00070030558 UniProtKB/TrEMBL
  ENSSSCT00070030575 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.180 UniProtKB/TrEMBL
InterPro THAP1 UniProtKB/TrEMBL
  THAP_Znf UniProtKB/TrEMBL
  THAP_Znf_sf UniProtKB/TrEMBL
KEGG Report ssc:100621925 UniProtKB/TrEMBL
NCBI Gene THAP1 ENTREZGENE
PANTHER PTHR46600 UniProtKB/TrEMBL
Pfam THAP UniProtKB/TrEMBL
PROSITE ZF_THAP UniProtKB/TrEMBL
SMART DM3 UniProtKB/TrEMBL
  THAP UniProtKB/TrEMBL
UniProt A0A286ZUK2_PIG UniProtKB/TrEMBL
  A0A287AAN9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UB65_PIG UniProtKB/TrEMBL
  A0A4X1UBS1_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95950 ENTREZGENE