THAP1 (THAP domain containing 1) - Rat Genome Database

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Gene: THAP1 (THAP domain containing 1) Pan paniscus
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Symbol: THAP1
Name: THAP domain containing 1
RGD ID: 11747573
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN endothelial cell proliferation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); regulation of mitotic cell cycle (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A12 (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN fibrillar center (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: THAP domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1839,528,366 - 39,535,202 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl839,528,366 - 39,535,207 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0842,084,934 - 42,092,044 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
THAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1839,528,366 - 39,535,202 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl839,528,366 - 39,535,207 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0842,084,934 - 42,092,044 (-)NCBIMhudiblu_PPA_v0panPan3
THAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl842,836,674 - 42,843,325 (-)EnsemblGRCh38hg38GRCh38
GRCh38842,836,674 - 42,843,325 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37842,691,817 - 42,698,468 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36842,810,974 - 42,817,631 (-)NCBINCBI36hg18NCBI36
Celera841,639,814 - 41,646,471 (-)NCBI
Cytogenetic Map8p11.21NCBI
HuRef841,214,132 - 41,220,749 (-)NCBIHuRef
CHM1_1842,738,710 - 42,745,365 (-)NCBICHM1_1
Thap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39826,648,197 - 26,654,179 (+)NCBIGRCm39mm39
GRCm39 Ensembl826,648,169 - 26,654,179 (+)Ensembl
GRCm38826,158,169 - 26,164,151 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl826,158,141 - 26,164,151 (+)EnsemblGRCm38mm10GRCm38
MGSCv37827,268,641 - 27,274,623 (+)NCBIGRCm37mm9NCBIm37
MGSCv36827,623,758 - 27,628,485 (+)NCBImm8
Celera827,628,046 - 27,634,067 (+)NCBICelera
Cytogenetic Map8A2NCBI
Thap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21665,905,348 - 65,909,942 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1665,904,230 - 65,909,942 (-)Ensembl
Rnor_6.01670,661,360 - 70,665,831 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1670,661,320 - 70,665,831 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01670,327,551 - 70,332,022 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41670,268,327 - 70,272,795 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11670,268,590 - 70,273,060 (-)NCBI
Celera1663,817,000 - 63,821,594 (-)NCBICelera
Cytogenetic Map16q12.4NCBI
Thap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545713,072,697 - 13,088,406 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545713,077,015 - 13,088,406 (-)NCBIChiLan1.0ChiLan1.0
THAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11622,940,257 - 22,951,453 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1622,940,216 - 22,948,582 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1623,444,785 - 23,456,842 (+)NCBI
ROS_Cfam_1.01624,691,238 - 24,703,292 (+)NCBI
UMICH_Zoey_3.11623,059,540 - 23,071,596 (+)NCBI
UNSW_CanFamBas_1.01623,624,575 - 23,636,631 (+)NCBI
UU_Cfam_GSD_1.01623,675,416 - 23,687,716 (+)NCBI
Thap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494345,983,632 - 45,989,406 (+)NCBI
SpeTri2.0NW_004937108157,652 - 162,015 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1711,765,148 - 11,817,795 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11711,765,383 - 11,773,321 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21712,607,474 - 12,614,788 (+)NCBISscrofa10.2Sscrofa10.2susScr3
THAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1840,833,488 - 40,840,748 (-)NCBIChlSab1.1chlSab2
ChlSab1.1840,833,488 - 40,840,748 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl840,830,790 - 40,840,462 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666052930,122 - 937,376 (+)NCBIVero_WHO_p1.0
Thap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478041,137 - 57,798 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000029641   ⟹   ENSPPAP00000007359
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl839,528,366 - 39,535,207 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000029648   ⟹   ENSPPAP00000007362
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl839,528,366 - 39,535,192 (-)Ensembl
RefSeq Acc Id: XM_003823275   ⟹   XP_003823323
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1839,528,366 - 39,535,192 (-)NCBI
Mhudiblu_PPA_v0842,084,934 - 42,091,641 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008976906   ⟹   XP_008975154
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1839,528,366 - 39,535,202 (-)NCBI
Mhudiblu_PPA_v0842,084,934 - 42,092,044 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003823323 (Get FASTA)   NCBI Sequence Viewer  
  XP_008975154 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008975154   ⟸   XM_008976906
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003823323   ⟸   XM_003823275
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSPPAP00000007362   ⟸   ENSPPAT00000029648
RefSeq Acc Id: ENSPPAP00000007359   ⟸   ENSPPAT00000029641


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000026582 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000007359 ENTREZGENE
  ENSPPAP00000007362 ENTREZGENE
NCBI Gene THAP1 ENTREZGENE